Wall clock time and date at job start Sat Apr 11 2020 05:40:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.46995 * 2 1 4 4 C 1.53005 * 109.47573 * 239.99829 * 2 1 3 5 5 N 1.46506 * 109.46693 * 65.00054 * 4 2 1 6 6 C 1.36939 * 119.99743 * 180.02562 * 5 4 2 7 7 H 1.08002 * 119.99621 * 359.97438 * 6 5 4 8 8 C 1.38808 * 120.00118 * 180.02562 * 6 5 4 9 9 N 1.31620 * 119.99679 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 120.00088 * 180.02562 * 8 6 5 11 11 H 1.48492 * 109.47403 * 59.99587 * 10 8 6 12 12 H 1.48502 * 109.47114 * 180.02562 * 10 8 6 13 13 H 1.48499 * 109.46921 * 299.99530 * 10 8 6 14 14 C 1.53000 * 109.47246 * 119.99790 * 2 1 3 15 15 N 1.46500 * 109.47023 * 295.00396 * 14 2 1 16 16 C 1.34774 * 119.99881 * 179.97438 * 15 14 2 17 17 O 1.21282 * 120.00445 * 0.02562 * 16 15 14 18 18 C 1.50708 * 120.00011 * 179.97438 * 16 15 14 19 19 H 1.09002 * 109.46828 * 60.00113 * 18 16 15 20 20 C 1.52997 * 109.47141 * 300.00244 * 18 16 15 21 21 N 1.46500 * 109.47008 * 179.97438 * 18 16 15 22 22 C 1.34780 * 119.99910 * 205.00179 * 21 18 16 23 23 O 1.21708 * 119.99905 * 0.02562 * 22 21 18 24 24 C 1.46578 * 119.99845 * 180.02562 * 22 21 18 25 25 C 1.36653 * 125.45230 * 179.97438 * 24 22 21 26 26 C 1.37476 * 113.29269 * 179.97438 * 25 24 22 27 27 C 1.33817 * 115.10173 * 359.97438 * 26 25 24 28 28 S 1.70618 * 110.95489 * 359.76813 * 27 26 25 29 29 H 1.09004 * 109.47017 * 60.00120 * 1 2 3 30 30 H 1.09001 * 109.46995 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47388 * 300.00295 * 1 2 3 32 32 H 1.08998 * 109.47038 * 184.99859 * 4 2 1 33 33 H 1.08999 * 109.46917 * 305.00453 * 4 2 1 34 34 H 0.97000 * 120.00105 * 359.97438 * 5 4 2 35 35 H 0.96998 * 120.00060 * 180.02562 * 9 8 6 36 36 H 1.09002 * 109.47398 * 175.00325 * 14 2 1 37 37 H 1.09000 * 109.46968 * 55.00307 * 14 2 1 38 38 H 0.96998 * 119.99994 * 359.97438 * 15 14 2 39 39 H 1.09002 * 109.47153 * 299.99670 * 20 18 16 40 40 H 1.09001 * 109.46832 * 179.97438 * 20 18 16 41 41 H 1.09004 * 109.47261 * 59.99842 * 20 18 16 42 42 H 0.96994 * 119.99975 * 25.00556 * 21 18 16 43 43 H 1.07990 * 123.35662 * 359.94129 * 25 24 22 44 44 H 1.07995 * 122.45092 * 180.02562 * 26 25 24 45 45 H 1.08006 * 124.52158 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 1.6525 0.0354 -2.4424 6 6 2.0012 -0.4208 -3.6856 7 1 2.5623 -1.3381 -3.7864 8 6 1.6345 0.2963 -4.8161 9 7 0.9512 1.4145 -4.6931 10 14 2.1096 -0.3263 -6.5120 11 1 1.5152 -1.6694 -6.7307 12 1 1.6033 0.6137 -7.5441 13 1 3.5886 -0.4177 -6.6093 14 6 2.0400 -0.7212 1.2493 15 7 1.6523 0.0354 2.4424 16 6 1.9955 -0.4135 3.6659 17 8 2.6256 -1.4436 3.7794 18 6 1.5972 0.3651 4.8933 19 1 0.5109 0.4441 4.9368 20 6 2.2082 1.7663 4.8289 21 7 2.0844 -0.3262 6.0895 22 6 1.4658 -0.1426 7.2728 23 8 0.5022 0.5971 7.3475 24 6 1.9537 -0.8338 8.4698 25 6 1.4139 -0.7291 9.7209 26 6 2.0699 -1.4878 10.6611 27 6 3.1104 -2.1905 10.1983 28 16 3.3219 -1.9368 8.5244 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 3.1264 -0.7994 -1.2055 33 1 1.6054 -1.7198 -1.2951 34 1 1.1483 0.8591 -2.3518 35 1 0.6946 1.9155 -5.4831 36 1 3.1263 -0.7994 1.2057 37 1 1.6054 -1.7198 1.2952 38 1 1.1487 0.8594 2.3517 39 1 3.2945 1.6874 4.7854 40 1 1.9197 2.3296 5.7164 41 1 1.8453 2.2804 3.9388 42 1 2.8522 -0.9159 6.0300 43 1 0.5578 -0.1115 9.9484 44 1 1.7671 -1.5154 11.6974 45 1 3.7313 -2.8350 10.8030 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698761668.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:09 Heat of formation + Delta-G solvation = -60.779885 kcal Electronic energy + Delta-G solvation = -25839.327073 eV Core-core repulsion = 21982.534545 eV Total energy + Delta-G solvation = -3856.792528 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.58120 -40.43016 -38.52818 -38.21418 -36.17891 -35.98136 -34.23676 -32.56471 -31.67560 -30.30666 -27.82367 -27.18367 -26.33483 -25.15295 -24.08892 -22.42746 -21.61546 -21.24308 -20.43342 -19.85483 -19.15310 -18.03490 -17.68080 -16.99304 -16.88071 -16.60593 -16.49113 -16.24072 -15.82997 -15.55830 -15.42477 -15.07318 -14.74381 -14.57782 -14.33667 -13.97406 -13.72062 -13.69662 -13.57945 -13.49231 -13.39641 -13.18676 -12.95405 -12.77090 -12.70271 -12.21334 -12.17545 -11.98706 -11.93783 -11.71081 -11.64730 -11.34042 -11.04928 -10.92265 -10.45236 -10.16523 -9.87781 -9.56274 -8.97951 -7.94443 -5.22499 -0.52290 0.47370 0.92621 1.36639 1.43410 1.48491 1.50980 1.57070 1.63998 2.08905 2.27424 2.57640 3.39290 3.46172 3.70999 3.74013 3.95188 3.98223 4.04799 4.09246 4.14036 4.34587 4.35636 4.53631 4.55671 4.57701 4.71722 4.73013 4.78455 4.94831 5.01006 5.05147 5.13419 5.14676 5.14786 5.20554 5.28704 5.35548 5.39550 5.48629 5.51067 6.24287 6.28021 6.39364 6.92920 7.05090 7.35192 8.10958 8.34769 9.28621 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.034682 B = 0.001626 C = 0.001580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.153053 B =17214.420256 C =17711.784317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.094 4.094 3 H 0.082 0.918 4 C 0.156 3.844 5 N -0.741 5.741 6 C -0.249 4.249 7 H 0.074 0.926 8 C -0.073 4.073 9 N -0.967 5.967 10 Si 0.972 3.028 11 H -0.279 1.279 12 H -0.295 1.295 13 H -0.279 1.279 14 C 0.139 3.861 15 N -0.704 5.704 16 C 0.513 3.487 17 O -0.571 6.571 18 C 0.129 3.871 19 H 0.121 0.879 20 C -0.155 4.155 21 N -0.707 5.707 22 C 0.595 3.405 23 O -0.563 6.563 24 C -0.305 4.305 25 C -0.054 4.054 26 C -0.160 4.160 27 C -0.217 4.217 28 S 0.221 5.779 29 H 0.042 0.958 30 H 0.050 0.950 31 H 0.076 0.924 32 H 0.021 0.979 33 H 0.020 0.980 34 H 0.376 0.624 35 H 0.251 0.749 36 H 0.067 0.933 37 H 0.066 0.934 38 H 0.416 0.584 39 H 0.067 0.933 40 H 0.070 0.930 41 H 0.096 0.904 42 H 0.410 0.590 43 H 0.152 0.848 44 H 0.171 0.829 45 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.921 -3.897 33.541 33.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.113 4.113 3 H 0.100 0.900 4 C 0.029 3.971 5 N -0.384 5.384 6 C -0.381 4.381 7 H 0.091 0.909 8 C -0.265 4.265 9 N -0.617 5.617 10 Si 0.801 3.199 11 H -0.205 1.205 12 H -0.221 1.221 13 H -0.205 1.205 14 C 0.014 3.986 15 N -0.357 5.357 16 C 0.299 3.701 17 O -0.450 6.450 18 C 0.020 3.980 19 H 0.138 0.862 20 C -0.214 4.214 21 N -0.360 5.360 22 C 0.383 3.617 23 O -0.444 6.444 24 C -0.425 4.425 25 C -0.088 4.088 26 C -0.190 4.190 27 C -0.355 4.355 28 S 0.488 5.512 29 H 0.061 0.939 30 H 0.069 0.931 31 H 0.095 0.905 32 H 0.039 0.961 33 H 0.038 0.962 34 H 0.209 0.791 35 H 0.060 0.940 36 H 0.085 0.915 37 H 0.084 0.916 38 H 0.254 0.746 39 H 0.086 0.914 40 H 0.089 0.911 41 H 0.114 0.886 42 H 0.247 0.753 43 H 0.170 0.830 44 H 0.188 0.812 45 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges 4.821 -4.793 32.429 33.134 hybrid contribution -0.961 0.630 -0.227 1.171 sum 3.860 -4.163 32.202 32.699 Atomic orbital electron populations 1.21746 0.94064 1.01903 1.01790 1.21340 0.97002 1.00253 0.92753 0.90006 1.20733 0.96610 0.94097 0.85645 1.42494 1.66807 1.27830 1.01308 1.19601 1.28002 1.05340 0.85134 0.90853 1.25522 1.01679 0.97873 1.01448 1.69793 1.44999 1.17795 1.29155 0.85234 0.77886 0.77139 0.79630 1.20547 1.22084 1.20478 1.21190 0.99913 0.94975 0.82496 1.45806 1.56969 1.28112 1.04769 1.20715 0.78990 0.85116 0.85277 1.90697 1.41647 1.25767 1.86920 1.20854 1.02129 0.92750 0.82225 0.86179 1.22139 1.01786 0.92839 1.04610 1.45625 1.34457 1.48923 1.07008 1.17166 0.81921 0.80311 0.82297 1.90809 1.28252 1.39493 1.85835 1.24533 1.07812 1.11983 0.98195 1.21042 0.99671 0.97856 0.90265 1.20289 0.96978 0.99227 1.02478 1.25812 1.03706 1.06037 0.99930 1.83232 1.25667 1.37559 1.04720 0.93923 0.93052 0.90538 0.96081 0.96183 0.79080 0.93999 0.91465 0.91607 0.74589 0.91421 0.91071 0.88567 0.75274 0.83007 0.81199 0.78411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.73 8.94 71.98 0.64 -3.09 16 2 C -0.09 -2.64 2.46 -10.79 -0.03 -2.66 16 3 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 4 C 0.16 5.94 5.65 86.38 0.49 6.43 16 5 N -0.74 -36.59 5.33 -343.44 -1.83 -38.42 16 6 C -0.25 -13.80 9.99 84.03 0.84 -12.96 16 7 H 0.07 3.92 7.83 -2.91 -0.02 3.90 16 8 C -0.07 -4.14 5.50 84.86 0.47 -3.67 16 9 N -0.97 -58.27 13.06 21.65 0.28 -57.98 16 10 Si 0.97 45.82 29.55 68.60 2.03 47.84 16 11 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 12 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 13 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 14 C 0.14 3.31 5.06 86.38 0.44 3.75 16 15 N -0.70 -13.40 5.18 -463.05 -2.40 -15.80 16 16 C 0.51 11.04 7.22 87.66 0.63 11.68 16 17 O -0.57 -16.15 15.84 -3.04 -0.05 -16.20 16 18 C 0.13 2.32 2.98 44.25 0.13 2.46 16 19 H 0.12 2.16 7.57 -2.39 -0.02 2.15 16 20 C -0.16 -2.20 9.38 71.98 0.68 -1.53 16 21 N -0.71 -13.94 4.95 -450.15 -2.23 -16.17 16 22 C 0.59 13.14 7.75 86.42 0.67 13.81 16 23 O -0.56 -15.47 16.50 -4.38 -0.07 -15.54 16 24 C -0.31 -5.46 6.45 24.08 0.16 -5.30 16 25 C -0.05 -0.82 10.01 21.72 0.22 -0.60 16 26 C -0.16 -1.61 10.15 21.08 0.21 -1.40 16 27 C -0.22 -1.89 10.92 66.81 0.73 -1.16 16 28 S 0.22 2.73 22.16 -56.49 -1.25 1.47 16 29 H 0.04 1.41 7.18 -2.38 -0.02 1.40 16 30 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.08 1.54 7.18 -2.39 -0.02 1.53 16 32 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.38 19.50 6.85 -92.71 -0.63 18.87 16 35 H 0.25 14.73 8.31 -92.71 -0.77 13.96 16 36 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 37 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 38 H 0.42 5.84 7.07 -92.71 -0.66 5.19 16 39 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 40 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 41 H 0.10 0.98 7.57 -2.38 -0.02 0.96 16 42 H 0.41 7.76 6.90 -92.71 -0.64 7.12 16 43 H 0.15 2.27 8.06 -2.92 -0.02 2.24 16 44 H 0.17 0.83 8.06 -2.91 -0.02 0.81 16 45 H 0.20 0.53 8.06 -2.91 -0.02 0.51 16 Total: -1.00 -72.96 392.13 -0.14 -73.10 By element: Atomic # 1 Polarization: 32.86 SS G_CDS: -0.90 Total: 31.96 kcal Atomic # 6 Polarization: -0.53 SS G_CDS: 6.28 Total: 5.75 kcal Atomic # 7 Polarization: -122.21 SS G_CDS: -6.17 Total: -128.38 kcal Atomic # 8 Polarization: -31.63 SS G_CDS: -0.12 Total: -31.75 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 2.03 Total: 47.84 kcal Atomic # 16 Polarization: 2.73 SS G_CDS: -1.25 Total: 1.47 kcal Total: -72.96 -0.14 -73.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698761668.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.322 kcal (2) G-P(sol) polarization free energy of solvation -72.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds