Wall clock time and date at job start Sat Apr 11 2020 05:40:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42894 * 114.00078 * 2 1 4 4 H 1.09005 * 109.47438 * 329.99974 * 3 2 1 5 5 C 1.53005 * 109.47097 * 89.99607 * 3 2 1 6 6 C 1.53000 * 109.47278 * 209.99754 * 3 2 1 7 7 C 1.50691 * 109.47075 * 65.00288 * 6 3 2 8 8 O 1.21285 * 120.00230 * 359.97438 * 7 6 3 9 9 N 1.34780 * 120.00226 * 179.97438 * 7 6 3 10 10 C 1.47062 * 120.80029 * 179.97438 * 9 7 6 11 11 C 1.53295 * 108.60784 * 115.31048 * 10 9 7 12 12 C 1.50992 * 108.95790 * 45.06357 * 11 10 9 13 13 S 1.75959 * 126.02852 * 162.31687 * 12 11 10 14 14 C 1.70908 * 90.30364 * 179.63406 * 13 12 11 15 15 C 1.50706 * 124.92348 * 180.08570 * 14 13 12 16 16 N 1.46498 * 109.46936 * 270.00005 * 15 14 13 17 17 C 1.36937 * 119.99954 * 180.02562 * 16 15 14 18 18 H 1.08000 * 119.99636 * 359.97438 * 17 16 15 19 19 C 1.38809 * 120.00180 * 179.97438 * 17 16 15 20 20 N 1.31619 * 120.00178 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99941 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47202 * 90.00160 * 21 19 17 23 23 H 1.48508 * 109.47186 * 209.99953 * 21 19 17 24 24 H 1.48499 * 109.47563 * 330.00239 * 21 19 17 25 25 N 1.28677 * 110.14692 * 0.06496 * 14 13 12 26 26 C 1.32432 * 117.82620 * 0.07915 * 25 14 13 27 27 C 1.47032 * 120.79813 * 0.02647 * 9 7 6 28 28 H 1.09005 * 109.46884 * 60.00038 * 1 2 3 29 29 H 1.09003 * 109.47189 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47252 * 299.99922 * 1 2 3 31 31 H 1.09003 * 109.46610 * 60.00436 * 5 3 2 32 32 H 1.08997 * 109.47217 * 179.97438 * 5 3 2 33 33 H 1.08992 * 109.47142 * 300.00326 * 5 3 2 34 34 H 1.09004 * 109.47147 * 304.99815 * 6 3 2 35 35 H 1.09003 * 109.47011 * 185.00465 * 6 3 2 36 36 H 1.09000 * 109.61084 * 355.58151 * 10 9 7 37 37 H 1.08996 * 109.76333 * 235.13802 * 10 9 7 38 38 H 1.08995 * 109.56075 * 285.21909 * 11 10 9 39 39 H 1.09002 * 109.55673 * 164.90458 * 11 10 9 40 40 H 1.08997 * 109.47196 * 30.00065 * 15 14 13 41 41 H 1.08993 * 109.46898 * 150.00160 * 15 14 13 42 42 H 0.97001 * 120.00055 * 0.02562 * 16 15 14 43 43 H 0.97002 * 120.00370 * 179.97438 * 20 19 17 44 44 H 1.08991 * 109.82279 * 105.66759 * 27 9 7 45 45 H 1.09007 * 109.80660 * 344.76649 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 1.9994 -0.5138 5 6 2.2176 1.7713 1.4425 6 6 3.3589 1.2632 -0.7212 7 6 3.1417 0.9236 -2.1732 8 8 2.0187 0.7335 -2.5901 9 7 4.1953 0.8311 -3.0086 10 6 4.0035 0.5002 -4.4286 11 6 4.4414 1.7015 -5.2742 12 6 5.7568 2.2206 -4.7449 13 16 6.8744 3.2744 -5.6033 14 6 7.9265 3.2707 -4.2565 15 6 9.2376 4.0103 -4.1838 16 7 10.3141 3.1450 -4.6724 17 6 11.6034 3.6054 -4.6998 18 1 11.8266 4.6065 -4.3616 19 6 12.6235 2.7854 -5.1622 20 7 12.3514 1.5655 -5.5749 21 14 14.3822 3.4137 -5.2003 22 1 15.0489 3.0972 -3.9116 23 1 15.1179 2.7590 -6.3119 24 1 14.3783 4.8841 -5.4075 25 7 7.4367 2.5452 -3.3133 26 6 6.2705 1.9558 -3.5290 27 6 5.5641 1.0574 -2.5219 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 2.8829 1.0774 1.9563 32 1 2.6613 2.7669 1.4426 33 1 1.2568 1.8014 1.9563 34 1 3.9931 0.5051 -0.2616 35 1 3.8427 2.2369 -0.6442 36 1 2.9513 0.2855 -4.6154 37 1 4.6064 -0.3697 -4.6890 38 1 3.6876 2.4863 -5.2113 39 1 4.5624 1.3922 -6.3124 40 1 9.1836 4.9069 -4.8012 41 1 9.4389 4.2923 -3.1504 42 1 10.1135 2.2460 -4.9765 43 1 13.0642 0.9926 -5.8984 44 1 6.0901 0.1062 -2.4422 45 1 5.5338 1.5464 -1.5481 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691801905.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:02 Heat of formation + Delta-G solvation = -22.125984 kcal Electronic energy + Delta-G solvation = -26719.202158 eV Core-core repulsion = 22864.085789 eV Total energy + Delta-G solvation = -3855.116369 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.71029 -39.47869 -38.16563 -36.43266 -34.68429 -33.45747 -32.38718 -31.59368 -29.81797 -28.50783 -26.82943 -26.81807 -25.81459 -23.72814 -23.22296 -21.97216 -21.50957 -19.72088 -18.19996 -18.17345 -17.30232 -17.09334 -16.82632 -16.52527 -15.65653 -15.31365 -15.18585 -14.95281 -14.80236 -14.26161 -14.00259 -13.77231 -13.59775 -13.46600 -13.22281 -13.02235 -12.85406 -12.66636 -12.60189 -12.39719 -12.27056 -12.17963 -11.81596 -11.69095 -11.45398 -11.09733 -10.99026 -10.97541 -10.85767 -10.17347 -10.02230 -9.85477 -9.82312 -9.34718 -9.09196 -8.96031 -8.89922 -8.45444 -7.05498 -5.83143 -3.14806 0.86804 1.51937 1.97734 2.43584 2.64442 2.89340 3.40889 3.45766 3.47561 3.52970 4.02749 4.23253 4.44238 4.54898 4.62764 4.74446 4.83113 4.91810 4.98390 5.03326 5.09626 5.13193 5.22534 5.23312 5.26789 5.29990 5.34388 5.39886 5.49637 5.52635 5.54711 5.62113 5.69643 5.77999 5.83215 5.96474 6.14710 6.16329 6.39254 6.44023 6.97632 7.12284 7.62200 7.92602 7.99441 8.32404 9.44868 9.95719 10.32062 11.39094 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.020672 B = 0.002240 C = 0.002128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1354.178762 B =12497.791681 C =13155.425872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.377 6.377 3 C 0.101 3.899 4 H 0.068 0.932 5 C -0.176 4.176 6 C -0.144 4.144 7 C 0.527 3.473 8 O -0.533 6.533 9 N -0.614 5.614 10 C 0.116 3.884 11 C -0.052 4.052 12 C -0.237 4.237 13 S 0.135 5.865 14 C 0.076 3.924 15 C 0.224 3.776 16 N -0.723 5.723 17 C -0.245 4.245 18 H 0.075 0.925 19 C -0.010 4.010 20 N -0.929 5.929 21 Si 0.912 3.088 22 H -0.288 1.288 23 H -0.291 1.291 24 H -0.280 1.280 25 N -0.464 5.464 26 C 0.046 3.954 27 C 0.193 3.807 28 H 0.045 0.955 29 H 0.081 0.919 30 H 0.035 0.965 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.059 0.941 34 H 0.106 0.894 35 H 0.108 0.892 36 H 0.102 0.898 37 H 0.077 0.923 38 H 0.081 0.919 39 H 0.089 0.911 40 H 0.043 0.957 41 H 0.054 0.946 42 H 0.387 0.613 43 H 0.257 0.743 44 H 0.093 0.907 45 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.614 -0.202 8.057 24.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.296 6.296 3 C 0.043 3.957 4 H 0.086 0.914 5 C -0.233 4.233 6 C -0.183 4.183 7 C 0.315 3.685 8 O -0.410 6.410 9 N -0.348 5.348 10 C -0.008 4.008 11 C -0.093 4.093 12 C -0.358 4.358 13 S 0.393 5.607 14 C -0.203 4.203 15 C 0.094 3.906 16 N -0.369 5.369 17 C -0.376 4.376 18 H 0.093 0.907 19 C -0.206 4.206 20 N -0.577 5.577 21 Si 0.743 3.257 22 H -0.216 1.216 23 H -0.217 1.217 24 H -0.206 1.206 25 N -0.178 5.178 26 C -0.088 4.088 27 C 0.068 3.932 28 H 0.064 0.936 29 H 0.100 0.900 30 H 0.053 0.947 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.078 0.922 34 H 0.124 0.876 35 H 0.126 0.874 36 H 0.120 0.880 37 H 0.096 0.904 38 H 0.100 0.900 39 H 0.108 0.892 40 H 0.060 0.940 41 H 0.071 0.929 42 H 0.221 0.779 43 H 0.067 0.933 44 H 0.111 0.889 45 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -23.602 0.104 7.320 24.711 hybrid contribution 0.665 -0.297 0.417 0.839 sum -22.937 -0.193 7.736 24.207 Atomic orbital electron populations 1.22690 0.81063 1.02418 0.99684 1.87886 1.19760 1.26986 1.94957 1.21783 0.93401 0.85801 0.94748 0.91440 1.22307 1.02649 1.01854 0.96539 1.21938 0.99326 1.04752 0.92324 1.20487 0.83947 0.76079 0.87950 1.90672 1.22771 1.49711 1.77804 1.48087 1.06486 1.70292 1.09968 1.21619 1.03439 0.96426 0.79301 1.20463 0.91216 0.98012 0.99586 1.25848 1.03132 1.08288 0.98581 1.83967 1.12032 1.44109 1.20546 1.27306 1.01786 0.99875 0.91376 1.19337 0.80354 0.91609 0.99316 1.42266 1.02447 1.15044 1.77151 1.19195 0.83468 0.98329 1.36589 0.90736 1.24783 0.98236 0.96125 1.01480 1.69677 1.31967 1.07541 1.48521 0.86125 0.84495 0.77876 0.77250 1.21561 1.21707 1.20604 1.65774 1.10531 1.09441 1.32046 1.20849 0.92279 1.01213 0.94475 1.20253 0.80185 0.97857 0.94954 0.93632 0.90041 0.94651 0.91487 0.91356 0.92158 0.87613 0.87378 0.87966 0.90433 0.90015 0.89243 0.93979 0.92868 0.77941 0.93337 0.88939 0.87852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.32 10.82 101.05 1.09 1.42 16 2 O -0.38 -4.10 9.58 -49.66 -0.48 -4.58 16 3 C 0.10 0.90 2.27 -26.73 -0.06 0.84 16 4 H 0.07 0.63 7.60 -51.93 -0.39 0.24 16 5 C -0.18 -1.18 9.53 37.16 0.35 -0.83 16 6 C -0.14 -1.24 3.81 -27.89 -0.11 -1.34 16 7 C 0.53 6.03 7.58 -10.99 -0.08 5.95 16 8 O -0.53 -7.55 14.84 -8.87 -0.13 -7.69 16 9 N -0.61 -6.75 2.92 -173.04 -0.50 -7.25 16 10 C 0.12 1.20 6.41 -3.58 -0.02 1.18 16 11 C -0.05 -0.55 6.44 -27.59 -0.18 -0.73 16 12 C -0.24 -3.25 6.43 -35.44 -0.23 -3.48 16 13 S 0.14 2.04 23.17 -107.50 -2.49 -0.45 16 14 C 0.08 1.37 6.75 -13.60 -0.09 1.28 16 15 C 0.22 4.55 6.84 -5.19 -0.04 4.51 16 16 N -0.72 -18.31 5.59 -61.09 -0.34 -18.65 16 17 C -0.25 -6.73 9.99 -15.06 -0.15 -6.88 16 18 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 19 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 20 N -0.93 -27.94 13.06 55.49 0.72 -27.21 16 21 Si 0.91 22.05 29.55 -169.99 -5.02 17.02 16 22 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 23 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 24 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 25 N -0.46 -8.21 10.51 -7.27 -0.08 -8.28 16 26 C 0.05 0.67 6.87 -82.80 -0.57 0.10 16 27 C 0.19 2.16 6.65 -4.10 -0.03 2.14 16 28 H 0.05 0.41 8.09 -51.93 -0.42 -0.01 16 29 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.03 0.24 7.87 -51.93 -0.41 -0.17 16 31 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.06 0.38 7.87 -51.93 -0.41 -0.03 16 34 H 0.11 0.81 8.09 -51.93 -0.42 0.39 16 35 H 0.11 0.74 7.57 -51.93 -0.39 0.35 16 36 H 0.10 1.05 7.01 -51.93 -0.36 0.69 16 37 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 39 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 40 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 41 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 42 H 0.39 10.54 7.66 -40.82 -0.31 10.22 16 43 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 44 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 45 H 0.10 0.97 6.15 -51.93 -0.32 0.65 16 LS Contribution 383.75 15.07 5.78 5.78 Total: -1.00 -33.51 383.75 -9.53 -43.04 By element: Atomic # 1 Polarization: 11.29 SS G_CDS: -6.79 Total: 4.50 kcal Atomic # 6 Polarization: 3.98 SS G_CDS: -0.20 Total: 3.77 kcal Atomic # 7 Polarization: -61.20 SS G_CDS: -0.20 Total: -61.40 kcal Atomic # 8 Polarization: -11.66 SS G_CDS: -0.61 Total: -12.27 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.02 kcal Atomic # 16 Polarization: 2.04 SS G_CDS: -2.49 Total: -0.45 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -33.51 -9.53 -43.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691801905.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.913 kcal (2) G-P(sol) polarization free energy of solvation -33.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds