Wall clock time and date at job start Sat Apr 11 2020 05:40:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.46995 * 2 1 4 4 C 1.53005 * 109.47573 * 239.99829 * 2 1 3 5 5 N 1.46506 * 109.46693 * 65.00054 * 4 2 1 6 6 C 1.36939 * 119.99743 * 180.02562 * 5 4 2 7 7 H 1.08002 * 119.99621 * 359.97438 * 6 5 4 8 8 C 1.38808 * 120.00118 * 180.02562 * 6 5 4 9 9 N 1.31620 * 119.99679 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 120.00088 * 180.02562 * 8 6 5 11 11 H 1.48492 * 109.47403 * 59.99587 * 10 8 6 12 12 H 1.48502 * 109.47114 * 180.02562 * 10 8 6 13 13 H 1.48499 * 109.46921 * 299.99530 * 10 8 6 14 14 C 1.53000 * 109.47246 * 119.99790 * 2 1 3 15 15 N 1.46500 * 109.47023 * 295.00396 * 14 2 1 16 16 C 1.34774 * 119.99881 * 179.97438 * 15 14 2 17 17 O 1.21282 * 120.00445 * 0.02562 * 16 15 14 18 18 C 1.50708 * 120.00011 * 179.97438 * 16 15 14 19 19 H 1.09002 * 109.46828 * 60.00113 * 18 16 15 20 20 C 1.52997 * 109.47141 * 300.00244 * 18 16 15 21 21 N 1.46500 * 109.47008 * 179.97438 * 18 16 15 22 22 C 1.34780 * 119.99910 * 205.00179 * 21 18 16 23 23 O 1.21708 * 119.99905 * 0.02562 * 22 21 18 24 24 C 1.46578 * 119.99845 * 180.02562 * 22 21 18 25 25 C 1.36653 * 125.45230 * 179.97438 * 24 22 21 26 26 C 1.37476 * 113.29269 * 179.97438 * 25 24 22 27 27 C 1.33817 * 115.10173 * 359.97438 * 26 25 24 28 28 S 1.70618 * 110.95489 * 359.76813 * 27 26 25 29 29 H 1.09004 * 109.47017 * 60.00120 * 1 2 3 30 30 H 1.09001 * 109.46995 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47388 * 300.00295 * 1 2 3 32 32 H 1.08998 * 109.47038 * 184.99859 * 4 2 1 33 33 H 1.08999 * 109.46917 * 305.00453 * 4 2 1 34 34 H 0.97000 * 120.00105 * 359.97438 * 5 4 2 35 35 H 0.96998 * 120.00060 * 180.02562 * 9 8 6 36 36 H 1.09002 * 109.47398 * 175.00325 * 14 2 1 37 37 H 1.09000 * 109.46968 * 55.00307 * 14 2 1 38 38 H 0.96998 * 119.99994 * 359.97438 * 15 14 2 39 39 H 1.09002 * 109.47153 * 299.99670 * 20 18 16 40 40 H 1.09001 * 109.46832 * 179.97438 * 20 18 16 41 41 H 1.09004 * 109.47261 * 59.99842 * 20 18 16 42 42 H 0.96994 * 119.99975 * 25.00556 * 21 18 16 43 43 H 1.07990 * 123.35662 * 359.94129 * 25 24 22 44 44 H 1.07995 * 122.45092 * 180.02562 * 26 25 24 45 45 H 1.08006 * 124.52158 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 1.6525 0.0354 -2.4424 6 6 2.0012 -0.4208 -3.6856 7 1 2.5623 -1.3381 -3.7864 8 6 1.6345 0.2963 -4.8161 9 7 0.9512 1.4145 -4.6931 10 14 2.1096 -0.3263 -6.5120 11 1 1.5152 -1.6694 -6.7307 12 1 1.6033 0.6137 -7.5441 13 1 3.5886 -0.4177 -6.6093 14 6 2.0400 -0.7212 1.2493 15 7 1.6523 0.0354 2.4424 16 6 1.9955 -0.4135 3.6659 17 8 2.6256 -1.4436 3.7794 18 6 1.5972 0.3651 4.8933 19 1 0.5109 0.4441 4.9368 20 6 2.2082 1.7663 4.8289 21 7 2.0844 -0.3262 6.0895 22 6 1.4658 -0.1426 7.2728 23 8 0.5022 0.5971 7.3475 24 6 1.9537 -0.8338 8.4698 25 6 1.4139 -0.7291 9.7209 26 6 2.0699 -1.4878 10.6611 27 6 3.1104 -2.1905 10.1983 28 16 3.3219 -1.9368 8.5244 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 3.1264 -0.7994 -1.2055 33 1 1.6054 -1.7198 -1.2951 34 1 1.1483 0.8591 -2.3518 35 1 0.6946 1.9155 -5.4831 36 1 3.1263 -0.7994 1.2057 37 1 1.6054 -1.7198 1.2952 38 1 1.1487 0.8594 2.3517 39 1 3.2945 1.6874 4.7854 40 1 1.9197 2.3296 5.7164 41 1 1.8453 2.2804 3.9388 42 1 2.8522 -0.9159 6.0300 43 1 0.5578 -0.1115 9.9484 44 1 1.7671 -1.5154 11.6974 45 1 3.7313 -2.8350 10.8030 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698761668.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:09 Heat of formation + Delta-G solvation = -36.889170 kcal Electronic energy + Delta-G solvation = -25838.291094 eV Core-core repulsion = 21982.534545 eV Total energy + Delta-G solvation = -3855.756549 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.71062 -39.55352 -37.91036 -36.95901 -35.27789 -34.51444 -32.73571 -31.56945 -30.11229 -29.62500 -26.70283 -25.81665 -25.44906 -24.15201 -22.52625 -21.61597 -20.64201 -20.19352 -19.61378 -19.17471 -17.46299 -16.96042 -16.75759 -16.15782 -16.03213 -15.67719 -15.40620 -15.12919 -14.52743 -14.46684 -14.07668 -13.88024 -13.71586 -13.44231 -13.22567 -13.08467 -13.00855 -12.82154 -12.62777 -12.56570 -12.35228 -12.11210 -11.95128 -11.41869 -11.09372 -10.93316 -10.74229 -10.61692 -10.50082 -10.47074 -10.18472 -10.01061 -9.71042 -9.60817 -9.31452 -9.18108 -9.05731 -8.89028 -6.94363 -5.78566 -3.07181 0.05230 1.01326 1.42539 1.94407 2.34415 2.44966 2.80759 3.13681 3.43563 3.47966 3.48917 4.26883 4.43306 4.54388 4.57592 4.67169 4.77081 4.84421 4.98088 5.01373 5.15909 5.20714 5.33436 5.38230 5.49246 5.55929 5.70284 5.74759 5.76848 5.84783 5.86923 5.91444 5.93029 6.05985 6.18751 6.32577 6.38395 6.62033 6.73494 6.82772 7.02190 7.27020 7.68395 7.72368 7.94099 8.40479 9.51758 10.08685 10.43430 11.44258 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.034682 B = 0.001626 C = 0.001580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.153053 B =17214.420256 C =17711.784317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.111 4.111 3 H 0.077 0.923 4 C 0.161 3.839 5 N -0.730 5.730 6 C -0.241 4.241 7 H 0.070 0.930 8 C -0.013 4.013 9 N -0.934 5.934 10 Si 0.908 3.092 11 H -0.286 1.286 12 H -0.291 1.291 13 H -0.286 1.286 14 C 0.126 3.874 15 N -0.716 5.716 16 C 0.509 3.491 17 O -0.539 6.539 18 C 0.126 3.874 19 H 0.118 0.882 20 C -0.161 4.161 21 N -0.709 5.709 22 C 0.596 3.404 23 O -0.529 6.529 24 C -0.270 4.270 25 C -0.053 4.053 26 C -0.152 4.152 27 C -0.230 4.230 28 S 0.212 5.788 29 H 0.070 0.930 30 H 0.053 0.947 31 H 0.042 0.958 32 H 0.021 0.979 33 H 0.022 0.978 34 H 0.384 0.616 35 H 0.256 0.744 36 H 0.071 0.929 37 H 0.070 0.930 38 H 0.403 0.597 39 H 0.066 0.934 40 H 0.075 0.925 41 H 0.076 0.924 42 H 0.408 0.592 43 H 0.155 0.845 44 H 0.146 0.854 45 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.167 -3.211 32.011 32.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.130 4.130 3 H 0.096 0.904 4 C 0.032 3.968 5 N -0.375 5.375 6 C -0.372 4.372 7 H 0.088 0.912 8 C -0.209 4.209 9 N -0.583 5.583 10 Si 0.739 3.261 11 H -0.213 1.213 12 H -0.217 1.217 13 H -0.213 1.213 14 C 0.003 3.997 15 N -0.367 5.367 16 C 0.294 3.706 17 O -0.416 6.416 18 C 0.017 3.983 19 H 0.136 0.864 20 C -0.219 4.219 21 N -0.362 5.362 22 C 0.383 3.617 23 O -0.407 6.407 24 C -0.390 4.390 25 C -0.087 4.087 26 C -0.183 4.183 27 C -0.368 4.368 28 S 0.479 5.521 29 H 0.089 0.911 30 H 0.072 0.928 31 H 0.061 0.939 32 H 0.039 0.961 33 H 0.040 0.960 34 H 0.218 0.782 35 H 0.065 0.935 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.239 0.761 39 H 0.085 0.915 40 H 0.094 0.906 41 H 0.095 0.905 42 H 0.245 0.755 43 H 0.172 0.828 44 H 0.164 0.836 45 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 4.048 -4.091 30.882 31.414 hybrid contribution -0.768 0.492 0.146 0.923 sum 3.281 -3.600 31.028 31.408 Atomic orbital electron populations 1.21803 0.94592 1.02009 1.01592 1.21562 0.96776 1.00545 0.94101 0.90419 1.20571 0.96600 0.94214 0.85368 1.42322 1.66946 1.27684 1.00545 1.19194 1.28873 1.05468 0.83676 0.91205 1.24732 1.00965 0.97372 0.97857 1.69644 1.43454 1.16540 1.28633 0.86252 0.78012 0.77713 0.84115 1.21265 1.21686 1.21273 1.21482 1.00292 0.95309 0.82654 1.45988 1.57182 1.27898 1.05646 1.20461 0.79768 0.85592 0.84820 1.90708 1.40128 1.24303 1.86478 1.20814 1.01901 0.92271 0.83290 0.86400 1.22158 1.01817 0.94061 1.03911 1.45594 1.34602 1.49027 1.07015 1.16893 0.82433 0.80731 0.81692 1.90843 1.26750 1.37823 1.85251 1.24569 1.05858 1.10110 0.98483 1.20822 0.99767 0.97982 0.90112 1.20069 0.97015 0.99556 1.01649 1.25406 1.04083 1.06767 1.00525 1.83276 1.26867 1.38407 1.03540 0.91054 0.92783 0.93868 0.96133 0.96006 0.78195 0.93468 0.91095 0.91128 0.76140 0.91519 0.90595 0.90467 0.75484 0.82779 0.83600 0.81260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.01 8.94 37.16 0.33 -1.68 16 2 C -0.11 -1.61 2.46 -90.62 -0.22 -1.83 16 3 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 4 C 0.16 3.09 5.65 -4.04 -0.02 3.07 16 5 N -0.73 -17.95 5.33 -59.90 -0.32 -18.27 16 6 C -0.24 -6.68 9.99 -15.06 -0.15 -6.83 16 7 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 8 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 9 N -0.93 -27.84 13.06 55.49 0.72 -27.12 16 10 Si 0.91 22.27 29.55 -169.99 -5.02 17.24 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 13 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 14 C 0.13 1.60 5.06 -4.04 -0.02 1.58 16 15 N -0.72 -7.47 5.18 -60.29 -0.31 -7.79 16 16 C 0.51 5.79 7.22 -10.98 -0.08 5.71 16 17 O -0.54 -7.83 15.84 5.56 0.09 -7.74 16 18 C 0.13 1.19 2.98 -69.08 -0.21 0.98 16 19 H 0.12 1.11 7.57 -51.93 -0.39 0.72 16 20 C -0.16 -1.25 9.38 37.16 0.35 -0.90 16 21 N -0.71 -7.07 4.95 -56.27 -0.28 -7.34 16 22 C 0.60 6.53 7.75 -12.90 -0.10 6.43 16 23 O -0.53 -7.13 16.50 5.18 0.09 -7.05 16 24 C -0.27 -2.45 6.45 -36.79 -0.24 -2.68 16 25 C -0.05 -0.42 10.01 -40.43 -0.40 -0.83 16 26 C -0.15 -0.92 10.15 -41.41 -0.42 -1.34 16 27 C -0.23 -1.28 10.92 29.18 0.32 -0.97 16 28 S 0.21 1.43 22.16 -107.50 -2.38 -0.95 16 29 H 0.07 1.20 7.18 -51.93 -0.37 0.82 16 30 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.04 0.48 7.18 -51.93 -0.37 0.11 16 32 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.38 9.82 6.85 -40.82 -0.28 9.54 16 35 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 36 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 37 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.40 3.35 7.07 -40.82 -0.29 3.06 16 39 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 40 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.08 0.48 7.57 -51.93 -0.39 0.09 16 42 H 0.41 3.90 6.90 -40.82 -0.28 3.62 16 43 H 0.15 1.14 8.06 -52.49 -0.42 0.72 16 44 H 0.15 0.56 8.06 -52.49 -0.42 0.14 16 45 H 0.17 0.53 8.06 -52.48 -0.42 0.11 16 LS Contribution 392.13 15.07 5.91 5.91 Total: -1.00 -33.77 392.13 -9.05 -42.81 By element: Atomic # 1 Polarization: 16.64 SS G_CDS: -6.58 Total: 10.06 kcal Atomic # 6 Polarization: 1.19 SS G_CDS: -0.96 Total: 0.23 kcal Atomic # 7 Polarization: -60.33 SS G_CDS: -0.19 Total: -60.52 kcal Atomic # 8 Polarization: -14.96 SS G_CDS: 0.17 Total: -14.79 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.24 kcal Atomic # 16 Polarization: 1.43 SS G_CDS: -2.38 Total: -0.95 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -33.77 -9.05 -42.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698761668.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.925 kcal (2) G-P(sol) polarization free energy of solvation -33.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds