Wall clock time and date at job start Sat Apr 11 2020 05:40:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42894 * 114.00078 * 2 1 4 4 H 1.09005 * 109.47438 * 329.99974 * 3 2 1 5 5 C 1.53005 * 109.47097 * 89.99607 * 3 2 1 6 6 C 1.53000 * 109.47278 * 209.99754 * 3 2 1 7 7 C 1.50691 * 109.47075 * 65.00288 * 6 3 2 8 8 O 1.21285 * 120.00230 * 359.97438 * 7 6 3 9 9 N 1.34780 * 120.00226 * 179.97438 * 7 6 3 10 10 C 1.47062 * 120.80029 * 179.97438 * 9 7 6 11 11 C 1.53295 * 108.60784 * 115.31048 * 10 9 7 12 12 C 1.50992 * 108.95790 * 45.06357 * 11 10 9 13 13 S 1.75959 * 126.02852 * 162.31687 * 12 11 10 14 14 C 1.70908 * 90.30364 * 179.63406 * 13 12 11 15 15 C 1.50706 * 124.92348 * 180.08570 * 14 13 12 16 16 N 1.46498 * 109.46936 * 270.00005 * 15 14 13 17 17 C 1.36937 * 119.99954 * 180.02562 * 16 15 14 18 18 H 1.08000 * 119.99636 * 359.97438 * 17 16 15 19 19 C 1.38809 * 120.00180 * 179.97438 * 17 16 15 20 20 N 1.31619 * 120.00178 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99941 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47202 * 90.00160 * 21 19 17 23 23 H 1.48508 * 109.47186 * 209.99953 * 21 19 17 24 24 H 1.48499 * 109.47563 * 330.00239 * 21 19 17 25 25 N 1.28677 * 110.14692 * 0.06496 * 14 13 12 26 26 C 1.32432 * 117.82620 * 0.07915 * 25 14 13 27 27 C 1.47032 * 120.79813 * 0.02647 * 9 7 6 28 28 H 1.09005 * 109.46884 * 60.00038 * 1 2 3 29 29 H 1.09003 * 109.47189 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47252 * 299.99922 * 1 2 3 31 31 H 1.09003 * 109.46610 * 60.00436 * 5 3 2 32 32 H 1.08997 * 109.47217 * 179.97438 * 5 3 2 33 33 H 1.08992 * 109.47142 * 300.00326 * 5 3 2 34 34 H 1.09004 * 109.47147 * 304.99815 * 6 3 2 35 35 H 1.09003 * 109.47011 * 185.00465 * 6 3 2 36 36 H 1.09000 * 109.61084 * 355.58151 * 10 9 7 37 37 H 1.08996 * 109.76333 * 235.13802 * 10 9 7 38 38 H 1.08995 * 109.56075 * 285.21909 * 11 10 9 39 39 H 1.09002 * 109.55673 * 164.90458 * 11 10 9 40 40 H 1.08997 * 109.47196 * 30.00065 * 15 14 13 41 41 H 1.08993 * 109.46898 * 150.00160 * 15 14 13 42 42 H 0.97001 * 120.00055 * 0.02562 * 16 15 14 43 43 H 0.97002 * 120.00370 * 179.97438 * 20 19 17 44 44 H 1.08991 * 109.82279 * 105.66759 * 27 9 7 45 45 H 1.09007 * 109.80660 * 344.76649 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 1.9994 -0.5138 5 6 2.2176 1.7713 1.4425 6 6 3.3589 1.2632 -0.7212 7 6 3.1417 0.9236 -2.1732 8 8 2.0187 0.7335 -2.5901 9 7 4.1953 0.8311 -3.0086 10 6 4.0035 0.5002 -4.4286 11 6 4.4414 1.7015 -5.2742 12 6 5.7568 2.2206 -4.7449 13 16 6.8744 3.2744 -5.6033 14 6 7.9265 3.2707 -4.2565 15 6 9.2376 4.0103 -4.1838 16 7 10.3141 3.1450 -4.6724 17 6 11.6034 3.6054 -4.6998 18 1 11.8266 4.6065 -4.3616 19 6 12.6235 2.7854 -5.1622 20 7 12.3514 1.5655 -5.5749 21 14 14.3822 3.4137 -5.2003 22 1 15.0489 3.0972 -3.9116 23 1 15.1179 2.7590 -6.3119 24 1 14.3783 4.8841 -5.4075 25 7 7.4367 2.5452 -3.3133 26 6 6.2705 1.9558 -3.5290 27 6 5.5641 1.0574 -2.5219 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 2.8829 1.0774 1.9563 32 1 2.6613 2.7669 1.4426 33 1 1.2568 1.8014 1.9563 34 1 3.9931 0.5051 -0.2616 35 1 3.8427 2.2369 -0.6442 36 1 2.9513 0.2855 -4.6154 37 1 4.6064 -0.3697 -4.6890 38 1 3.6876 2.4863 -5.2113 39 1 4.5624 1.3922 -6.3124 40 1 9.1836 4.9069 -4.8012 41 1 9.4389 4.2923 -3.1504 42 1 10.1135 2.2460 -4.9765 43 1 13.0642 0.9926 -5.8984 44 1 6.0901 0.1062 -2.4422 45 1 5.5338 1.5464 -1.5481 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691801905.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:02 Heat of formation + Delta-G solvation = -44.123738 kcal Electronic energy + Delta-G solvation = -26720.156052 eV Core-core repulsion = 22864.085789 eV Total energy + Delta-G solvation = -3856.070263 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.68022 -40.53114 -38.94005 -37.51890 -36.43857 -34.25508 -33.59405 -33.04157 -31.15818 -29.18693 -28.41762 -27.49778 -26.74935 -25.38430 -24.31288 -23.32431 -22.32673 -20.71860 -19.58054 -19.22170 -18.93882 -17.85951 -17.77720 -17.41622 -16.81873 -16.60667 -16.11154 -15.99000 -15.82777 -15.67293 -15.27147 -14.93264 -14.91043 -14.69021 -14.16015 -14.02710 -13.81039 -13.78911 -13.54284 -13.41335 -13.12609 -12.96464 -12.95126 -12.89897 -12.76521 -12.44653 -12.25719 -12.13460 -12.11362 -11.87564 -11.64730 -11.03315 -10.92184 -10.60260 -10.51410 -10.22233 -9.86440 -9.62593 -9.09695 -7.96831 -5.29006 -0.36070 0.32395 0.75316 1.49445 1.51729 1.56969 1.59850 1.66393 1.80425 2.56234 2.88604 2.94587 3.37785 3.41455 3.68190 3.78909 3.83341 3.88758 4.07309 4.16490 4.18772 4.25727 4.28861 4.35195 4.50335 4.51106 4.54124 4.58615 4.60758 4.70410 4.73196 4.77953 4.82826 4.85569 4.87403 4.91274 5.03587 5.14825 5.28862 5.33808 5.47983 6.21326 6.23703 6.33215 6.73861 7.08104 7.29161 7.95252 8.22216 9.26442 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.020672 B = 0.002240 C = 0.002128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1354.178762 B =12497.791681 C =13155.425872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.401 6.401 3 C 0.097 3.903 4 H 0.058 0.942 5 C -0.170 4.170 6 C -0.142 4.142 7 C 0.523 3.477 8 O -0.564 6.564 9 N -0.613 5.613 10 C 0.115 3.885 11 C -0.049 4.049 12 C -0.225 4.225 13 S 0.160 5.840 14 C 0.038 3.962 15 C 0.227 3.773 16 N -0.736 5.736 17 C -0.247 4.247 18 H 0.085 0.915 19 C -0.073 4.073 20 N -0.969 5.969 21 Si 0.980 3.020 22 H -0.287 1.287 23 H -0.296 1.296 24 H -0.265 1.265 25 N -0.479 5.479 26 C 0.028 3.972 27 C 0.198 3.802 28 H 0.034 0.966 29 H 0.088 0.912 30 H 0.052 0.948 31 H 0.067 0.933 32 H 0.082 0.918 33 H 0.063 0.937 34 H 0.118 0.882 35 H 0.129 0.871 36 H 0.103 0.897 37 H 0.085 0.915 38 H 0.090 0.910 39 H 0.108 0.892 40 H 0.056 0.944 41 H 0.050 0.950 42 H 0.373 0.627 43 H 0.252 0.748 44 H 0.099 0.901 45 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.366 0.470 8.703 25.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.321 6.321 3 C 0.039 3.961 4 H 0.076 0.924 5 C -0.227 4.227 6 C -0.182 4.182 7 C 0.314 3.686 8 O -0.443 6.443 9 N -0.346 5.346 10 C -0.009 4.009 11 C -0.089 4.089 12 C -0.347 4.347 13 S 0.418 5.582 14 C -0.240 4.240 15 C 0.098 3.902 16 N -0.380 5.380 17 C -0.379 4.379 18 H 0.103 0.897 19 C -0.266 4.266 20 N -0.619 5.619 21 Si 0.808 3.192 22 H -0.214 1.214 23 H -0.223 1.223 24 H -0.189 1.189 25 N -0.194 5.194 26 C -0.105 4.105 27 C 0.072 3.928 28 H 0.053 0.947 29 H 0.107 0.893 30 H 0.071 0.929 31 H 0.086 0.914 32 H 0.100 0.900 33 H 0.082 0.918 34 H 0.136 0.864 35 H 0.146 0.854 36 H 0.122 0.878 37 H 0.103 0.897 38 H 0.108 0.892 39 H 0.127 0.873 40 H 0.074 0.926 41 H 0.068 0.932 42 H 0.205 0.795 43 H 0.061 0.939 44 H 0.117 0.883 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -24.364 0.826 7.988 25.654 hybrid contribution 0.735 -0.501 0.202 0.912 sum -23.630 0.326 8.190 25.011 Atomic orbital electron populations 1.22767 0.80249 1.03049 0.99963 1.87843 1.20829 1.28238 1.95149 1.21904 0.93209 0.84980 0.96010 0.92373 1.22259 1.03024 1.02510 0.94940 1.22033 0.99667 1.06154 0.90321 1.20979 0.83416 0.75276 0.88961 1.90660 1.23913 1.51158 1.78535 1.48141 1.06349 1.69906 1.10249 1.21679 1.03659 0.96508 0.79094 1.20595 0.89533 0.98250 1.00550 1.26319 1.03623 1.06747 0.97982 1.83777 1.11313 1.44070 1.19059 1.26852 1.02098 1.01739 0.93321 1.19301 0.80472 0.91527 0.98922 1.42431 1.03167 1.15027 1.77384 1.19648 0.84566 0.98623 1.35032 0.89681 1.25648 1.02385 0.96473 1.02074 1.69841 1.32840 1.08903 1.50342 0.85055 0.79393 0.77994 0.76750 1.21424 1.22277 1.18930 1.65734 1.11709 1.09312 1.32649 1.21308 0.91747 1.01769 0.95726 1.20350 0.79853 0.97655 0.94905 0.94743 0.89328 0.92930 0.91401 0.89959 0.91818 0.86422 0.85351 0.87840 0.89717 0.89178 0.87339 0.92585 0.93191 0.79537 0.93910 0.88276 0.85861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.59 10.82 113.37 1.23 1.81 16 2 O -0.40 -8.36 9.58 -135.19 -1.29 -9.66 16 3 C 0.10 1.60 2.27 30.60 0.07 1.67 16 4 H 0.06 1.04 7.60 -2.38 -0.02 1.02 16 5 C -0.17 -1.94 9.53 71.98 0.69 -1.26 16 6 C -0.14 -2.17 3.81 29.85 0.11 -2.06 16 7 C 0.52 11.19 7.58 87.65 0.66 11.86 16 8 O -0.56 -15.53 14.84 10.75 0.16 -15.37 16 9 N -0.61 -12.32 2.92 -819.76 -2.39 -14.72 16 10 C 0.11 2.15 6.41 86.37 0.55 2.70 16 11 C -0.05 -0.92 6.44 30.04 0.19 -0.73 16 12 C -0.22 -5.79 6.43 24.95 0.16 -5.63 16 13 S 0.16 4.65 23.17 -56.49 -1.31 3.35 16 14 C 0.04 1.36 6.75 88.57 0.60 1.96 16 15 C 0.23 9.21 6.84 85.64 0.59 9.79 16 16 N -0.74 -37.65 5.59 -347.19 -1.94 -39.59 16 17 C -0.25 -13.59 9.99 84.03 0.84 -12.75 16 18 H 0.09 4.38 7.83 -2.91 -0.02 4.36 16 19 C -0.07 -4.17 5.50 84.86 0.47 -3.71 16 20 N -0.97 -59.26 13.06 21.65 0.28 -58.98 16 21 Si 0.98 45.43 29.55 68.60 2.03 47.46 16 22 H -0.29 -13.14 7.11 99.48 0.71 -12.44 16 23 H -0.30 -13.86 7.11 99.48 0.71 -13.16 16 24 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 25 N -0.48 -16.65 10.51 -176.92 -1.86 -18.51 16 26 C 0.03 0.77 6.87 42.16 0.29 1.06 16 27 C 0.20 4.05 6.65 86.05 0.57 4.62 16 28 H 0.03 0.62 8.09 -2.38 -0.02 0.60 16 29 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.05 0.65 7.87 -2.39 -0.02 0.63 16 31 H 0.07 0.77 8.14 -2.39 -0.02 0.76 16 32 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.06 0.68 7.87 -2.39 -0.02 0.66 16 34 H 0.12 1.53 8.09 -2.38 -0.02 1.51 16 35 H 0.13 1.42 7.57 -2.39 -0.02 1.40 16 36 H 0.10 1.97 7.01 -2.39 -0.02 1.96 16 37 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 39 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 40 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 41 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 42 H 0.37 20.78 7.66 -92.71 -0.71 20.07 16 43 H 0.25 14.91 8.31 -92.71 -0.77 14.14 16 44 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 45 H 0.12 2.00 6.15 -2.38 -0.01 1.99 16 Total: -1.00 -72.23 383.75 0.99 -71.24 By element: Atomic # 1 Polarization: 25.14 SS G_CDS: 0.30 Total: 25.44 kcal Atomic # 6 Polarization: 2.33 SS G_CDS: 7.02 Total: 9.35 kcal Atomic # 7 Polarization: -125.88 SS G_CDS: -5.91 Total: -131.79 kcal Atomic # 8 Polarization: -23.89 SS G_CDS: -1.14 Total: -25.03 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.46 kcal Atomic # 16 Polarization: 4.65 SS G_CDS: -1.31 Total: 3.35 kcal Total: -72.23 0.99 -71.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691801905.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.112 kcal (2) G-P(sol) polarization free energy of solvation -72.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds