Wall clock time and date at job start Sat Apr 11 2020 05:40:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.47272 * 2 1 4 4 C 1.53009 * 109.47034 * 240.00133 * 2 1 3 5 5 N 1.46496 * 109.46965 * 65.00093 * 4 2 1 6 6 C 1.36937 * 120.00236 * 179.97438 * 5 4 2 7 7 H 1.08002 * 119.99198 * 0.02562 * 6 5 4 8 8 C 1.38805 * 120.00525 * 179.97438 * 6 5 4 9 9 N 1.31624 * 119.99974 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 120.00305 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47104 * 359.97438 * 10 8 6 12 12 H 1.48501 * 109.47139 * 120.00027 * 10 8 6 13 13 H 1.48500 * 109.47053 * 239.99922 * 10 8 6 14 14 C 1.52997 * 109.47318 * 120.00531 * 2 1 3 15 15 N 1.46508 * 109.46928 * 294.99965 * 14 2 1 16 16 C 1.34773 * 120.00331 * 180.02562 * 15 14 2 17 17 O 1.21283 * 119.99862 * 359.97438 * 16 15 14 18 18 C 1.50696 * 120.00429 * 179.97438 * 16 15 14 19 19 H 1.08999 * 109.46984 * 300.00248 * 18 16 15 20 20 C 1.53008 * 109.46920 * 59.99960 * 18 16 15 21 21 N 1.46499 * 109.47278 * 179.97438 * 18 16 15 22 22 C 1.34777 * 119.99665 * 155.27952 * 21 18 16 23 23 O 1.21703 * 120.00193 * 359.72118 * 22 21 18 24 24 C 1.46586 * 119.99782 * 179.72446 * 22 21 18 25 25 C 1.36647 * 125.45923 * 179.97438 * 24 22 21 26 26 C 1.37473 * 113.29745 * 180.02562 * 25 24 22 27 27 C 1.33816 * 115.10124 * 0.02562 * 26 25 24 28 28 S 1.70620 * 110.95482 * 359.72085 * 27 26 25 29 29 H 1.08996 * 109.46875 * 59.99570 * 1 2 3 30 30 H 1.08998 * 109.46834 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46831 * 300.00322 * 1 2 3 32 32 H 1.08998 * 109.46942 * 185.00115 * 4 2 1 33 33 H 1.09001 * 109.46942 * 305.00185 * 4 2 1 34 34 H 0.97008 * 120.00391 * 0.02562 * 5 4 2 35 35 H 0.96998 * 120.00178 * 179.97438 * 9 8 6 36 36 H 1.08997 * 109.47437 * 175.00360 * 14 2 1 37 37 H 1.08999 * 109.47544 * 54.99689 * 14 2 1 38 38 H 0.96998 * 119.99550 * 359.97438 * 15 14 2 39 39 H 1.09000 * 109.47169 * 59.99791 * 20 18 16 40 40 H 1.08995 * 109.47066 * 180.02562 * 20 18 16 41 41 H 1.09005 * 109.46722 * 300.00150 * 20 18 16 42 42 H 0.97001 * 119.99790 * 334.99665 * 21 18 16 43 43 H 1.08000 * 123.34725 * 359.97438 * 25 24 22 44 44 H 1.07994 * 122.44962 * 180.02562 * 26 25 24 45 45 H 1.07996 * 124.52401 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 1.6524 0.0354 -2.4424 6 6 2.0019 -0.4201 -3.6856 7 1 2.5629 -1.3375 -3.7864 8 6 1.6343 0.2965 -4.8161 9 7 0.9493 1.4137 -4.6932 10 14 2.1104 -0.3253 -6.5120 11 1 2.8714 -1.5935 -6.3786 12 1 0.8836 -0.5655 -7.3136 13 1 2.9552 0.6891 -7.1919 14 6 2.0400 -0.7213 1.2491 15 7 1.6525 0.0352 2.4424 16 6 1.9965 -0.4132 3.6659 17 8 2.6265 -1.4433 3.7792 18 6 1.5983 0.3653 4.8932 19 1 2.0329 1.3638 4.8469 20 6 0.0734 0.4751 4.9551 21 7 2.0866 -0.3254 6.0894 22 6 2.3062 0.3668 7.2247 23 8 2.1039 1.5665 7.2548 24 6 2.7890 -0.3253 8.4233 25 6 3.0484 0.2639 9.6286 26 6 3.4920 -0.6212 10.5823 27 6 3.5936 -1.8916 10.1743 28 16 3.1215 -2.0479 8.5421 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 3.1263 -0.7995 -1.2057 33 1 1.6053 -1.7198 -1.2953 34 1 1.1489 0.8596 -2.3518 35 1 0.6926 1.9147 -5.4831 36 1 3.1263 -0.7995 1.2055 37 1 1.6054 -1.7199 1.2951 38 1 1.1489 0.8593 2.3517 39 1 -0.3612 -0.5234 5.0013 40 1 -0.2146 1.0386 5.8425 41 1 -0.2902 0.9888 4.0651 42 1 2.2478 -1.2816 6.0653 43 1 2.9187 1.3201 9.8132 44 1 3.7403 -0.3138 11.5873 45 1 3.9251 -2.7097 10.7965 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698761657.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:06 Heat of formation + Delta-G solvation = -61.034629 kcal Electronic energy + Delta-G solvation = -25845.524966 eV Core-core repulsion = 21988.721391 eV Total energy + Delta-G solvation = -3856.803575 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.58194 -40.43111 -38.52836 -38.21463 -36.18080 -35.98519 -34.23659 -32.56287 -31.68065 -30.30866 -27.79888 -27.19345 -26.33742 -25.16190 -24.09088 -22.42754 -21.63036 -21.21981 -20.43403 -19.85824 -19.15980 -18.03068 -17.67933 -17.11371 -16.79564 -16.57445 -16.51373 -16.17179 -15.82996 -15.64309 -15.44891 -15.00925 -14.72702 -14.67154 -14.20824 -14.03200 -13.77751 -13.70301 -13.56746 -13.44090 -13.39323 -13.18289 -12.94946 -12.82964 -12.70883 -12.18284 -12.12406 -11.98652 -11.93950 -11.70220 -11.65015 -11.34089 -11.04810 -10.94796 -10.45218 -10.16520 -9.87786 -9.56195 -8.98429 -7.95350 -5.23303 -0.52319 0.47340 0.92542 1.36594 1.43550 1.48224 1.48435 1.58570 1.63878 2.08960 2.27380 2.56920 3.38793 3.46156 3.71071 3.74007 3.95251 3.98512 4.05847 4.09095 4.14034 4.34550 4.35496 4.53583 4.54985 4.59038 4.71840 4.73609 4.78902 4.95606 5.01010 5.06567 5.13328 5.14686 5.15474 5.20577 5.28649 5.35482 5.40261 5.49782 5.51314 6.24351 6.27587 6.39366 6.92997 7.05103 7.34612 8.10316 8.33954 9.28209 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.033277 B = 0.001626 C = 0.001585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.213703 B =17211.176747 C =17662.614516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.095 4.095 3 H 0.078 0.922 4 C 0.156 3.844 5 N -0.741 5.741 6 C -0.246 4.246 7 H 0.074 0.926 8 C -0.074 4.074 9 N -0.967 5.967 10 Si 0.972 3.028 11 H -0.268 1.268 12 H -0.293 1.293 13 H -0.294 1.294 14 C 0.139 3.861 15 N -0.704 5.704 16 C 0.513 3.487 17 O -0.571 6.571 18 C 0.128 3.872 19 H 0.119 0.881 20 C -0.155 4.155 21 N -0.707 5.707 22 C 0.595 3.405 23 O -0.563 6.563 24 C -0.305 4.305 25 C -0.054 4.054 26 C -0.160 4.160 27 C -0.217 4.217 28 S 0.221 5.779 29 H 0.040 0.960 30 H 0.053 0.947 31 H 0.078 0.922 32 H 0.019 0.981 33 H 0.023 0.977 34 H 0.376 0.624 35 H 0.251 0.749 36 H 0.062 0.938 37 H 0.070 0.930 38 H 0.416 0.584 39 H 0.068 0.932 40 H 0.070 0.930 41 H 0.096 0.904 42 H 0.410 0.590 43 H 0.152 0.848 44 H 0.171 0.829 45 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.149 -5.645 33.787 34.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.115 4.115 3 H 0.096 0.904 4 C 0.029 3.971 5 N -0.385 5.385 6 C -0.378 4.378 7 H 0.092 0.908 8 C -0.266 4.266 9 N -0.618 5.618 10 Si 0.801 3.199 11 H -0.192 1.192 12 H -0.220 1.220 13 H -0.221 1.221 14 C 0.014 3.986 15 N -0.357 5.357 16 C 0.299 3.701 17 O -0.450 6.450 18 C 0.020 3.980 19 H 0.137 0.863 20 C -0.213 4.213 21 N -0.360 5.360 22 C 0.383 3.617 23 O -0.444 6.444 24 C -0.425 4.425 25 C -0.089 4.089 26 C -0.190 4.190 27 C -0.355 4.355 28 S 0.489 5.511 29 H 0.060 0.940 30 H 0.072 0.928 31 H 0.097 0.903 32 H 0.037 0.963 33 H 0.041 0.959 34 H 0.209 0.791 35 H 0.060 0.940 36 H 0.081 0.919 37 H 0.089 0.911 38 H 0.254 0.746 39 H 0.087 0.913 40 H 0.089 0.911 41 H 0.115 0.885 42 H 0.247 0.753 43 H 0.170 0.830 44 H 0.188 0.812 45 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges 1.441 -6.924 32.721 33.477 hybrid contribution 0.096 1.305 -0.305 1.343 sum 1.537 -5.619 32.416 32.936 Atomic orbital electron populations 1.21739 0.93740 1.02056 1.01842 1.21346 0.97282 1.00077 0.92745 0.90356 1.20736 0.96521 0.94194 0.85651 1.42513 1.66788 1.27819 1.01341 1.19673 1.27722 1.05299 0.85100 0.90810 1.25521 1.01717 0.97917 1.01445 1.69807 1.45073 1.17930 1.29005 0.85099 0.77081 0.77601 0.80128 1.19217 1.21987 1.22074 1.21189 0.99716 0.95162 0.82493 1.45808 1.56927 1.28155 1.04768 1.20709 0.78775 0.85322 0.85278 1.90698 1.41443 1.25950 1.86941 1.20858 0.97839 0.97054 0.82257 0.86318 1.22140 0.90766 1.03697 1.04722 1.45622 1.67622 1.12756 1.10005 1.17169 0.76315 0.86026 0.82201 1.90808 1.53961 1.15032 1.84610 1.24534 1.19088 0.99798 0.99101 1.21041 0.95314 1.02067 0.90435 1.20286 1.04390 0.91933 1.02366 1.25810 1.06289 1.02803 1.00578 1.83221 1.58854 1.01864 1.07189 0.94036 0.92792 0.90322 0.96306 0.95944 0.79084 0.94003 0.91942 0.91136 0.74594 0.91294 0.91122 0.88500 0.75258 0.83029 0.81207 0.78405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.58 8.94 71.98 0.64 -2.94 16 2 C -0.10 -2.66 2.46 -10.79 -0.03 -2.69 16 3 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 4 C 0.16 5.94 5.65 86.38 0.49 6.43 16 5 N -0.74 -36.64 5.33 -343.45 -1.83 -38.47 16 6 C -0.25 -13.65 9.99 84.03 0.84 -12.81 16 7 H 0.07 3.96 7.83 -2.91 -0.02 3.94 16 8 C -0.07 -4.20 5.50 84.86 0.47 -3.73 16 9 N -0.97 -58.41 13.06 21.65 0.28 -58.13 16 10 Si 0.97 45.93 29.55 68.60 2.03 47.96 16 11 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 12 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 13 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 14 C 0.14 3.31 5.07 86.38 0.44 3.75 16 15 N -0.70 -13.38 5.18 -463.06 -2.40 -15.78 16 16 C 0.51 11.03 7.22 87.66 0.63 11.67 16 17 O -0.57 -16.14 15.84 -3.04 -0.05 -16.19 16 18 C 0.13 2.31 2.98 44.25 0.13 2.44 16 19 H 0.12 2.17 7.58 -2.39 -0.02 2.16 16 20 C -0.15 -2.13 9.38 71.98 0.67 -1.45 16 21 N -0.71 -13.93 4.95 -450.15 -2.23 -16.16 16 22 C 0.59 13.18 7.74 86.42 0.67 13.85 16 23 O -0.56 -15.56 16.51 -4.36 -0.07 -15.63 16 24 C -0.31 -5.47 6.45 24.08 0.16 -5.32 16 25 C -0.05 -0.83 10.01 21.72 0.22 -0.61 16 26 C -0.16 -1.62 10.15 21.08 0.21 -1.40 16 27 C -0.22 -1.89 10.92 66.81 0.73 -1.16 16 28 S 0.22 2.72 22.16 -56.49 -1.25 1.47 16 29 H 0.04 1.35 7.18 -2.39 -0.02 1.33 16 30 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.08 1.48 7.18 -2.39 -0.02 1.47 16 32 H 0.02 0.73 8.14 -2.39 -0.02 0.72 16 33 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.38 19.53 6.85 -92.70 -0.64 18.90 16 35 H 0.25 14.68 8.31 -92.71 -0.77 13.91 16 36 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 37 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 38 H 0.42 5.83 7.07 -92.71 -0.66 5.17 16 39 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 40 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 41 H 0.10 0.93 7.57 -2.38 -0.02 0.91 16 42 H 0.41 7.73 6.90 -92.71 -0.64 7.09 16 43 H 0.15 2.28 8.06 -2.91 -0.02 2.26 16 44 H 0.17 0.84 8.06 -2.91 -0.02 0.82 16 45 H 0.20 0.53 8.06 -2.91 -0.02 0.50 16 Total: -1.00 -73.34 392.13 -0.14 -73.48 By element: Atomic # 1 Polarization: 32.33 SS G_CDS: -0.90 Total: 31.43 kcal Atomic # 6 Polarization: -0.25 SS G_CDS: 6.27 Total: 6.02 kcal Atomic # 7 Polarization: -122.37 SS G_CDS: -6.17 Total: -128.54 kcal Atomic # 8 Polarization: -31.70 SS G_CDS: -0.12 Total: -31.82 kcal Atomic # 14 Polarization: 45.93 SS G_CDS: 2.03 Total: 47.96 kcal Atomic # 16 Polarization: 2.72 SS G_CDS: -1.25 Total: 1.47 kcal Total: -73.34 -0.14 -73.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698761657.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.447 kcal (2) G-P(sol) polarization free energy of solvation -73.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds