Wall clock time and date at job start Sat Apr 11 2020 05:40:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42898 * 113.99771 * 2 1 4 4 H 1.09003 * 109.47262 * 29.99817 * 3 2 1 5 5 C 1.53000 * 109.47221 * 270.00140 * 3 2 1 6 6 C 1.52999 * 109.47174 * 149.99953 * 3 2 1 7 7 C 1.50696 * 109.47402 * 294.99898 * 6 3 2 8 8 O 1.21288 * 120.00013 * 0.02562 * 7 6 3 9 9 N 1.34775 * 120.00368 * 179.97438 * 7 6 3 10 10 C 1.47062 * 120.79987 * 179.97438 * 9 7 6 11 11 C 1.53295 * 108.60784 * 115.26742 * 10 9 7 12 12 C 1.50992 * 108.95790 * 45.06357 * 11 10 9 13 13 S 1.75959 * 126.02852 * 162.31687 * 12 11 10 14 14 C 1.70908 * 90.30364 * 179.63406 * 13 12 11 15 15 C 1.50706 * 124.92348 * 180.08570 * 14 13 12 16 16 N 1.46498 * 109.46936 * 270.00005 * 15 14 13 17 17 C 1.36937 * 119.99954 * 180.02562 * 16 15 14 18 18 H 1.08000 * 119.99636 * 359.97438 * 17 16 15 19 19 C 1.38809 * 120.00180 * 179.97438 * 17 16 15 20 20 N 1.31619 * 120.00178 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99941 * 179.97438 * 19 17 16 22 22 H 1.48495 * 109.47447 * 0.02562 * 21 19 17 23 23 H 1.48506 * 109.47049 * 120.00098 * 21 19 17 24 24 H 1.48507 * 109.47431 * 240.00139 * 21 19 17 25 25 N 1.28677 * 110.14692 * 0.06496 * 14 13 12 26 26 C 1.32432 * 117.82620 * 0.07915 * 25 14 13 27 27 C 1.47032 * 120.79855 * 359.97438 * 9 7 6 28 28 H 1.09000 * 109.47002 * 299.99504 * 1 2 3 29 29 H 1.08997 * 109.47541 * 60.00090 * 1 2 3 30 30 H 1.09009 * 109.46884 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46739 * 299.99997 * 5 3 2 32 32 H 1.08995 * 109.46925 * 59.99775 * 5 3 2 33 33 H 1.09004 * 109.47229 * 180.02562 * 5 3 2 34 34 H 1.09005 * 109.46846 * 175.00172 * 6 3 2 35 35 H 1.08995 * 109.47258 * 55.00460 * 6 3 2 36 36 H 1.09000 * 109.61084 * 355.53844 * 10 9 7 37 37 H 1.08993 * 109.62093 * 235.00845 * 10 9 7 38 38 H 1.08995 * 109.56075 * 285.21909 * 11 10 9 39 39 H 1.09002 * 109.55673 * 164.90458 * 11 10 9 40 40 H 1.08997 * 109.47196 * 30.00065 * 15 14 13 41 41 H 1.08993 * 109.46898 * 150.00160 * 15 14 13 42 42 H 0.97001 * 120.00055 * 0.02562 * 16 15 14 43 43 H 0.97002 * 120.00370 * 179.97438 * 20 19 17 44 44 H 1.08991 * 109.82279 * 105.71065 * 27 9 7 45 45 H 1.09007 * 109.80660 * 344.80955 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3448 1.9994 0.5138 5 6 2.2175 1.7714 -1.4425 6 6 3.3588 1.2633 0.7213 7 6 3.1416 0.9237 2.1733 8 8 2.0186 0.7336 2.5902 9 7 4.1952 0.8302 3.0085 10 6 4.0034 0.5004 4.4287 11 6 4.6623 -0.8549 4.7095 12 6 6.0249 -0.8819 4.0595 13 16 7.3303 -1.9994 4.4382 14 6 8.3182 -1.2604 3.2555 15 6 9.7292 -1.6761 2.9276 16 7 10.6664 -0.9312 3.7720 17 6 12.0139 -1.1429 3.6509 18 1 12.3857 -1.8592 2.9333 19 6 12.9020 -0.4367 4.4506 20 7 12.4490 0.4360 5.3255 21 14 14.7401 -0.7260 4.2859 22 1 14.9883 -1.7498 3.2393 23 1 15.4088 0.5438 3.9040 24 1 15.2846 -1.2015 5.5831 25 7 7.6824 -0.2979 2.6853 26 6 6.4441 -0.0525 3.0854 27 6 5.5642 1.0556 2.5216 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0278 0.0005 31 1 2.8828 1.0775 -1.9563 32 1 1.2567 1.8014 -1.9563 33 1 2.6613 2.7670 -1.4425 34 1 3.8425 2.2372 0.6443 35 1 3.9931 0.5053 0.2617 36 1 2.9377 0.4419 4.6500 37 1 4.4667 1.2679 5.0485 38 1 4.0454 -1.6531 4.2968 39 1 4.7685 -0.9931 5.7855 40 1 9.8452 -2.7443 3.1109 41 1 9.9364 -1.4628 1.8790 42 1 10.3325 -0.2881 4.4168 43 1 13.0695 0.9292 5.8846 44 1 5.9241 2.0249 2.8661 45 1 5.5791 1.0210 1.4322 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691801907.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:05 Heat of formation + Delta-G solvation = -22.109710 kcal Electronic energy + Delta-G solvation = -26776.137600 eV Core-core repulsion = 22921.021937 eV Total energy + Delta-G solvation = -3855.115664 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.70348 -39.46603 -38.15940 -36.42644 -34.67700 -33.45431 -32.37766 -31.58496 -29.80923 -28.50650 -26.82053 -26.81074 -25.80559 -23.72154 -23.21663 -21.96719 -21.49860 -19.71343 -18.20272 -18.15295 -17.25658 -17.19289 -16.75558 -16.50649 -15.68580 -15.31658 -15.09706 -14.97095 -14.79113 -14.29053 -14.01920 -13.67989 -13.65684 -13.42937 -13.20153 -13.02533 -12.87506 -12.66653 -12.58881 -12.38294 -12.25540 -12.18116 -11.80473 -11.68264 -11.45631 -11.08716 -10.98222 -10.95823 -10.87180 -10.13098 -10.02217 -9.85422 -9.81670 -9.33088 -9.08091 -8.95706 -8.89065 -8.43464 -7.04739 -5.82853 -3.14322 0.89033 1.53895 1.99708 2.42363 2.65917 2.91317 3.40742 3.46314 3.48677 3.54222 4.03723 4.23855 4.43996 4.55355 4.63920 4.75949 4.81548 4.92338 5.01181 5.04348 5.09902 5.12280 5.21529 5.24605 5.28194 5.30981 5.33419 5.39334 5.50222 5.53308 5.55094 5.62472 5.70878 5.79751 5.83462 5.97339 6.15213 6.17814 6.40990 6.45526 6.98733 7.12441 7.63352 7.92972 8.00906 8.32773 9.45344 9.96306 10.32720 11.39501 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.020391 B = 0.002281 C = 0.002176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1372.825568 B =12271.220897 C =12863.452273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.377 6.377 3 C 0.101 3.899 4 H 0.068 0.932 5 C -0.176 4.176 6 C -0.144 4.144 7 C 0.526 3.474 8 O -0.533 6.533 9 N -0.614 5.614 10 C 0.116 3.884 11 C -0.053 4.053 12 C -0.236 4.236 13 S 0.135 5.865 14 C 0.076 3.924 15 C 0.224 3.776 16 N -0.723 5.723 17 C -0.244 4.244 18 H 0.075 0.925 19 C -0.010 4.010 20 N -0.929 5.929 21 Si 0.912 3.088 22 H -0.279 1.279 23 H -0.291 1.291 24 H -0.291 1.291 25 N -0.464 5.464 26 C 0.045 3.955 27 C 0.193 3.807 28 H 0.045 0.955 29 H 0.035 0.965 30 H 0.081 0.919 31 H 0.066 0.934 32 H 0.059 0.941 33 H 0.068 0.932 34 H 0.109 0.891 35 H 0.105 0.895 36 H 0.102 0.898 37 H 0.077 0.923 38 H 0.082 0.918 39 H 0.089 0.911 40 H 0.043 0.957 41 H 0.054 0.946 42 H 0.387 0.613 43 H 0.256 0.744 44 H 0.092 0.908 45 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.781 1.328 -7.755 25.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.296 6.296 3 C 0.043 3.957 4 H 0.086 0.914 5 C -0.234 4.234 6 C -0.184 4.184 7 C 0.315 3.685 8 O -0.410 6.410 9 N -0.349 5.349 10 C -0.007 4.007 11 C -0.093 4.093 12 C -0.358 4.358 13 S 0.394 5.606 14 C -0.204 4.204 15 C 0.094 3.906 16 N -0.369 5.369 17 C -0.374 4.374 18 H 0.093 0.907 19 C -0.207 4.207 20 N -0.577 5.577 21 Si 0.742 3.258 22 H -0.204 1.204 23 H -0.218 1.218 24 H -0.218 1.218 25 N -0.178 5.178 26 C -0.088 4.088 27 C 0.067 3.933 28 H 0.064 0.936 29 H 0.054 0.946 30 H 0.099 0.901 31 H 0.085 0.915 32 H 0.078 0.922 33 H 0.087 0.913 34 H 0.127 0.873 35 H 0.123 0.877 36 H 0.120 0.880 37 H 0.095 0.905 38 H 0.101 0.899 39 H 0.107 0.893 40 H 0.060 0.940 41 H 0.072 0.928 42 H 0.220 0.780 43 H 0.066 0.934 44 H 0.110 0.890 45 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -23.664 0.412 -7.301 24.769 hybrid contribution 0.549 0.961 -0.129 1.115 sum -23.115 1.373 -7.430 24.318 Atomic orbital electron populations 1.22689 0.81071 1.02433 0.99656 1.87902 1.19752 1.26970 1.94947 1.21785 0.93389 0.85824 0.94739 0.91401 1.22309 1.02655 1.01823 0.96569 1.21941 0.99334 1.04737 0.92347 1.20492 0.84012 0.76150 0.87833 1.90672 1.22870 1.49808 1.77607 1.48099 1.06339 1.70513 1.09903 1.21627 1.02513 0.95577 0.81026 1.20463 0.89789 0.98683 1.00392 1.25842 1.01508 1.03476 1.04934 1.83960 1.04456 1.33686 1.38524 1.27296 1.01937 0.94989 0.96151 1.19338 0.79526 0.95297 0.96463 1.42274 1.02117 1.48453 1.44076 1.19246 0.81904 1.19068 1.17226 0.90677 1.24782 0.98253 0.98910 0.98729 1.69688 1.33609 1.28698 1.25739 0.86056 0.85085 0.77368 0.77268 1.20392 1.21759 1.21772 1.65770 1.06490 1.16725 1.28807 1.20830 0.91545 0.99510 0.96955 1.20256 0.78460 0.94886 0.99671 0.93631 0.94648 0.90057 0.91498 0.92162 0.91349 0.87332 0.87657 0.87974 0.90452 0.89934 0.89265 0.93958 0.92848 0.77951 0.93405 0.88965 0.87835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.33 10.82 101.05 1.09 1.42 16 2 O -0.38 -4.23 9.58 -49.66 -0.48 -4.71 16 3 C 0.10 0.90 2.27 -26.73 -0.06 0.84 16 4 H 0.07 0.61 7.60 -51.93 -0.39 0.22 16 5 C -0.18 -1.18 9.53 37.16 0.35 -0.82 16 6 C -0.14 -1.24 3.81 -27.89 -0.11 -1.34 16 7 C 0.53 6.02 7.58 -10.99 -0.08 5.94 16 8 O -0.53 -7.55 14.85 -8.87 -0.13 -7.68 16 9 N -0.61 -6.74 2.92 -173.05 -0.50 -7.25 16 10 C 0.12 1.20 6.41 -3.58 -0.02 1.18 16 11 C -0.05 -0.58 6.44 -27.59 -0.18 -0.75 16 12 C -0.24 -3.32 6.43 -35.44 -0.23 -3.54 16 13 S 0.14 2.09 23.17 -107.50 -2.49 -0.41 16 14 C 0.08 1.39 6.75 -13.60 -0.09 1.29 16 15 C 0.22 4.59 6.84 -5.19 -0.04 4.56 16 16 N -0.72 -18.39 5.59 -61.09 -0.34 -18.73 16 17 C -0.24 -6.71 9.99 -15.06 -0.15 -6.86 16 18 H 0.08 1.98 7.83 -52.49 -0.41 1.57 16 19 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 20 N -0.93 -27.97 13.06 55.49 0.72 -27.25 16 21 Si 0.91 22.09 29.55 -169.99 -5.02 17.07 16 22 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 23 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 24 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 25 N -0.46 -8.32 10.51 -7.28 -0.08 -8.40 16 26 C 0.05 0.68 6.87 -82.81 -0.57 0.11 16 27 C 0.19 2.16 6.65 -4.10 -0.03 2.13 16 28 H 0.05 0.41 8.08 -51.93 -0.42 -0.01 16 29 H 0.03 0.24 7.87 -51.93 -0.41 -0.17 16 30 H 0.08 0.63 8.14 -51.92 -0.42 0.21 16 31 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.38 7.87 -51.93 -0.41 -0.03 16 33 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.11 0.65 8.09 -51.93 -0.42 0.23 16 35 H 0.11 0.90 7.57 -51.93 -0.39 0.51 16 36 H 0.10 1.05 7.01 -51.93 -0.36 0.68 16 37 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 42 H 0.39 10.56 7.66 -40.82 -0.31 10.25 16 43 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 44 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 45 H 0.10 0.99 6.15 -51.93 -0.32 0.67 16 LS Contribution 383.75 15.07 5.78 5.78 Total: -1.00 -33.78 383.75 -9.53 -43.31 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: -6.79 Total: 4.51 kcal Atomic # 6 Polarization: 3.96 SS G_CDS: -0.20 Total: 3.76 kcal Atomic # 7 Polarization: -61.43 SS G_CDS: -0.20 Total: -61.63 kcal Atomic # 8 Polarization: -11.78 SS G_CDS: -0.61 Total: -12.39 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Atomic # 16 Polarization: 2.09 SS G_CDS: -2.49 Total: -0.41 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -33.78 -9.53 -43.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691801907.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.197 kcal (2) G-P(sol) polarization free energy of solvation -33.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds