Wall clock time and date at job start Sat Apr 11 2020 05:40:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47262 * 2 1 4 4 N 1.46502 * 109.46920 * 119.99775 * 2 1 3 5 5 C 1.34776 * 119.99664 * 275.00160 * 4 2 1 6 6 O 1.21698 * 120.00547 * 359.97438 * 5 4 2 7 7 C 1.46583 * 119.99593 * 179.97438 * 5 4 2 8 8 C 1.36652 * 125.45644 * 179.97438 * 7 5 4 9 9 C 1.37468 * 113.29737 * 180.02562 * 8 7 5 10 10 C 1.33822 * 115.10479 * 359.97438 * 9 8 7 11 11 S 1.70622 * 110.94874 * 359.72938 * 10 9 8 12 12 C 1.50700 * 109.47182 * 239.99728 * 2 1 3 13 13 O 1.21282 * 119.99977 * 240.00076 * 12 2 1 14 14 N 1.34771 * 120.00222 * 60.00215 * 12 2 1 15 15 C 1.46500 * 120.00026 * 179.97438 * 14 12 2 16 16 C 1.53004 * 109.47129 * 179.97438 * 15 14 12 17 17 H 1.08999 * 109.47217 * 305.00580 * 16 15 14 18 18 C 1.53008 * 109.46816 * 65.00299 * 16 15 14 19 19 C 1.52996 * 109.47336 * 184.99981 * 16 15 14 20 20 N 1.46498 * 109.47059 * 175.00083 * 19 16 15 21 21 C 1.36943 * 119.99752 * 179.72430 * 20 19 16 22 22 H 1.08002 * 119.99793 * 0.27665 * 21 20 19 23 23 C 1.38811 * 120.00012 * 180.27737 * 21 20 19 24 24 N 1.31624 * 119.99698 * 0.02562 * 23 21 20 25 25 Si 1.86795 * 120.00072 * 180.02562 * 23 21 20 26 26 H 1.48503 * 109.47294 * 90.00155 * 25 23 21 27 27 H 1.48499 * 109.47218 * 210.00015 * 25 23 21 28 28 H 1.48496 * 109.47166 * 329.99846 * 25 23 21 29 29 H 1.08997 * 109.47262 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46936 * 300.00400 * 1 2 3 31 31 H 1.09005 * 109.46628 * 60.00214 * 1 2 3 32 32 H 0.96998 * 120.00091 * 95.00035 * 4 2 1 33 33 H 1.07994 * 123.35432 * 359.97438 * 8 7 5 34 34 H 1.08002 * 122.45291 * 180.02562 * 9 8 7 35 35 H 1.07992 * 124.52880 * 180.02562 * 10 9 8 36 36 H 0.97004 * 119.99945 * 359.97438 * 14 12 2 37 37 H 1.09005 * 109.47000 * 60.00500 * 15 14 12 38 38 H 1.08996 * 109.47381 * 300.00104 * 15 14 12 39 39 H 1.09000 * 109.46973 * 59.99593 * 18 16 15 40 40 H 1.08995 * 109.47053 * 180.02562 * 18 16 15 41 41 H 1.09001 * 109.46930 * 299.99894 * 18 16 15 42 42 H 1.09004 * 109.47066 * 55.00351 * 19 16 15 43 43 H 1.08994 * 109.46974 * 295.00498 * 19 16 15 44 44 H 0.97001 * 120.00384 * 0.02562 * 20 19 16 45 45 H 0.96999 * 119.99739 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1469 -0.0181 2.3571 6 8 1.8580 1.1628 2.4117 7 6 2.6350 -0.7092 3.5542 8 6 2.8081 -0.1387 4.7837 9 6 3.2797 -1.0178 5.7295 10 6 3.4858 -2.2656 5.2922 11 16 3.0840 -2.4071 3.6400 12 6 2.0324 -0.7105 -1.2304 13 8 2.7296 -1.6965 -1.1191 14 7 1.7069 -0.2501 -2.4545 15 6 2.1957 -0.9405 -3.6506 16 6 1.6851 -0.2197 -4.9000 17 1 0.5988 -0.1422 -4.8563 18 6 2.2943 1.1824 -4.9645 19 6 2.0904 -1.0096 -6.1460 20 7 1.5011 -0.3854 -7.3330 21 6 1.7322 -0.9185 -8.5731 22 1 2.3453 -1.8017 -8.6754 23 6 1.1785 -0.3237 -9.6985 24 7 0.4318 0.7531 -9.5737 25 14 1.4932 -1.0513 -11.3899 26 1 0.4387 -2.0487 -11.7037 27 1 1.4691 0.0309 -12.4065 28 1 2.8218 -1.7143 -11.4042 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 2.2490 -1.6317 1.1527 33 1 2.5964 0.8997 4.9916 34 1 3.4692 -0.7232 6.7512 35 1 3.8525 -3.0761 5.9044 36 1 1.1489 0.5384 -2.5436 37 1 1.8326 -1.9683 -3.6508 38 1 3.2856 -0.9401 -3.6504 39 1 3.3806 1.1049 -5.0081 40 1 1.9302 1.6961 -5.8543 41 1 2.0055 1.7452 -4.0769 42 1 1.7315 -2.0352 -6.0587 43 1 3.1765 -1.0114 -6.2376 44 1 0.9508 0.4081 -7.2412 45 1 0.0446 1.1685 -10.3601 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698761671.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:14 Heat of formation + Delta-G solvation = -36.962626 kcal Electronic energy + Delta-G solvation = -25838.340855 eV Core-core repulsion = 21982.581121 eV Total energy + Delta-G solvation = -3855.759734 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.71196 -39.55477 -37.91083 -36.95997 -35.27948 -34.51605 -32.73666 -31.56991 -30.11321 -29.62532 -26.70347 -25.81747 -25.45073 -24.15336 -22.52887 -21.61651 -20.64219 -20.19418 -19.61427 -19.17526 -17.46426 -16.96185 -16.75864 -16.15913 -16.03250 -15.67708 -15.40874 -15.12735 -14.52760 -14.46839 -14.07682 -13.88018 -13.72039 -13.44616 -13.22372 -13.08157 -13.00922 -12.82056 -12.63029 -12.56899 -12.35326 -12.11411 -11.95225 -11.41938 -11.09487 -10.94148 -10.75452 -10.61147 -10.50082 -10.47084 -10.16994 -10.00036 -9.71537 -9.60937 -9.31444 -9.18146 -9.05758 -8.89622 -6.94460 -5.78953 -3.07492 0.05201 1.01287 1.42508 1.94398 2.34410 2.44889 2.80826 3.13616 3.42732 3.48128 3.49621 4.26838 4.43288 4.54398 4.57370 4.67057 4.77086 4.84398 4.98021 5.01347 5.15805 5.20678 5.33370 5.38126 5.49211 5.55754 5.70292 5.74681 5.76774 5.84750 5.86876 5.91408 5.92958 6.05862 6.18646 6.32511 6.38348 6.61933 6.73404 6.82654 7.02163 7.26965 7.68708 7.72350 7.94074 8.40130 9.51499 10.08442 10.43122 11.43954 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.034708 B = 0.001626 C = 0.001580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.547374 B =17217.395053 C =17713.889333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.126 3.874 3 H 0.118 0.882 4 N -0.709 5.709 5 C 0.596 3.404 6 O -0.529 6.529 7 C -0.270 4.270 8 C -0.053 4.053 9 C -0.152 4.152 10 C -0.230 4.230 11 S 0.212 5.788 12 C 0.509 3.491 13 O -0.539 6.539 14 N -0.716 5.716 15 C 0.126 3.874 16 C -0.111 4.111 17 H 0.077 0.923 18 C -0.143 4.143 19 C 0.161 3.839 20 N -0.730 5.730 21 C -0.240 4.240 22 H 0.071 0.929 23 C -0.014 4.014 24 N -0.934 5.934 25 Si 0.908 3.092 26 H -0.290 1.290 27 H -0.291 1.291 28 H -0.282 1.282 29 H 0.066 0.934 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.408 0.592 33 H 0.155 0.845 34 H 0.146 0.854 35 H 0.170 0.830 36 H 0.403 0.597 37 H 0.071 0.929 38 H 0.070 0.930 39 H 0.053 0.947 40 H 0.070 0.930 41 H 0.042 0.958 42 H 0.021 0.979 43 H 0.022 0.978 44 H 0.384 0.616 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.008 -3.336 32.046 32.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.017 3.983 3 H 0.136 0.864 4 N -0.362 5.362 5 C 0.383 3.617 6 O -0.407 6.407 7 C -0.390 4.390 8 C -0.087 4.087 9 C -0.183 4.183 10 C -0.368 4.368 11 S 0.479 5.521 12 C 0.294 3.706 13 O -0.416 6.416 14 N -0.367 5.367 15 C 0.003 3.997 16 C -0.130 4.130 17 H 0.096 0.904 18 C -0.200 4.200 19 C 0.032 3.968 20 N -0.375 5.375 21 C -0.371 4.371 22 H 0.089 0.911 23 C -0.210 4.210 24 N -0.583 5.583 25 Si 0.739 3.261 26 H -0.217 1.217 27 H -0.218 1.218 28 H -0.208 1.208 29 H 0.085 0.915 30 H 0.094 0.906 31 H 0.095 0.905 32 H 0.245 0.755 33 H 0.172 0.828 34 H 0.164 0.836 35 H 0.187 0.813 36 H 0.239 0.761 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.072 0.928 40 H 0.089 0.911 41 H 0.061 0.939 42 H 0.039 0.961 43 H 0.040 0.960 44 H 0.218 0.782 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 3.408 -4.534 30.940 31.456 hybrid contribution -0.131 0.917 0.120 0.934 sum 3.277 -3.616 31.060 31.441 Atomic orbital electron populations 1.22158 0.92360 1.03460 1.03971 1.20814 0.95989 0.98209 0.83265 0.86393 1.45595 1.67549 1.14645 1.08452 1.16890 0.77175 0.86028 0.81653 1.90840 1.50386 1.14804 1.84630 1.24571 1.16656 0.98888 0.98900 1.20820 0.96195 1.01508 0.90164 1.20070 1.04071 0.92500 1.01648 1.25405 1.08136 1.02372 1.00861 1.83274 1.58398 1.05472 1.04965 1.20458 0.80509 0.84821 0.84853 1.90708 1.37978 1.26319 1.86611 1.45988 1.53119 1.32134 1.05473 1.21482 0.99526 0.96160 0.82568 1.21564 1.01007 0.96296 0.94119 0.90416 1.21805 1.00910 0.95685 1.01598 1.20569 0.96234 0.94475 0.85478 1.42330 1.60396 1.33562 1.01220 1.19240 1.25617 1.08224 0.84047 0.91148 1.24735 1.00395 0.97939 0.97899 1.69657 1.37909 1.21924 1.28765 0.86177 0.77752 0.77913 0.84275 1.21723 1.21773 1.20762 0.91522 0.90599 0.90464 0.75483 0.82779 0.83598 0.81261 0.76140 0.91098 0.91124 0.92779 0.91057 0.93867 0.96128 0.96003 0.78196 0.93521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.25 9.38 37.16 0.35 -0.90 16 2 C 0.13 1.19 2.98 -69.08 -0.21 0.98 16 3 H 0.12 1.11 7.58 -51.93 -0.39 0.72 16 4 N -0.71 -7.06 4.95 -56.27 -0.28 -7.34 16 5 C 0.60 6.52 7.75 -12.90 -0.10 6.42 16 6 O -0.53 -7.13 16.50 5.19 0.09 -7.04 16 7 C -0.27 -2.45 6.45 -36.79 -0.24 -2.68 16 8 C -0.05 -0.42 10.01 -40.44 -0.40 -0.83 16 9 C -0.15 -0.92 10.15 -41.41 -0.42 -1.34 16 10 C -0.23 -1.28 10.92 29.18 0.32 -0.96 16 11 S 0.21 1.43 22.16 -107.50 -2.38 -0.95 16 12 C 0.51 5.78 7.22 -10.99 -0.08 5.70 16 13 O -0.54 -7.83 15.84 5.56 0.09 -7.74 16 14 N -0.72 -7.47 5.18 -60.29 -0.31 -7.78 16 15 C 0.13 1.60 5.06 -4.04 -0.02 1.58 16 16 C -0.11 -1.61 2.46 -90.62 -0.22 -1.83 16 17 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 18 C -0.14 -2.01 8.94 37.16 0.33 -1.68 16 19 C 0.16 3.09 5.65 -4.04 -0.02 3.07 16 20 N -0.73 -17.95 5.33 -59.91 -0.32 -18.27 16 21 C -0.24 -6.65 9.99 -15.06 -0.15 -6.80 16 22 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 23 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 24 N -0.93 -27.84 13.06 55.49 0.72 -27.12 16 25 Si 0.91 22.27 29.55 -169.99 -5.02 17.25 16 26 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 27 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 28 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 29 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.08 0.48 7.56 -51.93 -0.39 0.09 16 32 H 0.41 3.90 6.90 -40.82 -0.28 3.62 16 33 H 0.15 1.14 8.06 -52.49 -0.42 0.72 16 34 H 0.15 0.56 8.06 -52.49 -0.42 0.14 16 35 H 0.17 0.53 8.06 -52.49 -0.42 0.11 16 36 H 0.40 3.34 7.07 -40.82 -0.29 3.05 16 37 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.07 1.20 7.18 -51.93 -0.37 0.82 16 41 H 0.04 0.48 7.18 -51.93 -0.37 0.11 16 42 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 43 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.38 9.81 6.85 -40.82 -0.28 9.53 16 45 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 392.13 15.07 5.91 5.91 Total: -1.00 -33.79 392.13 -9.05 -42.84 By element: Atomic # 1 Polarization: 16.58 SS G_CDS: -6.58 Total: 10.00 kcal Atomic # 6 Polarization: 1.20 SS G_CDS: -0.96 Total: 0.24 kcal Atomic # 7 Polarization: -60.32 SS G_CDS: -0.19 Total: -60.51 kcal Atomic # 8 Polarization: -14.95 SS G_CDS: 0.17 Total: -14.78 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Atomic # 16 Polarization: 1.43 SS G_CDS: -2.38 Total: -0.95 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -33.79 -9.05 -42.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698761671.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.879 kcal (2) G-P(sol) polarization free energy of solvation -33.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds