Wall clock time and date at job start Sat Apr 11 2020 05:40:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.46559 * 2 1 4 4 C 1.52994 * 109.47125 * 119.99682 * 2 1 3 5 5 N 1.46500 * 109.47077 * 175.00154 * 4 2 1 6 6 C 1.36943 * 119.99884 * 180.02562 * 5 4 2 7 7 H 1.08000 * 120.00140 * 0.02562 * 6 5 4 8 8 C 1.38812 * 119.99736 * 179.97438 * 6 5 4 9 9 N 1.31624 * 120.00007 * 0.02562 * 8 6 5 10 10 Si 1.86805 * 119.99911 * 180.02562 * 8 6 5 11 11 H 1.48504 * 109.46820 * 0.02562 * 10 8 6 12 12 H 1.48501 * 109.47120 * 120.00120 * 10 8 6 13 13 H 1.48497 * 109.46900 * 240.00416 * 10 8 6 14 14 N 1.46494 * 109.47283 * 240.00432 * 2 1 3 15 15 C 1.46501 * 120.00013 * 299.99607 * 14 2 1 16 16 C 1.34777 * 120.00229 * 119.99779 * 14 2 1 17 17 O 1.21277 * 120.00047 * 359.97438 * 16 14 2 18 18 C 1.50704 * 119.99791 * 179.97438 * 16 14 2 19 19 C 1.52998 * 109.46869 * 180.02562 * 18 16 14 20 20 N 1.46504 * 109.47226 * 179.97438 * 19 18 16 21 21 C 1.34774 * 119.99745 * 179.97438 * 20 19 18 22 22 O 1.21702 * 120.00519 * 359.97438 * 21 20 19 23 23 C 1.46584 * 119.99515 * 180.02562 * 21 20 19 24 24 C 1.36652 * 125.45799 * 180.02562 * 23 21 20 25 25 C 1.37475 * 113.29531 * 179.97438 * 24 23 21 26 26 C 1.33814 * 115.10326 * 0.02562 * 25 24 23 27 27 S 1.70613 * 110.95401 * 359.97438 * 26 25 24 28 28 H 1.08994 * 109.47337 * 300.00066 * 1 2 3 29 29 H 1.09004 * 109.47280 * 60.00222 * 1 2 3 30 30 H 1.09003 * 109.47014 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47710 * 295.00329 * 4 2 1 32 32 H 1.09006 * 109.47053 * 55.00558 * 4 2 1 33 33 H 0.97000 * 120.00410 * 0.02562 * 5 4 2 34 34 H 0.96998 * 119.99583 * 179.97438 * 9 8 6 35 35 H 1.09000 * 109.46977 * 270.00660 * 15 14 2 36 36 H 1.09005 * 109.47152 * 30.00273 * 15 14 2 37 37 H 1.08996 * 109.47532 * 150.00276 * 15 14 2 38 38 H 1.08994 * 109.46976 * 60.00002 * 18 16 14 39 39 H 1.09000 * 109.47241 * 300.00112 * 18 16 14 40 40 H 1.09007 * 109.47095 * 59.99964 * 19 18 16 41 41 H 1.09000 * 109.47192 * 300.00034 * 19 18 16 42 42 H 0.97002 * 119.99564 * 0.02562 * 20 19 18 43 43 H 1.07998 * 123.35183 * 0.27017 * 24 23 21 44 44 H 1.07999 * 122.44590 * 180.02562 * 25 24 23 45 45 H 1.07999 * 124.52176 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2492 5 7 3.5001 -0.8262 1.1906 6 6 4.1838 -1.4387 2.2068 7 1 3.6467 -1.8446 3.0513 8 6 5.5672 -1.5387 2.1509 9 7 6.2217 -1.0445 1.1215 10 14 6.4999 -2.3748 3.5368 11 1 5.5394 -2.8421 4.5685 12 1 7.2508 -3.5369 2.9976 13 1 7.4508 -1.4103 4.1458 14 7 2.0184 -0.6905 -1.1962 15 6 1.6646 -2.0931 -1.4281 16 6 2.7932 -0.0354 -2.0833 17 8 3.0858 1.1258 -1.8916 18 6 3.2960 -0.7460 -3.3135 19 6 4.1464 0.2155 -4.1460 20 7 4.6358 -0.4754 -5.3417 21 6 5.4107 0.1797 -6.2287 22 8 5.7035 1.3453 -6.0368 23 6 5.8998 -0.5114 -7.4253 24 6 6.6893 0.0423 -8.3935 25 6 7.0015 -0.8329 -9.4067 26 6 6.4864 -2.0608 -9.2751 27 16 5.5650 -2.1859 -7.8446 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.7516 -0.1582 2.1370 32 1 1.6054 -1.7198 1.2951 33 1 3.9825 -0.4621 0.4319 34 1 7.1884 -1.1141 1.0827 35 1 2.4159 -2.7375 -0.9717 36 1 0.6905 -2.3002 -0.9847 37 1 1.6240 -2.2851 -2.5002 38 1 2.4485 -1.0890 -3.9069 39 1 3.9018 -1.6022 -3.0165 40 1 4.9940 0.5581 -3.5523 41 1 3.5410 1.0719 -4.4430 42 1 4.4014 -1.4040 -5.4952 43 1 7.0374 1.0642 -8.3633 44 1 7.6176 -0.5500 -10.2474 45 1 6.6348 -2.8656 -9.9799 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698857935.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:18 Heat of formation + Delta-G solvation = -22.805096 kcal Electronic energy + Delta-G solvation = -26707.811309 eV Core-core repulsion = 22852.665492 eV Total energy + Delta-G solvation = -3855.145818 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.04983 -39.55853 -37.76159 -36.50655 -35.11812 -34.00342 -32.24902 -31.08410 -30.11293 -29.48138 -26.68207 -25.75122 -25.47587 -23.88410 -22.54433 -21.45039 -20.81643 -19.57994 -18.98661 -18.39577 -17.16154 -17.06596 -16.23206 -16.02663 -15.99761 -15.49109 -15.10407 -15.00775 -14.58928 -14.01208 -13.76161 -13.57699 -13.39654 -13.24726 -13.08001 -13.04772 -12.63650 -12.57624 -12.48341 -12.28897 -12.06495 -11.91746 -11.67006 -11.50467 -11.36763 -11.31845 -10.85354 -10.76632 -10.44299 -10.22512 -10.01065 -9.69411 -9.45046 -9.32414 -9.07019 -8.91991 -8.86662 -8.25528 -6.88825 -5.72429 -3.01876 0.21801 1.14592 1.54544 2.12419 2.83197 2.99211 3.07661 3.42311 3.44251 3.49347 3.51994 4.52500 4.60105 4.65228 4.82527 4.84236 4.98832 5.04848 5.16439 5.22254 5.32535 5.38953 5.46972 5.56113 5.61114 5.63285 5.69288 5.83597 5.93523 5.96148 6.00064 6.08476 6.09517 6.11681 6.18807 6.26977 6.37753 6.48418 6.74092 6.98526 7.28595 7.71097 7.72501 8.02905 8.45047 8.52609 9.56647 10.15376 10.50724 11.49595 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011090 B = 0.002601 C = 0.002292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2524.257846 B =10761.796918 C =12213.260429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.125 3.875 3 H 0.101 0.899 4 C 0.144 3.856 5 N -0.728 5.728 6 C -0.240 4.240 7 H 0.069 0.931 8 C -0.013 4.013 9 N -0.928 5.928 10 Si 0.905 3.095 11 H -0.281 1.281 12 H -0.292 1.292 13 H -0.292 1.292 14 N -0.597 5.597 15 C 0.079 3.921 16 C 0.523 3.477 17 O -0.536 6.536 18 C -0.151 4.151 19 C 0.135 3.865 20 N -0.725 5.725 21 C 0.589 3.411 22 O -0.523 6.523 23 C -0.261 4.261 24 C -0.058 4.058 25 C -0.149 4.149 26 C -0.232 4.232 27 S 0.199 5.801 28 H 0.067 0.933 29 H 0.054 0.946 30 H 0.057 0.943 31 H 0.027 0.973 32 H 0.020 0.980 33 H 0.386 0.614 34 H 0.254 0.746 35 H 0.066 0.934 36 H 0.069 0.931 37 H 0.063 0.937 38 H 0.095 0.905 39 H 0.104 0.896 40 H 0.086 0.914 41 H 0.079 0.921 42 H 0.396 0.604 43 H 0.155 0.845 44 H 0.146 0.854 45 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.991 -5.652 -21.445 23.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.022 3.978 3 H 0.119 0.881 4 C 0.016 3.984 5 N -0.372 5.372 6 C -0.372 4.372 7 H 0.087 0.913 8 C -0.209 4.209 9 N -0.576 5.576 10 Si 0.736 3.264 11 H -0.206 1.206 12 H -0.220 1.220 13 H -0.219 1.219 14 N -0.330 5.330 15 C -0.064 4.064 16 C 0.310 3.690 17 O -0.413 6.413 18 C -0.191 4.191 19 C 0.012 3.988 20 N -0.377 5.377 21 C 0.374 3.626 22 O -0.400 6.400 23 C -0.382 4.382 24 C -0.091 4.091 25 C -0.180 4.180 26 C -0.370 4.370 27 S 0.466 5.534 28 H 0.086 0.914 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.045 0.955 32 H 0.038 0.962 33 H 0.220 0.780 34 H 0.064 0.936 35 H 0.084 0.916 36 H 0.088 0.912 37 H 0.082 0.918 38 H 0.113 0.887 39 H 0.122 0.878 40 H 0.104 0.896 41 H 0.097 0.903 42 H 0.230 0.770 43 H 0.172 0.828 44 H 0.163 0.837 45 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -8.436 -5.455 -20.340 22.685 hybrid contribution 1.563 -0.012 -0.286 1.589 sum -6.873 -5.466 -20.625 22.417 Atomic orbital electron populations 1.22060 0.95245 1.01956 1.02089 1.21391 0.93174 0.98598 0.84670 0.88146 1.20995 0.87131 0.96691 0.93612 1.42306 0.99684 1.70085 1.25174 1.19245 0.89430 1.29307 0.99185 0.91275 1.24750 0.96448 1.01690 0.98035 1.69695 1.07080 1.50711 1.30136 0.86150 0.79958 0.78742 0.81508 1.20645 1.21960 1.21884 1.47635 1.50665 1.12214 1.22468 1.21745 1.01547 0.82308 1.00847 1.20089 0.77996 0.86829 0.84062 1.90729 1.56899 1.17039 1.76588 1.21808 1.01096 1.00510 0.95724 1.21129 0.99022 0.94287 0.84338 1.45843 1.52536 1.15413 1.23886 1.16898 0.78302 0.86015 0.81384 1.90872 1.57421 1.15828 1.75867 1.24705 1.11704 0.98998 1.02788 1.20846 0.95217 1.01474 0.91582 1.20070 1.03929 0.92794 1.01242 1.25323 1.05461 1.02502 1.03664 1.82994 1.47230 1.07690 1.15489 0.91391 0.92653 0.92400 0.95526 0.96245 0.77965 0.93605 0.91586 0.91222 0.91801 0.88716 0.87778 0.89580 0.90318 0.77031 0.82772 0.83663 0.81368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 9.17 37.16 0.34 -1.58 16 2 C 0.12 2.10 2.80 -67.94 -0.19 1.91 16 3 H 0.10 1.96 6.90 -51.93 -0.36 1.60 16 4 C 0.14 2.88 5.56 -4.04 -0.02 2.86 16 5 N -0.73 -18.69 5.43 -59.91 -0.33 -19.02 16 6 C -0.24 -6.78 9.99 -15.06 -0.15 -6.93 16 7 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 8 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 9 N -0.93 -28.63 13.06 55.49 0.72 -27.90 16 10 Si 0.91 22.63 29.55 -169.99 -5.02 17.61 16 11 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 12 H -0.29 -7.30 7.11 56.52 0.40 -6.89 16 13 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 14 N -0.60 -9.37 2.24 -173.94 -0.39 -9.76 16 15 C 0.08 0.95 9.40 59.85 0.56 1.51 16 16 C 0.52 8.91 7.38 -10.98 -0.08 8.83 16 17 O -0.54 -11.37 15.31 5.56 0.09 -11.28 16 18 C -0.15 -1.89 4.37 -27.88 -0.12 -2.02 16 19 C 0.14 1.94 4.96 -4.04 -0.02 1.92 16 20 N -0.73 -8.70 5.55 -61.64 -0.34 -9.04 16 21 C 0.59 8.25 7.78 -12.90 -0.10 8.15 16 22 O -0.52 -9.46 16.84 5.19 0.09 -9.37 16 23 C -0.26 -2.89 6.45 -36.79 -0.24 -3.13 16 24 C -0.06 -0.58 10.01 -40.43 -0.40 -0.99 16 25 C -0.15 -1.15 10.15 -41.41 -0.42 -1.57 16 26 C -0.23 -1.58 10.92 29.18 0.32 -1.26 16 27 S 0.20 1.51 22.16 -107.50 -2.38 -0.87 16 28 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.06 0.64 6.66 -51.93 -0.35 0.29 16 31 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.02 0.38 7.84 -51.93 -0.41 -0.03 16 33 H 0.39 10.76 7.06 -40.82 -0.29 10.48 16 34 H 0.25 7.60 8.31 -40.82 -0.34 7.26 16 35 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.07 0.73 6.43 -51.93 -0.33 0.39 16 37 H 0.06 0.56 6.44 -51.93 -0.33 0.22 16 38 H 0.09 0.84 7.40 -51.93 -0.38 0.46 16 39 H 0.10 1.27 8.11 -51.93 -0.42 0.85 16 40 H 0.09 1.52 8.10 -51.93 -0.42 1.10 16 41 H 0.08 1.19 8.10 -51.93 -0.42 0.77 16 42 H 0.40 3.50 7.59 -40.82 -0.31 3.19 16 43 H 0.15 1.53 8.06 -52.49 -0.42 1.11 16 44 H 0.15 0.78 8.06 -52.49 -0.42 0.36 16 45 H 0.17 0.71 8.06 -52.49 -0.42 0.29 16 LS Contribution 389.42 15.07 5.87 5.87 Total: -1.00 -36.91 389.42 -8.85 -45.76 By element: Atomic # 1 Polarization: 17.31 SS G_CDS: -6.53 Total: 10.78 kcal Atomic # 6 Polarization: 7.85 SS G_CDS: -0.62 Total: 7.23 kcal Atomic # 7 Polarization: -65.39 SS G_CDS: -0.33 Total: -65.72 kcal Atomic # 8 Polarization: -20.83 SS G_CDS: 0.17 Total: -20.65 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -5.02 Total: 17.61 kcal Atomic # 16 Polarization: 1.51 SS G_CDS: -2.38 Total: -0.87 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -36.91 -8.85 -45.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698857935.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.954 kcal (2) G-P(sol) polarization free energy of solvation -36.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds