Wall clock time and date at job start Sat Apr 11 2020 05:39:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.46863 * 2 1 4 4 C 1.50699 * 109.47261 * 240.00221 * 2 1 3 5 5 O 1.21278 * 120.00084 * 240.00713 * 4 2 1 6 6 N 1.34776 * 119.99861 * 59.99291 * 4 2 1 7 7 C 1.46505 * 119.99797 * 180.02562 * 6 4 2 8 8 C 1.53005 * 109.47035 * 180.02562 * 7 6 4 9 9 H 1.08998 * 109.46909 * 294.99879 * 8 7 6 10 10 C 1.52998 * 109.47111 * 174.99935 * 8 7 6 11 11 N 1.46904 * 109.47149 * 55.00162 * 8 7 6 12 12 C 1.46892 * 110.99813 * 205.00201 * 11 8 7 13 13 C 1.50704 * 109.47085 * 179.97438 * 12 11 8 14 14 O 1.21294 * 120.00014 * 359.97438 * 13 12 11 15 15 N 1.34776 * 120.00075 * 179.97438 * 13 12 11 16 16 C 1.37091 * 120.00037 * 179.97438 * 15 13 12 17 17 H 1.08004 * 120.00333 * 0.02562 * 16 15 13 18 18 C 1.38950 * 120.00126 * 180.02562 * 16 15 13 19 19 N 1.31409 * 120.00212 * 180.02562 * 18 16 15 20 20 Si 1.86801 * 119.99996 * 0.02562 * 18 16 15 21 21 H 1.48503 * 109.46877 * 90.00076 * 20 18 16 22 22 H 1.48499 * 109.47121 * 209.99823 * 20 18 16 23 23 H 1.48500 * 109.47307 * 330.00141 * 20 18 16 24 24 C 1.50702 * 109.47554 * 119.99899 * 2 1 3 25 25 C 1.33388 * 125.20547 * 240.00595 * 24 2 1 26 26 C 1.38421 * 114.92066 * 180.29144 * 25 24 2 27 27 C 1.33395 * 114.92147 * 359.48238 * 26 25 24 28 28 S 1.75885 * 125.19995 * 60.01949 * 24 2 1 29 29 H 1.09004 * 109.46765 * 299.99775 * 1 2 3 30 30 H 1.08997 * 109.47114 * 59.99841 * 1 2 3 31 31 H 1.08999 * 109.47316 * 180.02562 * 1 2 3 32 32 H 0.96998 * 120.00496 * 0.02562 * 6 4 2 33 33 H 1.08997 * 109.46925 * 299.99996 * 7 6 4 34 34 H 1.08999 * 109.46847 * 60.00461 * 7 6 4 35 35 H 1.09001 * 109.46915 * 60.00023 * 10 8 7 36 36 H 1.08993 * 109.47344 * 179.97438 * 10 8 7 37 37 H 1.08999 * 109.47055 * 300.00544 * 10 8 7 38 38 H 1.00895 * 111.00141 * 81.04266 * 11 8 7 39 39 H 1.09005 * 109.46994 * 299.99700 * 12 11 8 40 40 H 1.09001 * 109.47668 * 59.99935 * 12 11 8 41 41 H 0.97009 * 119.99890 * 0.02562 * 15 13 12 42 42 H 0.96996 * 120.00225 * 179.97438 * 19 18 16 43 43 H 1.08002 * 122.53671 * 0.02562 * 25 24 2 44 44 H 1.08001 * 122.54223 * 179.72513 * 26 25 24 45 45 H 1.07998 * 125.20353 * 180.21324 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 8 2.7295 -1.6965 -1.1192 6 7 1.7067 -0.2499 -2.4545 7 6 2.1946 -0.9408 -3.6508 8 6 1.6851 -0.2192 -4.9000 9 1 0.5987 -0.2954 -4.9459 10 6 2.2948 -0.8645 -6.1461 11 7 2.0747 1.1960 -4.8411 12 6 1.1636 2.0265 -5.6399 13 6 1.5935 3.4684 -5.5550 14 8 2.5633 3.7742 -4.8937 15 7 0.9005 4.4182 -6.2138 16 6 1.2913 5.7299 -6.1362 17 1 2.1547 6.0022 -5.5474 18 6 0.5764 6.7092 -6.8150 19 7 0.9513 7.9665 -6.7410 20 14 -0.9175 6.2384 -7.8329 21 1 -2.1332 6.2921 -6.9817 22 1 -1.0638 7.1876 -8.9655 23 1 -0.7431 4.8613 -8.3604 24 6 2.0325 -0.7104 1.2305 25 6 2.8025 -0.1646 2.1730 26 6 3.1453 -1.0143 3.2104 27 6 2.6448 -2.2472 3.1160 28 16 1.6934 -2.3862 1.6432 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 1.1492 0.5389 -2.5436 33 1 3.2846 -0.9411 -3.6509 34 1 1.8309 -1.9683 -3.6506 35 1 2.0057 -1.9146 -6.1898 36 1 1.9315 -0.3507 -7.0360 37 1 3.3811 -0.7884 -6.1001 38 1 3.0310 1.3205 -5.1376 39 1 1.1909 1.6994 -6.6793 40 1 0.1489 1.9270 -5.2543 41 1 0.1246 4.1736 -6.7424 42 1 0.4526 8.6500 -7.2151 43 1 3.1369 0.8614 2.1277 44 1 3.7676 -0.7018 4.0360 45 1 2.8033 -3.0401 3.8319 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690621678.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:58 Heat of formation + Delta-G solvation = -38.799050 kcal Electronic energy + Delta-G solvation = -26405.392584 eV Core-core repulsion = 22549.553217 eV Total energy + Delta-G solvation = -3855.839368 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.03667 -38.69279 -37.86810 -37.00902 -34.31539 -34.08375 -33.66335 -31.73989 -30.85134 -28.75788 -26.76151 -26.39303 -24.82549 -23.81616 -23.02402 -21.12620 -20.23213 -19.49503 -19.46221 -18.46552 -17.63639 -16.69331 -16.29905 -16.03252 -15.64932 -15.54909 -15.16132 -14.90697 -14.69844 -14.27014 -13.81608 -13.69398 -13.33710 -13.16095 -13.10498 -12.86277 -12.78000 -12.63519 -12.44578 -12.41339 -12.24944 -12.19216 -11.92653 -11.78195 -11.65793 -11.56899 -11.21565 -11.09256 -10.74627 -10.64648 -10.02617 -9.84961 -9.62738 -9.02032 -8.77480 -8.68249 -8.44145 -8.28441 -8.22465 -6.35958 -3.87726 0.89300 1.57245 1.96170 2.59186 2.65071 2.97420 3.02068 3.10938 3.22187 3.67217 3.96962 4.05600 4.33691 4.61869 4.66301 4.77520 4.82906 4.92182 4.93970 5.07554 5.10580 5.17173 5.34553 5.39708 5.42553 5.47762 5.48726 5.54250 5.55892 5.64143 5.73214 5.81070 5.83943 5.87106 5.96123 5.99234 6.17804 6.36553 6.44450 6.96278 7.44217 7.52515 7.55257 8.09095 8.22379 8.54050 8.89833 9.36964 9.76565 10.77058 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.015816 B = 0.002207 C = 0.002048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1769.988747 B =12685.180837 C =13668.532877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.043 4.043 3 H 0.117 0.883 4 C 0.514 3.486 5 O -0.537 6.537 6 N -0.709 5.709 7 C 0.135 3.865 8 C 0.068 3.932 9 H 0.084 0.916 10 C -0.181 4.181 11 N -0.664 5.664 12 C 0.047 3.953 13 C 0.448 3.552 14 O -0.564 6.564 15 N -0.590 5.590 16 C -0.306 4.306 17 H 0.120 0.880 18 C 0.041 3.959 19 N -0.880 5.880 20 Si 0.880 3.120 21 H -0.270 1.270 22 H -0.277 1.277 23 H -0.270 1.270 24 C -0.152 4.152 25 C -0.140 4.140 26 C -0.134 4.134 27 C -0.227 4.227 28 S 0.132 5.868 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.061 0.939 32 H 0.410 0.590 33 H 0.067 0.933 34 H 0.068 0.932 35 H 0.063 0.937 36 H 0.061 0.939 37 H 0.062 0.938 38 H 0.355 0.645 39 H 0.046 0.954 40 H 0.087 0.913 41 H 0.370 0.630 42 H 0.274 0.726 43 H 0.139 0.861 44 H 0.137 0.863 45 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.668 -21.231 11.450 24.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.067 4.067 3 H 0.135 0.865 4 C 0.299 3.701 5 O -0.414 6.414 6 N -0.361 5.361 7 C 0.010 3.990 8 C -0.043 4.043 9 H 0.102 0.898 10 C -0.241 4.241 11 N -0.297 5.297 12 C -0.086 4.086 13 C 0.234 3.766 14 O -0.446 6.446 15 N -0.229 5.229 16 C -0.434 4.434 17 H 0.137 0.863 18 C -0.162 4.162 19 N -0.520 5.520 20 Si 0.707 3.293 21 H -0.196 1.196 22 H -0.202 1.202 23 H -0.196 1.196 24 C -0.270 4.270 25 C -0.171 4.171 26 C -0.165 4.165 27 C -0.363 4.363 28 S 0.397 5.603 29 H 0.092 0.908 30 H 0.090 0.910 31 H 0.080 0.920 32 H 0.246 0.754 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.082 0.918 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.176 0.824 39 H 0.064 0.936 40 H 0.105 0.895 41 H 0.203 0.797 42 H 0.084 0.916 43 H 0.157 0.843 44 H 0.155 0.845 45 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -3.689 -22.554 11.825 25.732 hybrid contribution -0.260 1.203 -1.242 1.749 sum -3.949 -21.351 10.583 24.154 Atomic orbital electron populations 1.21847 0.91710 1.02924 1.03597 1.19837 0.97628 1.00268 0.88931 0.86478 1.20365 0.80505 0.84690 0.84585 1.90719 1.37665 1.26330 1.86709 1.45751 1.53485 1.32137 1.04717 1.21318 0.99633 0.94895 0.83143 1.21860 1.00363 0.88617 0.93432 0.89789 1.22435 1.01826 1.01572 0.98231 1.60173 1.07380 1.03937 1.58172 1.21756 0.97552 0.93123 0.96170 1.19699 0.86286 0.86191 0.84469 1.90580 1.28495 1.82116 1.43402 1.42212 1.27791 1.07809 1.45095 1.19422 1.14314 0.79923 1.29781 0.86281 1.25050 0.98222 0.95071 0.97836 1.69617 1.40008 0.99903 1.42452 0.86669 0.83362 0.78542 0.80767 1.19580 1.20179 1.19574 1.23921 1.05590 0.97430 1.00058 1.20107 1.00486 1.01660 0.94846 1.20080 1.02858 0.93165 1.00440 1.25669 1.06672 1.01557 1.02400 1.84190 1.50136 1.09881 1.16124 0.90840 0.91011 0.92030 0.75431 0.91508 0.91386 0.91796 0.91986 0.91877 0.82443 0.93589 0.89507 0.79718 0.91567 0.84334 0.84539 0.82214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.18 9.01 37.16 0.33 -0.84 16 2 C -0.04 -0.45 3.10 -92.92 -0.29 -0.74 16 3 H 0.12 1.13 8.08 -51.93 -0.42 0.71 16 4 C 0.51 6.48 7.12 -10.99 -0.08 6.40 16 5 O -0.54 -8.50 15.25 5.56 0.08 -8.41 16 6 N -0.71 -7.92 5.28 -60.29 -0.32 -8.24 16 7 C 0.13 1.43 5.37 -4.04 -0.02 1.41 16 8 C 0.07 0.67 2.75 -67.71 -0.19 0.48 16 9 H 0.08 0.74 7.80 -51.93 -0.40 0.33 16 10 C -0.18 -1.56 9.16 37.16 0.34 -1.22 16 11 N -0.66 -8.76 5.31 -107.99 -0.57 -9.33 16 12 C 0.05 0.68 5.96 -4.98 -0.03 0.65 16 13 C 0.45 9.48 7.82 -10.98 -0.09 9.40 16 14 O -0.56 -14.38 15.78 5.54 0.09 -14.29 16 15 N -0.59 -13.36 5.09 -10.96 -0.06 -13.42 16 16 C -0.31 -8.39 10.16 -14.94 -0.15 -8.54 16 17 H 0.12 3.76 7.39 -52.48 -0.39 3.38 16 18 C 0.04 1.11 5.50 -17.47 -0.10 1.01 16 19 N -0.88 -25.22 13.96 55.50 0.77 -24.45 16 20 Si 0.88 18.77 27.74 -169.99 -4.71 14.06 16 21 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 22 H -0.28 -5.96 7.11 56.52 0.40 -5.55 16 23 H -0.27 -5.21 6.52 56.52 0.37 -4.84 16 24 C -0.15 -1.72 4.60 -36.00 -0.17 -1.89 16 25 C -0.14 -1.51 10.01 -41.21 -0.41 -1.92 16 26 C -0.13 -1.32 10.18 -41.21 -0.42 -1.74 16 27 C -0.23 -2.20 11.23 29.04 0.33 -1.87 16 28 S 0.13 1.45 22.18 -107.50 -2.38 -0.94 16 29 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.07 0.52 7.56 -51.93 -0.39 0.13 16 31 H 0.06 0.52 8.00 -51.93 -0.42 0.10 16 32 H 0.41 4.32 7.56 -40.82 -0.31 4.01 16 33 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 35 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 36 H 0.06 0.55 7.45 -51.93 -0.39 0.16 16 37 H 0.06 0.56 8.13 -51.93 -0.42 0.14 16 38 H 0.36 5.18 8.17 -39.29 -0.32 4.86 16 39 H 0.05 0.59 7.44 -51.93 -0.39 0.20 16 40 H 0.09 1.08 8.06 -51.93 -0.42 0.66 16 41 H 0.37 7.32 5.76 -40.82 -0.24 7.09 16 42 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 43 H 0.14 1.28 8.06 -52.49 -0.42 0.86 16 44 H 0.14 1.04 8.06 -52.49 -0.42 0.61 16 45 H 0.16 1.15 8.06 -52.49 -0.42 0.73 16 LS Contribution 389.76 15.07 5.87 5.87 Total: -1.00 -33.74 389.76 -8.79 -42.52 By element: Atomic # 1 Polarization: 22.67 SS G_CDS: -6.63 Total: 16.04 kcal Atomic # 6 Polarization: 1.52 SS G_CDS: -0.93 Total: 0.58 kcal Atomic # 7 Polarization: -55.26 SS G_CDS: -0.17 Total: -55.43 kcal Atomic # 8 Polarization: -22.88 SS G_CDS: 0.17 Total: -22.70 kcal Atomic # 14 Polarization: 18.77 SS G_CDS: -4.71 Total: 14.06 kcal Atomic # 16 Polarization: 1.45 SS G_CDS: -2.38 Total: -0.94 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -33.74 -8.79 -42.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690621678.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.725 kcal (2) G-P(sol) polarization free energy of solvation -33.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds