Wall clock time and date at job start Sat Apr 11 2020 05:40:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47262 * 2 1 4 4 N 1.46502 * 109.46920 * 119.99775 * 2 1 3 5 5 C 1.34776 * 119.99664 * 275.00160 * 4 2 1 6 6 O 1.21698 * 120.00547 * 359.97438 * 5 4 2 7 7 C 1.46583 * 119.99593 * 179.97438 * 5 4 2 8 8 C 1.36652 * 125.45644 * 179.97438 * 7 5 4 9 9 C 1.37468 * 113.29737 * 180.02562 * 8 7 5 10 10 C 1.33822 * 115.10479 * 359.97438 * 9 8 7 11 11 S 1.70622 * 110.94874 * 359.72938 * 10 9 8 12 12 C 1.50700 * 109.47182 * 239.99728 * 2 1 3 13 13 O 1.21282 * 119.99977 * 240.00076 * 12 2 1 14 14 N 1.34771 * 120.00222 * 60.00215 * 12 2 1 15 15 C 1.46500 * 120.00026 * 179.97438 * 14 12 2 16 16 C 1.53004 * 109.47129 * 179.97438 * 15 14 12 17 17 H 1.08999 * 109.47217 * 305.00580 * 16 15 14 18 18 C 1.53008 * 109.46816 * 65.00299 * 16 15 14 19 19 C 1.52996 * 109.47336 * 184.99981 * 16 15 14 20 20 N 1.46498 * 109.47059 * 175.00083 * 19 16 15 21 21 C 1.36943 * 119.99752 * 179.72430 * 20 19 16 22 22 H 1.08002 * 119.99793 * 0.27665 * 21 20 19 23 23 C 1.38811 * 120.00012 * 180.27737 * 21 20 19 24 24 N 1.31624 * 119.99698 * 0.02562 * 23 21 20 25 25 Si 1.86795 * 120.00072 * 180.02562 * 23 21 20 26 26 H 1.48503 * 109.47294 * 90.00155 * 25 23 21 27 27 H 1.48499 * 109.47218 * 210.00015 * 25 23 21 28 28 H 1.48496 * 109.47166 * 329.99846 * 25 23 21 29 29 H 1.08997 * 109.47262 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46936 * 300.00400 * 1 2 3 31 31 H 1.09005 * 109.46628 * 60.00214 * 1 2 3 32 32 H 0.96998 * 120.00091 * 95.00035 * 4 2 1 33 33 H 1.07994 * 123.35432 * 359.97438 * 8 7 5 34 34 H 1.08002 * 122.45291 * 180.02562 * 9 8 7 35 35 H 1.07992 * 124.52880 * 180.02562 * 10 9 8 36 36 H 0.97004 * 119.99945 * 359.97438 * 14 12 2 37 37 H 1.09005 * 109.47000 * 60.00500 * 15 14 12 38 38 H 1.08996 * 109.47381 * 300.00104 * 15 14 12 39 39 H 1.09000 * 109.46973 * 59.99593 * 18 16 15 40 40 H 1.08995 * 109.47053 * 180.02562 * 18 16 15 41 41 H 1.09001 * 109.46930 * 299.99894 * 18 16 15 42 42 H 1.09004 * 109.47066 * 55.00351 * 19 16 15 43 43 H 1.08994 * 109.46974 * 295.00498 * 19 16 15 44 44 H 0.97001 * 120.00384 * 0.02562 * 20 19 16 45 45 H 0.96999 * 119.99739 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1469 -0.0181 2.3571 6 8 1.8580 1.1628 2.4117 7 6 2.6350 -0.7092 3.5542 8 6 2.8081 -0.1387 4.7837 9 6 3.2797 -1.0178 5.7295 10 6 3.4858 -2.2656 5.2922 11 16 3.0840 -2.4071 3.6400 12 6 2.0324 -0.7105 -1.2304 13 8 2.7296 -1.6965 -1.1191 14 7 1.7069 -0.2501 -2.4545 15 6 2.1957 -0.9405 -3.6506 16 6 1.6851 -0.2197 -4.9000 17 1 0.5988 -0.1422 -4.8563 18 6 2.2943 1.1824 -4.9645 19 6 2.0904 -1.0096 -6.1460 20 7 1.5011 -0.3854 -7.3330 21 6 1.7322 -0.9185 -8.5731 22 1 2.3453 -1.8017 -8.6754 23 6 1.1785 -0.3237 -9.6985 24 7 0.4318 0.7531 -9.5737 25 14 1.4932 -1.0513 -11.3899 26 1 0.4387 -2.0487 -11.7037 27 1 1.4691 0.0309 -12.4065 28 1 2.8218 -1.7143 -11.4042 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 2.2490 -1.6317 1.1527 33 1 2.5964 0.8997 4.9916 34 1 3.4692 -0.7232 6.7512 35 1 3.8525 -3.0761 5.9044 36 1 1.1489 0.5384 -2.5436 37 1 1.8326 -1.9683 -3.6508 38 1 3.2856 -0.9401 -3.6504 39 1 3.3806 1.1049 -5.0081 40 1 1.9302 1.6961 -5.8543 41 1 2.0055 1.7452 -4.0769 42 1 1.7315 -2.0352 -6.0587 43 1 3.1765 -1.0114 -6.2376 44 1 0.9508 0.4081 -7.2412 45 1 0.0446 1.1685 -10.3601 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698761671.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:13 Heat of formation + Delta-G solvation = -60.878894 kcal Electronic energy + Delta-G solvation = -25839.377942 eV Core-core repulsion = 21982.581121 eV Total energy + Delta-G solvation = -3856.796822 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.58195 -40.43109 -38.52830 -38.21487 -36.18032 -35.98238 -34.23726 -32.56502 -31.67610 -30.30637 -27.82391 -27.18578 -26.33494 -25.15439 -24.09079 -22.42728 -21.61508 -21.24349 -20.43338 -19.85489 -19.15558 -18.03546 -17.68102 -16.99431 -16.88135 -16.60562 -16.49179 -16.24081 -15.82764 -15.55849 -15.43184 -15.07121 -14.74479 -14.57675 -14.33839 -13.97631 -13.71831 -13.69887 -13.58077 -13.49119 -13.39580 -13.18863 -12.95120 -12.80598 -12.70488 -12.17841 -12.16366 -11.99437 -11.93819 -11.70857 -11.64980 -11.34040 -11.04917 -10.93298 -10.45237 -10.16498 -9.87740 -9.56250 -8.98059 -7.94851 -5.22803 -0.52289 0.47374 0.92619 1.36649 1.43459 1.48462 1.49540 1.57991 1.63994 2.09010 2.27388 2.57332 3.39111 3.46189 3.70990 3.73984 3.95159 3.98206 4.04857 4.09256 4.14066 4.34583 4.35502 4.53636 4.55648 4.57742 4.71724 4.73011 4.78470 4.94840 5.00993 5.05103 5.13406 5.14693 5.14816 5.20593 5.28711 5.35538 5.39563 5.48658 5.51198 6.24305 6.27880 6.39369 6.92945 7.05124 7.34991 8.10736 8.34461 9.28459 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.034708 B = 0.001626 C = 0.001580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.547374 B =17217.395053 C =17713.889333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.128 3.872 3 H 0.121 0.879 4 N -0.707 5.707 5 C 0.595 3.405 6 O -0.563 6.563 7 C -0.305 4.305 8 C -0.054 4.054 9 C -0.160 4.160 10 C -0.217 4.217 11 S 0.221 5.779 12 C 0.513 3.487 13 O -0.571 6.571 14 N -0.704 5.704 15 C 0.139 3.861 16 C -0.094 4.094 17 H 0.082 0.918 18 C -0.138 4.138 19 C 0.156 3.844 20 N -0.741 5.741 21 C -0.247 4.247 22 H 0.074 0.926 23 C -0.073 4.073 24 N -0.967 5.967 25 Si 0.972 3.028 26 H -0.287 1.287 27 H -0.295 1.295 28 H -0.271 1.271 29 H 0.067 0.933 30 H 0.070 0.930 31 H 0.096 0.904 32 H 0.410 0.590 33 H 0.152 0.848 34 H 0.171 0.829 35 H 0.199 0.801 36 H 0.416 0.584 37 H 0.067 0.933 38 H 0.066 0.934 39 H 0.050 0.950 40 H 0.042 0.958 41 H 0.076 0.924 42 H 0.021 0.979 43 H 0.020 0.980 44 H 0.376 0.624 45 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.408 -4.261 33.597 34.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.020 3.980 3 H 0.138 0.862 4 N -0.360 5.360 5 C 0.383 3.617 6 O -0.444 6.444 7 C -0.425 4.425 8 C -0.088 4.088 9 C -0.190 4.190 10 C -0.355 4.355 11 S 0.488 5.512 12 C 0.299 3.701 13 O -0.450 6.450 14 N -0.357 5.357 15 C 0.014 3.986 16 C -0.113 4.113 17 H 0.100 0.900 18 C -0.195 4.195 19 C 0.029 3.971 20 N -0.384 5.384 21 C -0.379 4.379 22 H 0.092 0.908 23 C -0.266 4.266 24 N -0.618 5.618 25 Si 0.801 3.199 26 H -0.214 1.214 27 H -0.222 1.222 28 H -0.196 1.196 29 H 0.086 0.914 30 H 0.089 0.911 31 H 0.114 0.886 32 H 0.247 0.753 33 H 0.170 0.830 34 H 0.188 0.812 35 H 0.216 0.784 36 H 0.254 0.746 37 H 0.085 0.915 38 H 0.084 0.916 39 H 0.069 0.931 40 H 0.061 0.939 41 H 0.095 0.905 42 H 0.039 0.961 43 H 0.038 0.962 44 H 0.209 0.791 45 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 3.815 -5.482 32.508 33.187 hybrid contribution -0.201 1.140 -0.260 1.186 sum 3.614 -4.342 32.248 32.739 Atomic orbital electron populations 1.22139 0.90809 1.03747 1.04680 1.20854 0.97079 0.97825 0.82202 0.86174 1.45626 1.67263 1.14690 1.08435 1.17163 0.76567 0.85714 0.82248 1.90806 1.52164 1.16163 1.85250 1.24535 1.18896 1.00441 0.98649 1.21040 0.95604 1.01875 0.90320 1.20289 1.03958 0.92299 1.02427 1.25811 1.06414 1.02996 1.00262 1.83230 1.58136 1.03718 1.06097 1.20712 0.79778 0.84292 0.85316 1.90697 1.39455 1.27831 1.87047 1.45807 1.52956 1.32301 1.04593 1.21191 0.99130 0.95839 0.82415 1.21341 1.01241 0.95989 0.92778 0.89997 1.21749 1.00570 0.95388 1.01802 1.20731 0.95719 0.94883 0.85756 1.42503 1.60507 1.33467 1.01967 1.19638 1.24776 1.08031 0.85486 0.90834 1.25522 1.00905 0.98673 1.01460 1.69802 1.39289 1.23342 1.29334 0.85164 0.77955 0.76977 0.79802 1.21413 1.22162 1.19634 0.91421 0.91076 0.88563 0.75272 0.83008 0.81199 0.78415 0.74589 0.91463 0.91605 0.93050 0.93931 0.90538 0.96056 0.96188 0.79078 0.94005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.20 9.38 71.98 0.68 -1.52 16 2 C 0.13 2.32 2.98 44.25 0.13 2.45 16 3 H 0.12 2.16 7.58 -2.39 -0.02 2.15 16 4 N -0.71 -13.93 4.95 -450.17 -2.23 -16.16 16 5 C 0.59 13.14 7.75 86.42 0.67 13.81 16 6 O -0.56 -15.47 16.50 -4.34 -0.07 -15.54 16 7 C -0.31 -5.46 6.45 24.08 0.16 -5.30 16 8 C -0.05 -0.82 10.01 21.72 0.22 -0.60 16 9 C -0.16 -1.61 10.15 21.08 0.21 -1.40 16 10 C -0.22 -1.89 10.92 66.82 0.73 -1.16 16 11 S 0.22 2.72 22.16 -56.49 -1.25 1.47 16 12 C 0.51 11.04 7.22 87.66 0.63 11.67 16 13 O -0.57 -16.15 15.84 -3.04 -0.05 -16.20 16 14 N -0.70 -13.39 5.18 -463.06 -2.40 -15.79 16 15 C 0.14 3.31 5.06 86.38 0.44 3.75 16 16 C -0.09 -2.63 2.46 -10.79 -0.03 -2.66 16 17 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 18 C -0.14 -3.73 8.94 71.98 0.64 -3.09 16 19 C 0.16 5.94 5.65 86.38 0.49 6.42 16 20 N -0.74 -36.57 5.33 -343.46 -1.83 -38.40 16 21 C -0.25 -13.71 9.99 84.03 0.84 -12.87 16 22 H 0.07 3.94 7.83 -2.91 -0.02 3.92 16 23 C -0.07 -4.17 5.50 84.86 0.47 -3.70 16 24 N -0.97 -58.29 13.06 21.65 0.28 -58.01 16 25 Si 0.97 45.85 29.55 68.60 2.03 47.88 16 26 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 27 H -0.30 -13.98 7.11 99.48 0.71 -13.28 16 28 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 29 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.10 0.98 7.56 -2.38 -0.02 0.96 16 32 H 0.41 7.76 6.90 -92.71 -0.64 7.12 16 33 H 0.15 2.27 8.06 -2.91 -0.02 2.24 16 34 H 0.17 0.83 8.06 -2.91 -0.02 0.81 16 35 H 0.20 0.53 8.06 -2.91 -0.02 0.51 16 36 H 0.42 5.83 7.07 -92.71 -0.66 5.18 16 37 H 0.07 1.70 8.14 -2.38 -0.02 1.68 16 38 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 39 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 40 H 0.04 1.41 7.18 -2.39 -0.02 1.39 16 41 H 0.08 1.54 7.18 -2.39 -0.02 1.53 16 42 H 0.02 0.82 8.14 -2.38 -0.02 0.80 16 43 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 44 H 0.38 19.49 6.85 -92.71 -0.63 18.86 16 45 H 0.25 14.70 8.31 -92.71 -0.77 13.93 16 Total: -1.00 -73.01 392.13 -0.14 -73.15 By element: Atomic # 1 Polarization: 32.69 SS G_CDS: -0.90 Total: 31.79 kcal Atomic # 6 Polarization: -0.48 SS G_CDS: 6.28 Total: 5.79 kcal Atomic # 7 Polarization: -122.18 SS G_CDS: -6.17 Total: -128.35 kcal Atomic # 8 Polarization: -31.61 SS G_CDS: -0.12 Total: -31.73 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 2.03 Total: 47.88 kcal Atomic # 16 Polarization: 2.72 SS G_CDS: -1.25 Total: 1.47 kcal Total: -73.01 -0.14 -73.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698761671.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.276 kcal (2) G-P(sol) polarization free energy of solvation -73.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds