Wall clock time and date at job start Sat Apr 11 2020 05:40:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42898 * 113.99771 * 2 1 4 4 H 1.09003 * 109.47262 * 29.99817 * 3 2 1 5 5 C 1.53000 * 109.47221 * 270.00140 * 3 2 1 6 6 C 1.52999 * 109.47174 * 149.99953 * 3 2 1 7 7 C 1.50696 * 109.47402 * 294.99898 * 6 3 2 8 8 O 1.21288 * 120.00013 * 0.02562 * 7 6 3 9 9 N 1.34775 * 120.00368 * 179.97438 * 7 6 3 10 10 C 1.47062 * 120.79987 * 179.97438 * 9 7 6 11 11 C 1.53295 * 108.60784 * 115.26742 * 10 9 7 12 12 C 1.50992 * 108.95790 * 45.06357 * 11 10 9 13 13 S 1.75959 * 126.02852 * 162.31687 * 12 11 10 14 14 C 1.70908 * 90.30364 * 179.63406 * 13 12 11 15 15 C 1.50706 * 124.92348 * 180.08570 * 14 13 12 16 16 N 1.46498 * 109.46936 * 270.00005 * 15 14 13 17 17 C 1.36937 * 119.99954 * 180.02562 * 16 15 14 18 18 H 1.08000 * 119.99636 * 359.97438 * 17 16 15 19 19 C 1.38809 * 120.00180 * 179.97438 * 17 16 15 20 20 N 1.31619 * 120.00178 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99941 * 179.97438 * 19 17 16 22 22 H 1.48495 * 109.47447 * 0.02562 * 21 19 17 23 23 H 1.48506 * 109.47049 * 120.00098 * 21 19 17 24 24 H 1.48507 * 109.47431 * 240.00139 * 21 19 17 25 25 N 1.28677 * 110.14692 * 0.06496 * 14 13 12 26 26 C 1.32432 * 117.82620 * 0.07915 * 25 14 13 27 27 C 1.47032 * 120.79855 * 359.97438 * 9 7 6 28 28 H 1.09000 * 109.47002 * 299.99504 * 1 2 3 29 29 H 1.08997 * 109.47541 * 60.00090 * 1 2 3 30 30 H 1.09009 * 109.46884 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46739 * 299.99997 * 5 3 2 32 32 H 1.08995 * 109.46925 * 59.99775 * 5 3 2 33 33 H 1.09004 * 109.47229 * 180.02562 * 5 3 2 34 34 H 1.09005 * 109.46846 * 175.00172 * 6 3 2 35 35 H 1.08995 * 109.47258 * 55.00460 * 6 3 2 36 36 H 1.09000 * 109.61084 * 355.53844 * 10 9 7 37 37 H 1.08993 * 109.62093 * 235.00845 * 10 9 7 38 38 H 1.08995 * 109.56075 * 285.21909 * 11 10 9 39 39 H 1.09002 * 109.55673 * 164.90458 * 11 10 9 40 40 H 1.08997 * 109.47196 * 30.00065 * 15 14 13 41 41 H 1.08993 * 109.46898 * 150.00160 * 15 14 13 42 42 H 0.97001 * 120.00055 * 0.02562 * 16 15 14 43 43 H 0.97002 * 120.00370 * 179.97438 * 20 19 17 44 44 H 1.08991 * 109.82279 * 105.71065 * 27 9 7 45 45 H 1.09007 * 109.80660 * 344.80955 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3448 1.9994 0.5138 5 6 2.2175 1.7714 -1.4425 6 6 3.3588 1.2633 0.7213 7 6 3.1416 0.9237 2.1733 8 8 2.0186 0.7336 2.5902 9 7 4.1952 0.8302 3.0085 10 6 4.0034 0.5004 4.4287 11 6 4.6623 -0.8549 4.7095 12 6 6.0249 -0.8819 4.0595 13 16 7.3303 -1.9994 4.4382 14 6 8.3182 -1.2604 3.2555 15 6 9.7292 -1.6761 2.9276 16 7 10.6664 -0.9312 3.7720 17 6 12.0139 -1.1429 3.6509 18 1 12.3857 -1.8592 2.9333 19 6 12.9020 -0.4367 4.4506 20 7 12.4490 0.4360 5.3255 21 14 14.7401 -0.7260 4.2859 22 1 14.9883 -1.7498 3.2393 23 1 15.4088 0.5438 3.9040 24 1 15.2846 -1.2015 5.5831 25 7 7.6824 -0.2979 2.6853 26 6 6.4441 -0.0525 3.0854 27 6 5.5642 1.0556 2.5216 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0278 0.0005 31 1 2.8828 1.0775 -1.9563 32 1 1.2567 1.8014 -1.9563 33 1 2.6613 2.7670 -1.4425 34 1 3.8425 2.2372 0.6443 35 1 3.9931 0.5053 0.2617 36 1 2.9377 0.4419 4.6500 37 1 4.4667 1.2679 5.0485 38 1 4.0454 -1.6531 4.2968 39 1 4.7685 -0.9931 5.7855 40 1 9.8452 -2.7443 3.1109 41 1 9.9364 -1.4628 1.8790 42 1 10.3325 -0.2881 4.4168 43 1 13.0695 0.9292 5.8846 44 1 5.9241 2.0249 2.8661 45 1 5.5791 1.0210 1.4322 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691801907.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:04 Heat of formation + Delta-G solvation = -44.404259 kcal Electronic energy + Delta-G solvation = -26777.104364 eV Core-core repulsion = 22921.021937 eV Total energy + Delta-G solvation = -3856.082428 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.67730 -40.52952 -38.94173 -37.51930 -36.44134 -34.25507 -33.59520 -33.04061 -31.15755 -29.18304 -28.41965 -27.50258 -26.74727 -25.38822 -24.31726 -23.32949 -22.32045 -20.71588 -19.58412 -19.22875 -18.93450 -17.96033 -17.67598 -17.40370 -16.82230 -16.62918 -16.10252 -15.98563 -15.81050 -15.66286 -15.28927 -14.98644 -14.91973 -14.65430 -14.12601 -14.03439 -13.82593 -13.80560 -13.51280 -13.44970 -13.09433 -12.96819 -12.95161 -12.90236 -12.79527 -12.44295 -12.26878 -12.12921 -12.07870 -11.87303 -11.63249 -11.04969 -10.91980 -10.60726 -10.51705 -10.22564 -9.86180 -9.62671 -9.09920 -7.97145 -5.29272 -0.36218 0.32057 0.75108 1.49490 1.50579 1.55614 1.60675 1.66710 1.82621 2.55953 2.89972 2.94388 3.37617 3.41975 3.68158 3.79318 3.83337 3.88985 4.06789 4.13150 4.21437 4.25389 4.30913 4.36517 4.49407 4.50327 4.55504 4.56664 4.61173 4.70499 4.73234 4.77532 4.83046 4.85539 4.87079 4.90688 5.04131 5.14941 5.29389 5.34343 5.48108 6.21220 6.24184 6.34029 6.73400 7.08540 7.29048 7.94793 8.22080 9.26362 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.020391 B = 0.002281 C = 0.002176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1372.825568 B =12271.220897 C =12863.452273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.405 6.405 3 C 0.096 3.904 4 H 0.063 0.937 5 C -0.170 4.170 6 C -0.143 4.143 7 C 0.523 3.477 8 O -0.564 6.564 9 N -0.613 5.613 10 C 0.115 3.885 11 C -0.050 4.050 12 C -0.226 4.226 13 S 0.158 5.842 14 C 0.038 3.962 15 C 0.227 3.773 16 N -0.736 5.736 17 C -0.246 4.246 18 H 0.085 0.915 19 C -0.073 4.073 20 N -0.969 5.969 21 Si 0.980 3.020 22 H -0.262 1.262 23 H -0.294 1.294 24 H -0.292 1.292 25 N -0.479 5.479 26 C 0.027 3.973 27 C 0.198 3.802 28 H 0.036 0.964 29 H 0.053 0.947 30 H 0.086 0.914 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.086 0.914 34 H 0.139 0.861 35 H 0.108 0.892 36 H 0.104 0.896 37 H 0.088 0.912 38 H 0.086 0.914 39 H 0.109 0.891 40 H 0.056 0.944 41 H 0.050 0.950 42 H 0.373 0.627 43 H 0.252 0.748 44 H 0.105 0.895 45 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.446 1.424 -8.548 25.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.324 6.324 3 C 0.038 3.962 4 H 0.081 0.919 5 C -0.227 4.227 6 C -0.182 4.182 7 C 0.313 3.687 8 O -0.443 6.443 9 N -0.347 5.347 10 C -0.009 4.009 11 C -0.091 4.091 12 C -0.347 4.347 13 S 0.416 5.584 14 C -0.240 4.240 15 C 0.098 3.902 16 N -0.380 5.380 17 C -0.378 4.378 18 H 0.103 0.897 19 C -0.266 4.266 20 N -0.619 5.619 21 Si 0.808 3.192 22 H -0.186 1.186 23 H -0.221 1.221 24 H -0.219 1.219 25 N -0.194 5.194 26 C -0.106 4.106 27 C 0.072 3.928 28 H 0.054 0.946 29 H 0.072 0.928 30 H 0.104 0.896 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.105 0.895 34 H 0.156 0.844 35 H 0.126 0.874 36 H 0.122 0.878 37 H 0.107 0.893 38 H 0.104 0.896 39 H 0.127 0.873 40 H 0.074 0.926 41 H 0.068 0.932 42 H 0.205 0.795 43 H 0.061 0.939 44 H 0.123 0.877 45 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -24.333 0.476 -8.135 25.661 hybrid contribution 0.599 0.893 0.123 1.082 sum -23.734 1.369 -8.011 25.087 Atomic orbital electron populations 1.22762 0.80228 1.02956 1.00052 1.87856 1.20886 1.28512 1.95162 1.21938 0.93248 0.84932 0.96065 0.91921 1.22263 1.02954 1.02607 0.94904 1.22048 0.99567 1.06350 0.90219 1.20987 0.83498 0.75366 0.88814 1.90661 1.24028 1.51253 1.78329 1.48155 1.06187 1.70193 1.10133 1.21694 1.02632 0.95465 0.81062 1.20599 0.87865 0.99244 1.01359 1.26318 1.02172 1.02154 1.04094 1.83773 1.04217 1.33425 1.37015 1.26855 1.01745 0.96860 0.98549 1.19297 0.80328 0.95255 0.95338 1.42432 1.02371 1.48617 1.44551 1.19683 0.83133 1.18401 1.16551 0.89711 1.25643 1.02736 0.99241 0.98945 1.69846 1.34848 1.30174 1.27052 0.84991 0.79615 0.77260 0.77336 1.18632 1.22125 1.21948 1.65737 1.07779 1.16583 1.29290 1.21350 0.91038 1.00777 0.97456 1.20380 0.77751 0.93999 1.00661 0.94576 0.92848 0.89574 0.91825 0.91843 0.89520 0.84357 0.87434 0.87818 0.89332 0.89596 0.87284 0.92628 0.93204 0.79509 0.93896 0.87705 0.86061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.61 10.82 113.37 1.23 1.83 16 2 O -0.40 -8.76 9.58 -135.19 -1.30 -10.06 16 3 C 0.10 1.57 2.27 30.59 0.07 1.64 16 4 H 0.06 1.07 7.60 -2.39 -0.02 1.05 16 5 C -0.17 -1.92 9.53 71.98 0.69 -1.23 16 6 C -0.14 -2.16 3.81 29.85 0.11 -2.05 16 7 C 0.52 11.14 7.58 87.66 0.66 11.80 16 8 O -0.56 -15.49 14.85 10.74 0.16 -15.33 16 9 N -0.61 -12.25 2.92 -819.78 -2.39 -14.65 16 10 C 0.12 2.15 6.41 86.37 0.55 2.71 16 11 C -0.05 -0.99 6.44 30.04 0.19 -0.80 16 12 C -0.23 -5.99 6.43 24.95 0.16 -5.83 16 13 S 0.16 4.72 23.17 -56.49 -1.31 3.42 16 14 C 0.04 1.39 6.75 88.57 0.60 1.99 16 15 C 0.23 9.34 6.84 85.64 0.59 9.92 16 16 N -0.74 -37.82 5.59 -347.19 -1.94 -39.77 16 17 C -0.25 -13.59 9.99 84.03 0.84 -12.75 16 18 H 0.09 4.40 7.83 -2.91 -0.02 4.38 16 19 C -0.07 -4.17 5.50 84.86 0.47 -3.71 16 20 N -0.97 -59.25 13.06 21.65 0.28 -58.97 16 21 Si 0.98 45.53 29.55 68.60 2.03 47.56 16 22 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 23 H -0.29 -13.72 7.11 99.48 0.71 -13.02 16 24 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 25 N -0.48 -16.93 10.51 -176.94 -1.86 -18.79 16 26 C 0.03 0.77 6.87 42.16 0.29 1.06 16 27 C 0.20 4.01 6.65 86.05 0.57 4.58 16 28 H 0.04 0.65 8.08 -2.39 -0.02 0.63 16 29 H 0.05 0.67 7.87 -2.39 -0.02 0.65 16 30 H 0.09 1.29 8.14 -2.38 -0.02 1.27 16 31 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.06 0.67 7.87 -2.39 -0.02 0.65 16 33 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.14 1.22 8.09 -2.38 -0.02 1.20 16 35 H 0.11 1.62 7.57 -2.39 -0.02 1.60 16 36 H 0.10 1.96 7.01 -2.39 -0.02 1.94 16 37 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 39 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 40 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 41 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 42 H 0.37 20.85 7.66 -92.71 -0.71 20.14 16 43 H 0.25 14.87 8.31 -92.71 -0.77 14.10 16 44 H 0.11 1.90 8.14 -2.39 -0.02 1.88 16 45 H 0.12 2.02 6.15 -2.38 -0.01 2.00 16 Total: -1.00 -72.97 383.75 0.99 -71.98 By element: Atomic # 1 Polarization: 25.13 SS G_CDS: 0.30 Total: 25.43 kcal Atomic # 6 Polarization: 2.16 SS G_CDS: 7.02 Total: 9.18 kcal Atomic # 7 Polarization: -126.26 SS G_CDS: -5.91 Total: -132.17 kcal Atomic # 8 Polarization: -24.25 SS G_CDS: -1.14 Total: -25.39 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.56 kcal Atomic # 16 Polarization: 4.72 SS G_CDS: -1.31 Total: 3.42 kcal Total: -72.97 0.99 -71.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691801907.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.577 kcal (2) G-P(sol) polarization free energy of solvation -72.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds