Wall clock time and date at job start Sat Apr 11 2020 05:40:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08999 * 109.46998 * 2 1 4 4 C 1.52996 * 109.46909 * 120.00202 * 2 1 3 5 5 N 1.46498 * 109.47059 * 294.99709 * 4 2 1 6 6 C 1.36943 * 119.99752 * 179.72430 * 5 4 2 7 7 H 1.08002 * 119.99793 * 0.27665 * 6 5 4 8 8 C 1.38811 * 120.00012 * 180.27737 * 6 5 4 9 9 N 1.31624 * 119.99698 * 0.02562 * 8 6 5 10 10 Si 1.86795 * 120.00072 * 180.02562 * 8 6 5 11 11 H 1.48495 * 109.47159 * 0.02562 * 10 8 6 12 12 H 1.48505 * 109.47290 * 120.00044 * 10 8 6 13 13 H 1.48503 * 109.47163 * 240.00049 * 10 8 6 14 14 C 1.53004 * 109.46816 * 240.00146 * 2 1 3 15 15 N 1.46500 * 109.47129 * 65.00299 * 14 2 1 16 16 C 1.34771 * 120.00026 * 179.97438 * 15 14 2 17 17 O 1.21282 * 119.99801 * 359.97438 * 16 15 14 18 18 C 1.50700 * 120.00222 * 179.97438 * 16 15 14 19 19 H 1.09004 * 109.47034 * 60.00271 * 18 16 15 20 20 C 1.52998 * 109.47193 * 300.00317 * 18 16 15 21 21 N 1.46502 * 109.47155 * 180.02562 * 18 16 15 22 22 C 1.34778 * 119.99859 * 204.99872 * 21 18 16 23 23 O 1.21704 * 120.00036 * 0.02562 * 22 21 18 24 24 C 1.46583 * 119.99881 * 179.97438 * 22 21 18 25 25 C 1.36645 * 125.45914 * 180.02562 * 24 22 21 26 26 C 1.37466 * 113.30150 * 179.97438 * 25 24 22 27 27 C 1.33823 * 115.09816 * 0.02562 * 26 25 24 28 28 S 1.70617 * 110.95199 * 359.75881 * 27 26 25 29 29 H 1.09001 * 109.46930 * 59.99747 * 1 2 3 30 30 H 1.09000 * 109.46973 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47053 * 300.00107 * 1 2 3 32 32 H 1.09004 * 109.47066 * 174.99977 * 4 2 1 33 33 H 1.08994 * 109.46974 * 55.00124 * 4 2 1 34 34 H 0.97001 * 120.00384 * 0.02562 * 5 4 2 35 35 H 0.96999 * 119.99739 * 180.02562 * 9 8 6 36 36 H 1.09005 * 109.46502 * 184.99774 * 14 2 1 37 37 H 1.08996 * 109.47343 * 304.99842 * 14 2 1 38 38 H 0.97004 * 120.00029 * 359.97438 * 15 14 2 39 39 H 1.08997 * 109.47421 * 180.02562 * 20 18 16 40 40 H 1.09004 * 109.47093 * 299.99918 * 20 18 16 41 41 H 1.08996 * 109.47638 * 59.99743 * 20 18 16 42 42 H 0.96998 * 120.00061 * 25.00009 * 21 18 16 43 43 H 1.08002 * 123.35034 * 359.94462 * 25 24 22 44 44 H 1.08000 * 122.45581 * 180.02562 * 26 25 24 45 45 H 1.08002 * 124.52016 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6525 0.0353 2.4423 6 6 1.9967 -0.4236 3.6858 7 1 2.5577 -1.3410 3.7866 8 6 1.6245 0.2903 4.8166 9 7 0.9404 1.4080 4.6937 10 14 2.0946 -0.3353 6.5128 11 1 2.8565 -1.6029 6.3792 12 1 2.9366 0.6778 7.1983 13 1 0.8649 -0.5779 7.3093 14 6 2.0400 -0.7213 -1.2493 15 7 1.6525 0.0354 -2.4424 16 6 1.9964 -0.4129 -3.6659 17 8 2.6272 -1.4426 -3.7792 18 6 1.5973 0.3651 -4.8933 19 1 2.0313 1.3640 -4.8473 20 6 0.0724 0.4739 -4.9547 21 7 2.0857 -0.3255 -6.0895 22 6 2.3099 0.3677 -7.2234 23 8 2.1070 1.5673 -7.2535 24 6 2.7991 -0.3232 -8.4201 25 6 3.0634 0.2671 -9.6238 26 6 3.5125 -0.6169 -10.5760 27 6 3.6126 -1.8876 -10.1685 28 16 3.1457 -2.0431 -8.5349 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 3.1264 -0.7995 1.2056 33 1 1.6054 -1.7198 1.2950 34 1 1.1483 0.8591 2.3518 35 1 0.6807 1.9070 5.4838 36 1 3.1264 -0.7994 -1.2056 37 1 1.6054 -1.7198 -1.2953 38 1 1.1483 0.8592 -2.3518 39 1 -0.2163 1.0362 -5.8426 40 1 -0.3616 -0.5250 -5.0006 41 1 -0.2914 0.9874 -4.0647 42 1 2.2477 -1.2815 -6.0654 43 1 2.9321 1.3230 -9.8089 44 1 3.7659 -0.3085 -11.5795 45 1 3.9486 -2.7048 -10.7896 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698761670.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:11 Heat of formation + Delta-G solvation = -61.047356 kcal Electronic energy + Delta-G solvation = -25846.139471 eV Core-core repulsion = 21989.335344 eV Total energy + Delta-G solvation = -3856.804127 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.58212 -40.43133 -38.52853 -38.21479 -36.18077 -35.98514 -34.23651 -32.56343 -31.68053 -30.30859 -27.79908 -27.19327 -26.33679 -25.16172 -24.09081 -22.42818 -21.63057 -21.22000 -20.43410 -19.85854 -19.15959 -18.03131 -17.67937 -17.11420 -16.79534 -16.57432 -16.51316 -16.17292 -15.82932 -15.64446 -15.44885 -15.00860 -14.72615 -14.67209 -14.20828 -14.03209 -13.77772 -13.70287 -13.56674 -13.44075 -13.39498 -13.18123 -12.94991 -12.82926 -12.70793 -12.18231 -12.12439 -11.98742 -11.93913 -11.70220 -11.65017 -11.34104 -11.04892 -10.94756 -10.45221 -10.16533 -9.87788 -9.56239 -8.98416 -7.95380 -5.23302 -0.52338 0.47330 0.92561 1.36560 1.43515 1.48219 1.48444 1.58576 1.63943 2.09018 2.27322 2.56926 3.38773 3.46142 3.71047 3.73983 3.95315 3.98536 4.05819 4.09101 4.14032 4.34529 4.35485 4.53556 4.55008 4.59128 4.71835 4.73565 4.78888 4.95568 5.00988 5.06541 5.13349 5.14698 5.15579 5.20585 5.28644 5.35466 5.40241 5.49733 5.51308 6.24326 6.27587 6.39339 6.92975 7.05089 7.34607 8.10311 8.33973 9.28186 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.033223 B = 0.001627 C = 0.001585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.590128 B =17204.339202 C =17658.474795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.095 4.095 3 H 0.078 0.922 4 C 0.156 3.844 5 N -0.741 5.741 6 C -0.246 4.246 7 H 0.074 0.926 8 C -0.074 4.074 9 N -0.967 5.967 10 Si 0.972 3.028 11 H -0.268 1.268 12 H -0.294 1.294 13 H -0.293 1.293 14 C 0.139 3.861 15 N -0.704 5.704 16 C 0.513 3.487 17 O -0.571 6.571 18 C 0.128 3.872 19 H 0.119 0.881 20 C -0.155 4.155 21 N -0.707 5.707 22 C 0.595 3.405 23 O -0.563 6.563 24 C -0.305 4.305 25 C -0.054 4.054 26 C -0.160 4.160 27 C -0.217 4.217 28 S 0.222 5.778 29 H 0.078 0.922 30 H 0.053 0.947 31 H 0.040 0.960 32 H 0.019 0.981 33 H 0.022 0.978 34 H 0.376 0.624 35 H 0.251 0.749 36 H 0.062 0.938 37 H 0.070 0.930 38 H 0.416 0.584 39 H 0.070 0.930 40 H 0.068 0.932 41 H 0.096 0.904 42 H 0.410 0.590 43 H 0.152 0.848 44 H 0.171 0.829 45 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.218 -5.624 -33.773 34.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.115 4.115 3 H 0.097 0.903 4 C 0.029 3.971 5 N -0.385 5.385 6 C -0.378 4.378 7 H 0.092 0.908 8 C -0.266 4.266 9 N -0.618 5.618 10 Si 0.801 3.199 11 H -0.192 1.192 12 H -0.221 1.221 13 H -0.220 1.220 14 C 0.014 3.986 15 N -0.357 5.357 16 C 0.299 3.701 17 O -0.450 6.450 18 C 0.020 3.980 19 H 0.137 0.863 20 C -0.213 4.213 21 N -0.360 5.360 22 C 0.383 3.617 23 O -0.444 6.444 24 C -0.425 4.425 25 C -0.089 4.089 26 C -0.190 4.190 27 C -0.355 4.355 28 S 0.489 5.511 29 H 0.097 0.903 30 H 0.072 0.928 31 H 0.060 0.940 32 H 0.037 0.963 33 H 0.040 0.960 34 H 0.209 0.791 35 H 0.060 0.940 36 H 0.081 0.919 37 H 0.089 0.911 38 H 0.254 0.746 39 H 0.089 0.911 40 H 0.087 0.913 41 H 0.115 0.885 42 H 0.247 0.753 43 H 0.170 0.830 44 H 0.188 0.812 45 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges 1.524 -6.899 -32.705 33.459 hybrid contribution 0.077 1.297 0.303 1.334 sum 1.601 -5.602 -32.402 32.922 Atomic orbital electron populations 1.21741 0.93747 1.02052 1.01841 1.21346 0.97275 1.00084 0.92746 0.90348 1.20734 0.96533 0.94183 0.85652 1.42513 1.66894 1.27734 1.01320 1.19676 1.27729 1.05321 0.85072 0.90808 1.25524 1.01704 0.97931 1.01446 1.69809 1.45045 1.17970 1.28987 0.85098 0.77077 0.77603 0.80124 1.19217 1.22077 1.21985 1.21189 0.99720 0.95156 0.82496 1.45807 1.56906 1.28175 1.04769 1.20712 0.78785 0.85313 0.85281 1.90697 1.41422 1.25972 1.86941 1.20859 0.97841 0.97059 0.82249 0.86317 1.22135 0.90759 1.03705 1.04714 1.45623 1.67558 1.12735 1.10086 1.17169 0.76337 0.86015 0.82192 1.90808 1.54045 1.15036 1.84523 1.24532 1.18953 0.99871 0.99176 1.21039 0.95278 1.02052 0.90490 1.20287 1.04385 0.91910 1.02396 1.25813 1.06341 1.02796 1.00535 1.83221 1.58765 1.02094 1.07033 0.90325 0.92797 0.94036 0.96292 0.95959 0.79084 0.94004 0.91937 0.91141 0.74591 0.91121 0.91302 0.88498 0.75259 0.83030 0.81205 0.78402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.58 8.94 71.98 0.64 -2.94 16 2 C -0.10 -2.66 2.46 -10.79 -0.03 -2.69 16 3 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 4 C 0.16 5.94 5.65 86.38 0.49 6.43 16 5 N -0.74 -36.64 5.33 -343.46 -1.83 -38.47 16 6 C -0.25 -13.65 9.99 84.03 0.84 -12.81 16 7 H 0.07 3.97 7.83 -2.91 -0.02 3.94 16 8 C -0.07 -4.20 5.50 84.86 0.47 -3.73 16 9 N -0.97 -58.41 13.06 21.65 0.28 -58.13 16 10 Si 0.97 45.93 29.55 68.60 2.03 47.96 16 11 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 12 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 13 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 14 C 0.14 3.31 5.06 86.38 0.44 3.75 16 15 N -0.70 -13.38 5.18 -463.06 -2.40 -15.78 16 16 C 0.51 11.03 7.22 87.66 0.63 11.66 16 17 O -0.57 -16.14 15.84 -3.04 -0.05 -16.19 16 18 C 0.13 2.31 2.99 44.24 0.13 2.44 16 19 H 0.12 2.18 7.58 -2.38 -0.02 2.16 16 20 C -0.15 -2.13 9.38 71.98 0.68 -1.45 16 21 N -0.71 -13.93 4.95 -450.15 -2.23 -16.16 16 22 C 0.59 13.18 7.75 86.42 0.67 13.85 16 23 O -0.56 -15.56 16.50 -4.36 -0.07 -15.64 16 24 C -0.31 -5.47 6.45 24.08 0.16 -5.32 16 25 C -0.05 -0.83 10.01 21.71 0.22 -0.61 16 26 C -0.16 -1.62 10.15 21.08 0.21 -1.40 16 27 C -0.22 -1.89 10.92 66.82 0.73 -1.16 16 28 S 0.22 2.73 22.16 -56.49 -1.25 1.48 16 29 H 0.08 1.48 7.18 -2.39 -0.02 1.47 16 30 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.04 1.35 7.18 -2.39 -0.02 1.34 16 32 H 0.02 0.74 8.14 -2.38 -0.02 0.72 16 33 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.38 19.53 6.85 -92.71 -0.63 18.90 16 35 H 0.25 14.68 8.31 -92.71 -0.77 13.91 16 36 H 0.06 1.63 8.14 -2.38 -0.02 1.61 16 37 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 38 H 0.42 5.83 7.07 -92.71 -0.66 5.17 16 39 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 40 H 0.07 0.93 8.14 -2.38 -0.02 0.91 16 41 H 0.10 0.93 7.56 -2.39 -0.02 0.91 16 42 H 0.41 7.73 6.90 -92.71 -0.64 7.09 16 43 H 0.15 2.28 8.06 -2.91 -0.02 2.26 16 44 H 0.17 0.84 8.06 -2.91 -0.02 0.82 16 45 H 0.20 0.53 8.06 -2.91 -0.02 0.51 16 Total: -1.00 -73.34 392.13 -0.14 -73.48 By element: Atomic # 1 Polarization: 32.34 SS G_CDS: -0.90 Total: 31.44 kcal Atomic # 6 Polarization: -0.26 SS G_CDS: 6.27 Total: 6.01 kcal Atomic # 7 Polarization: -122.36 SS G_CDS: -6.17 Total: -128.53 kcal Atomic # 8 Polarization: -31.70 SS G_CDS: -0.12 Total: -31.82 kcal Atomic # 14 Polarization: 45.93 SS G_CDS: 2.03 Total: 47.96 kcal Atomic # 16 Polarization: 2.73 SS G_CDS: -1.25 Total: 1.48 kcal Total: -73.34 -0.14 -73.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698761670.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.431 kcal (2) G-P(sol) polarization free energy of solvation -73.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds