Wall clock time and date at job start Sat Apr 11 2020 05:40:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 H 1.09002 * 109.47397 * 2 1 4 4 C 1.52999 * 109.47550 * 240.00069 * 2 1 3 5 5 N 1.46503 * 109.47537 * 185.00062 * 4 2 1 6 6 C 1.36931 * 119.99730 * 179.97438 * 5 4 2 7 7 H 1.07992 * 120.00764 * 359.97438 * 6 5 4 8 8 C 1.38815 * 119.99418 * 180.02562 * 6 5 4 9 9 N 1.31614 * 120.00477 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 119.99773 * 179.97438 * 8 6 5 11 11 H 1.48504 * 109.47067 * 60.00282 * 10 8 6 12 12 H 1.48508 * 109.47233 * 179.97438 * 10 8 6 13 13 H 1.48491 * 109.47544 * 299.99954 * 10 8 6 14 14 N 1.46500 * 109.47068 * 119.99840 * 2 1 3 15 15 C 1.46499 * 120.00123 * 60.00208 * 14 2 1 16 16 C 1.34779 * 120.00169 * 239.99876 * 14 2 1 17 17 O 1.21282 * 119.99922 * 0.02562 * 16 14 2 18 18 C 1.50699 * 120.00037 * 180.02562 * 16 14 2 19 19 C 1.53006 * 109.46866 * 180.02562 * 18 16 14 20 20 N 1.46500 * 109.46998 * 179.97438 * 19 18 16 21 21 C 1.34769 * 120.00237 * 180.02562 * 20 19 18 22 22 O 1.21701 * 119.99994 * 359.97438 * 21 20 19 23 23 C 1.46586 * 120.00255 * 179.97438 * 21 20 19 24 24 C 1.36647 * 125.45967 * 179.97438 * 23 21 20 25 25 C 1.37473 * 113.29946 * 179.97438 * 24 23 21 26 26 C 1.33818 * 115.09508 * 0.02562 * 25 24 23 27 27 S 1.70611 * 110.95754 * 359.75676 * 26 25 24 28 28 H 1.09002 * 109.47680 * 300.00217 * 1 2 3 29 29 H 1.09001 * 109.47350 * 59.99986 * 1 2 3 30 30 H 1.09002 * 109.47397 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47153 * 305.00109 * 4 2 1 32 32 H 1.09001 * 109.47303 * 65.00009 * 4 2 1 33 33 H 0.97003 * 119.99560 * 359.97438 * 5 4 2 34 34 H 0.97004 * 120.00438 * 180.02562 * 9 8 6 35 35 H 1.09002 * 109.47085 * 270.00430 * 15 14 2 36 36 H 1.09002 * 109.46740 * 30.00103 * 15 14 2 37 37 H 1.09001 * 109.47266 * 149.99827 * 15 14 2 38 38 H 1.09000 * 109.47247 * 60.00371 * 18 16 14 39 39 H 1.09001 * 109.47358 * 299.99798 * 18 16 14 40 40 H 1.08993 * 109.46955 * 300.00219 * 19 18 16 41 41 H 1.09000 * 109.47050 * 60.00048 * 19 18 16 42 42 H 0.97010 * 119.99909 * 359.97438 * 20 19 18 43 43 H 1.08004 * 123.34854 * 359.94820 * 24 23 21 44 44 H 1.07997 * 122.45253 * 180.02562 * 25 24 23 45 45 H 1.08004 * 124.51840 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 3.5001 -0.8264 -1.1905 6 6 4.1837 -1.4388 -2.2067 7 1 3.6467 -1.8447 -3.0511 8 6 5.5671 -1.5388 -2.1508 9 7 6.2217 -1.0447 -1.1214 10 14 6.4998 -2.3749 -3.5366 11 1 6.2434 -1.6558 -4.8103 12 1 7.9547 -2.3507 -3.2394 13 1 6.0432 -3.7823 -3.6621 14 7 2.0182 -0.6906 1.1962 15 6 1.6643 -2.0932 1.4281 16 6 2.7931 -0.0356 2.0834 17 8 3.0857 1.1257 1.8917 18 6 3.2959 -0.7462 3.3135 19 6 4.1453 0.2158 4.1467 20 7 4.6336 -0.4748 5.3429 21 6 5.4075 0.1805 6.2306 22 8 5.7011 1.3458 6.0383 23 6 5.8956 -0.5103 7.4278 24 6 6.6840 0.0437 8.3967 25 6 6.9945 -0.8308 9.4110 26 6 6.4798 -2.0589 9.2789 27 16 5.5551 -2.1827 7.8505 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.6054 -1.7198 -1.2952 32 1 1.7517 -0.1583 -2.1370 33 1 3.9824 -0.4621 -0.4318 34 1 7.1885 -1.1143 -1.0825 35 1 0.7374 -2.1444 1.9993 36 1 1.5295 -2.5968 0.4708 37 1 2.4628 -2.5818 1.9864 38 1 3.9016 -1.6023 3.0166 39 1 2.4483 -1.0891 3.9070 40 1 4.9928 0.5591 3.5535 41 1 3.5392 1.0717 4.4437 42 1 4.3992 -1.4035 5.4965 43 1 7.0291 1.0667 8.3683 44 1 7.6089 -0.5473 10.2527 45 1 6.6264 -2.8631 9.9848 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698857934.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:16 Heat of formation + Delta-G solvation = -22.878775 kcal Electronic energy + Delta-G solvation = -26706.693826 eV Core-core repulsion = 22851.544813 eV Total energy + Delta-G solvation = -3855.149013 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.05067 -39.55938 -37.76230 -36.51067 -35.11884 -33.99821 -32.24919 -31.08481 -30.11371 -29.48411 -26.65337 -25.75998 -25.48966 -23.88463 -22.55013 -21.45012 -20.81493 -19.57987 -18.98563 -18.39642 -17.16332 -17.06172 -16.23226 -16.02201 -16.00465 -15.48659 -15.12792 -15.00119 -14.59438 -14.02973 -13.74933 -13.55360 -13.41092 -13.25226 -13.08977 -13.04990 -12.62604 -12.57494 -12.40424 -12.29526 -12.15451 -11.86273 -11.66735 -11.53720 -11.34634 -11.31788 -10.83265 -10.76002 -10.46531 -10.22575 -10.07028 -9.68702 -9.44523 -9.32456 -9.07072 -8.92019 -8.85828 -8.27221 -6.89321 -5.72306 -3.01905 0.21790 1.14578 1.54512 2.12393 2.83324 2.98580 3.07651 3.42372 3.44515 3.49161 3.50505 4.52430 4.60098 4.65182 4.82906 4.85256 4.98815 5.07483 5.16403 5.25478 5.31866 5.41656 5.48742 5.56745 5.62018 5.63366 5.66670 5.83479 5.89337 5.94714 6.00041 6.05688 6.08678 6.10517 6.19189 6.27030 6.37341 6.51178 6.72515 6.98121 7.28535 7.70110 7.72311 8.02880 8.45042 8.52355 9.56539 10.15133 10.50591 11.49563 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011097 B = 0.002600 C = 0.002291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2522.557869 B =10766.899210 C =12216.635936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.125 3.875 3 H 0.100 0.900 4 C 0.143 3.857 5 N -0.728 5.728 6 C -0.243 4.243 7 H 0.068 0.932 8 C -0.012 4.012 9 N -0.928 5.928 10 Si 0.906 3.094 11 H -0.286 1.286 12 H -0.291 1.291 13 H -0.287 1.287 14 N -0.596 5.596 15 C 0.081 3.919 16 C 0.523 3.477 17 O -0.536 6.536 18 C -0.151 4.151 19 C 0.135 3.865 20 N -0.725 5.725 21 C 0.589 3.411 22 O -0.523 6.523 23 C -0.261 4.261 24 C -0.058 4.058 25 C -0.149 4.149 26 C -0.232 4.232 27 S 0.199 5.801 28 H 0.054 0.946 29 H 0.066 0.934 30 H 0.056 0.944 31 H 0.020 0.980 32 H 0.028 0.972 33 H 0.386 0.614 34 H 0.255 0.745 35 H 0.048 0.952 36 H 0.078 0.922 37 H 0.068 0.932 38 H 0.104 0.896 39 H 0.094 0.906 40 H 0.086 0.914 41 H 0.078 0.922 42 H 0.396 0.604 43 H 0.155 0.845 44 H 0.146 0.854 45 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.824 -5.670 21.393 23.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.022 3.978 3 H 0.118 0.882 4 C 0.015 3.985 5 N -0.372 5.372 6 C -0.374 4.374 7 H 0.086 0.914 8 C -0.208 4.208 9 N -0.576 5.576 10 Si 0.737 3.263 11 H -0.213 1.213 12 H -0.217 1.217 13 H -0.214 1.214 14 N -0.329 5.329 15 C -0.062 4.062 16 C 0.310 3.690 17 O -0.412 6.412 18 C -0.191 4.191 19 C 0.012 3.988 20 N -0.377 5.377 21 C 0.374 3.626 22 O -0.400 6.400 23 C -0.382 4.382 24 C -0.091 4.091 25 C -0.180 4.180 26 C -0.370 4.370 27 S 0.466 5.534 28 H 0.073 0.927 29 H 0.085 0.915 30 H 0.075 0.925 31 H 0.038 0.962 32 H 0.045 0.955 33 H 0.220 0.780 34 H 0.065 0.935 35 H 0.067 0.933 36 H 0.097 0.903 37 H 0.087 0.913 38 H 0.122 0.878 39 H 0.113 0.887 40 H 0.104 0.896 41 H 0.097 0.903 42 H 0.230 0.770 43 H 0.172 0.828 44 H 0.163 0.837 45 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -8.256 -5.465 20.300 22.586 hybrid contribution 1.548 -0.019 0.274 1.572 sum -6.708 -5.484 20.574 22.324 Atomic orbital electron populations 1.22042 0.95176 1.01983 1.02020 1.21393 0.93227 0.98604 0.84621 0.88150 1.21001 0.87148 0.96693 0.93671 1.42290 0.99654 1.70102 1.25173 1.19150 0.89431 1.29565 0.99235 0.91378 1.24746 0.96439 1.01627 0.98018 1.69669 1.07224 1.50573 1.30173 0.86294 0.79062 0.79161 0.81766 1.21321 1.21709 1.21384 1.47642 1.50666 1.12186 1.22454 1.21709 0.99694 0.82023 1.02777 1.20105 0.77986 0.86864 0.84015 1.90731 1.56900 1.17056 1.76540 1.21808 1.01192 1.00451 0.95691 1.21128 0.99031 0.94291 0.84320 1.45843 1.52603 1.15412 1.23817 1.16898 0.78297 0.86011 0.81395 1.90872 1.57371 1.15849 1.75898 1.24703 1.11670 0.99051 1.02773 1.20845 0.95261 1.01467 0.91546 1.20071 1.03973 0.92774 1.01215 1.25325 1.05425 1.02503 1.03702 1.82991 1.46925 1.07882 1.15602 0.92694 0.91456 0.92454 0.96224 0.95465 0.77955 0.93489 0.93320 0.90331 0.91301 0.87757 0.88720 0.89578 0.90322 0.77029 0.82772 0.83662 0.81367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 9.19 37.15 0.34 -1.58 16 2 C 0.12 2.10 2.80 -67.94 -0.19 1.91 16 3 H 0.10 1.96 6.90 -51.93 -0.36 1.60 16 4 C 0.14 2.86 5.50 -4.04 -0.02 2.83 16 5 N -0.73 -18.66 5.43 -59.91 -0.33 -18.98 16 6 C -0.24 -6.83 9.99 -15.06 -0.15 -6.98 16 7 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 8 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 9 N -0.93 -28.59 13.06 55.49 0.72 -27.87 16 10 Si 0.91 22.60 29.55 -169.99 -5.02 17.58 16 11 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 12 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 13 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 14 N -0.60 -9.38 2.24 -173.94 -0.39 -9.77 16 15 C 0.08 0.99 9.30 59.85 0.56 1.54 16 16 C 0.52 8.92 7.38 -10.99 -0.08 8.84 16 17 O -0.54 -11.36 15.31 5.56 0.09 -11.28 16 18 C -0.15 -1.90 4.37 -27.88 -0.12 -2.02 16 19 C 0.14 1.94 4.96 -4.04 -0.02 1.92 16 20 N -0.73 -8.70 5.55 -61.65 -0.34 -9.04 16 21 C 0.59 8.25 7.78 -12.90 -0.10 8.15 16 22 O -0.52 -9.46 16.84 5.19 0.09 -9.37 16 23 C -0.26 -2.89 6.45 -36.79 -0.24 -3.13 16 24 C -0.06 -0.58 10.01 -40.44 -0.40 -0.99 16 25 C -0.15 -1.14 10.15 -41.41 -0.42 -1.56 16 26 C -0.23 -1.58 10.92 29.18 0.32 -1.26 16 27 S 0.20 1.51 22.16 -107.50 -2.38 -0.87 16 28 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 30 H 0.06 0.64 7.67 -51.93 -0.40 0.24 16 31 H 0.02 0.38 6.88 -51.93 -0.36 0.02 16 32 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.39 10.75 7.07 -40.82 -0.29 10.46 16 34 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 35 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.08 1.04 6.53 -51.93 -0.34 0.70 16 37 H 0.07 0.76 6.44 -51.93 -0.33 0.43 16 38 H 0.10 1.26 7.40 -51.93 -0.38 0.88 16 39 H 0.09 0.85 8.11 -51.93 -0.42 0.43 16 40 H 0.09 1.52 8.10 -51.93 -0.42 1.10 16 41 H 0.08 1.20 8.10 -51.93 -0.42 0.77 16 42 H 0.40 3.50 7.59 -40.82 -0.31 3.19 16 43 H 0.15 1.53 8.06 -52.48 -0.42 1.10 16 44 H 0.15 0.78 8.06 -52.49 -0.42 0.36 16 45 H 0.17 0.71 8.06 -52.48 -0.42 0.29 16 LS Contribution 389.44 15.07 5.87 5.87 Total: -1.00 -36.75 389.44 -8.86 -45.62 By element: Atomic # 1 Polarization: 17.43 SS G_CDS: -6.54 Total: 10.90 kcal Atomic # 6 Polarization: 7.85 SS G_CDS: -0.63 Total: 7.22 kcal Atomic # 7 Polarization: -65.33 SS G_CDS: -0.33 Total: -65.66 kcal Atomic # 8 Polarization: -20.82 SS G_CDS: 0.17 Total: -20.65 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -5.02 Total: 17.58 kcal Atomic # 16 Polarization: 1.51 SS G_CDS: -2.38 Total: -0.87 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -36.75 -8.86 -45.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698857934.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.737 kcal (2) G-P(sol) polarization free energy of solvation -36.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds