Wall clock time and date at job start Sat Apr 11 2020 05:40:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08999 * 109.47058 * 2 1 4 4 C 1.52999 * 109.46675 * 240.00446 * 2 1 3 5 5 C 1.53008 * 109.46593 * 175.00232 * 4 2 1 6 6 N 1.46900 * 109.47142 * 179.97438 * 5 4 2 7 7 C 1.46889 * 111.00255 * 179.97438 * 6 5 4 8 8 C 1.50698 * 109.47581 * 180.02562 * 7 6 5 9 9 O 1.21293 * 119.99744 * 0.02562 * 8 7 6 10 10 N 1.34775 * 120.00621 * 180.02562 * 8 7 6 11 11 C 1.37100 * 120.00520 * 180.02562 * 10 8 7 12 12 H 1.07999 * 119.99341 * 359.97438 * 11 10 8 13 13 C 1.38949 * 120.00200 * 179.97438 * 11 10 8 14 14 N 1.31416 * 119.99811 * 359.97438 * 13 11 10 15 15 Si 1.86796 * 120.00016 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.46912 * 0.02562 * 15 13 11 17 17 H 1.48504 * 109.47257 * 119.99757 * 15 13 11 18 18 H 1.48502 * 109.47267 * 239.99935 * 15 13 11 19 19 N 1.46499 * 109.47014 * 120.00332 * 2 1 3 20 20 C 1.34777 * 119.99665 * 275.27733 * 19 2 1 21 21 O 1.21283 * 119.99990 * 359.71991 * 20 19 2 22 22 C 1.50698 * 119.99538 * 179.72653 * 20 19 2 23 23 C 1.50698 * 109.46944 * 179.97438 * 22 20 19 24 24 C 1.33391 * 125.20825 * 89.99534 * 23 22 20 25 25 C 1.38419 * 114.92755 * 179.97438 * 24 23 22 26 26 C 1.33394 * 114.91929 * 0.02562 * 25 24 23 27 27 S 1.75880 * 109.59171 * 359.75124 * 26 25 24 28 28 H 1.09000 * 109.47169 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47066 * 300.00185 * 1 2 3 30 30 H 1.09005 * 109.46722 * 59.99817 * 1 2 3 31 31 H 1.08998 * 109.47257 * 294.99692 * 4 2 1 32 32 H 1.08993 * 109.47436 * 55.00311 * 4 2 1 33 33 H 1.08998 * 109.46879 * 299.99693 * 5 4 2 34 34 H 1.09001 * 109.47112 * 59.99648 * 5 4 2 35 35 H 1.00906 * 110.99828 * 303.95714 * 6 5 4 36 36 H 1.08997 * 109.47713 * 300.00581 * 7 6 5 37 37 H 1.09010 * 109.47256 * 60.00442 * 7 6 5 38 38 H 0.97004 * 119.99508 * 359.97438 * 10 8 7 39 39 H 0.97001 * 119.99738 * 180.02562 * 14 13 11 40 40 H 0.97001 * 119.99790 * 94.99446 * 19 2 1 41 41 H 1.09003 * 109.47112 * 299.99065 * 22 20 19 42 42 H 1.08993 * 109.47916 * 59.99687 * 22 20 19 43 43 H 1.08010 * 122.53433 * 359.96361 * 24 23 22 44 44 H 1.08000 * 122.54234 * 180.02562 * 25 24 23 45 45 H 1.07998 * 125.20182 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5649 -0.6132 -1.3137 6 7 4.0546 -1.3061 -2.5129 7 6 5.5180 -1.2226 -2.6084 8 6 5.9825 -1.9424 -3.8482 9 8 5.1738 -2.4724 -4.5806 10 7 7.2964 -1.9973 -4.1434 11 6 7.7189 -2.6516 -5.2717 12 1 6.9987 -3.1235 -5.9237 13 6 9.0734 -2.7077 -5.5762 14 7 9.9495 -2.1330 -4.7830 15 14 9.6490 -3.5999 -7.1131 16 1 8.4746 -4.1566 -7.8314 17 1 10.3649 -2.6475 -7.9995 18 1 10.5651 -4.7042 -6.7305 19 7 2.0184 -0.6907 1.1961 20 6 2.1418 -0.0197 2.3585 21 8 1.8534 1.1571 2.4129 22 6 2.6382 -0.7317 3.5904 23 6 2.6843 0.2353 4.7452 24 6 1.6828 0.4660 5.5956 25 6 1.9569 1.3992 6.5805 26 6 3.1810 1.9269 6.5297 27 16 4.0691 1.2277 5.1822 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.7516 -1.7714 -1.2057 32 1 1.6054 -0.2616 -2.1370 33 1 3.8532 0.4370 -1.3573 34 1 3.9995 -1.0728 -0.4260 35 1 3.7451 -2.2665 -2.5273 36 1 5.8197 -0.1766 -2.6615 37 1 5.9666 -1.6859 -1.7295 38 1 7.9431 -1.5731 -3.5579 39 1 10.8951 -2.1718 -4.9958 40 1 2.2490 -1.6319 1.1525 41 1 1.9643 -1.5539 3.8313 42 1 3.6382 -1.1239 3.4053 43 1 0.7300 -0.0372 5.5211 44 1 1.2345 1.6789 7.3330 45 1 3.5689 2.6667 7.2142 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699076811.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:21 Heat of formation + Delta-G solvation = -49.159998 kcal Electronic energy + Delta-G solvation = -25562.251754 eV Core-core repulsion = 21705.963102 eV Total energy + Delta-G solvation = -3856.288652 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.21756 -38.36568 -38.03661 -36.89271 -34.99786 -33.83591 -32.87784 -31.47686 -31.18753 -29.28358 -27.41618 -26.23897 -24.21705 -23.73405 -22.34463 -21.41664 -20.76487 -19.54794 -19.24180 -17.91006 -17.57584 -17.41028 -16.41953 -16.17045 -15.89121 -15.55013 -15.20417 -14.71389 -14.47684 -14.24360 -13.98067 -13.83914 -13.62399 -13.40124 -13.18042 -13.09212 -12.93095 -12.72776 -12.60001 -12.26597 -12.20874 -11.90578 -11.69932 -11.52926 -11.33414 -11.15874 -11.07095 -11.01007 -10.96971 -10.35065 -10.23346 -10.14662 -9.53010 -9.35533 -8.95211 -8.70429 -8.47500 -8.07670 -7.96907 -6.42700 -3.83595 0.69561 1.36067 1.73387 2.37392 2.42979 2.97874 3.15663 3.26284 3.33548 3.89551 4.02758 4.22220 4.24909 4.56935 4.69451 4.77055 4.79060 4.84256 4.96786 4.97587 5.16512 5.22250 5.26003 5.26977 5.28796 5.34841 5.49827 5.51772 5.72897 5.76788 5.79922 5.89206 5.93757 5.98434 5.99042 6.05554 6.18497 6.25879 6.29111 7.18853 7.21232 7.54535 7.64175 7.96092 8.05615 8.60181 9.16962 9.53356 10.04640 10.75102 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.015509 B = 0.001772 C = 0.001618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1805.000498 B =15796.382545 C =17296.752237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.143 3.857 3 H 0.090 0.910 4 C -0.125 4.125 5 C 0.060 3.940 6 N -0.669 5.669 7 C 0.051 3.949 8 C 0.441 3.559 9 O -0.584 6.584 10 N -0.564 5.564 11 C -0.299 4.299 12 H 0.104 0.896 13 C 0.021 3.979 14 N -0.902 5.902 15 Si 0.930 3.070 16 H -0.268 1.268 17 H -0.281 1.281 18 H -0.282 1.282 19 N -0.725 5.725 20 C 0.514 3.486 21 O -0.527 6.527 22 C -0.073 4.073 23 C -0.159 4.159 24 C -0.129 4.129 25 C -0.134 4.134 26 C -0.215 4.215 27 S 0.112 5.888 28 H 0.056 0.944 29 H 0.059 0.941 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.091 0.909 33 H 0.071 0.929 34 H 0.025 0.975 35 H 0.348 0.652 36 H 0.085 0.915 37 H 0.042 0.958 38 H 0.392 0.608 39 H 0.271 0.729 40 H 0.400 0.600 41 H 0.112 0.888 42 H 0.105 0.895 43 H 0.137 0.863 44 H 0.138 0.862 45 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.525 4.397 23.456 28.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.039 3.961 3 H 0.108 0.892 4 C -0.163 4.163 5 C -0.070 4.070 6 N -0.302 5.302 7 C -0.082 4.082 8 C 0.226 3.774 9 O -0.468 6.468 10 N -0.201 5.201 11 C -0.429 4.429 12 H 0.122 0.878 13 C -0.180 4.180 14 N -0.543 5.543 15 Si 0.757 3.243 16 H -0.192 1.192 17 H -0.207 1.207 18 H -0.208 1.208 19 N -0.378 5.378 20 C 0.299 3.701 21 O -0.402 6.402 22 C -0.115 4.115 23 C -0.277 4.277 24 C -0.159 4.159 25 C -0.165 4.165 26 C -0.351 4.351 27 S 0.376 5.624 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.109 0.891 33 H 0.089 0.911 34 H 0.043 0.957 35 H 0.167 0.833 36 H 0.104 0.896 37 H 0.060 0.940 38 H 0.225 0.775 39 H 0.081 0.919 40 H 0.234 0.766 41 H 0.130 0.870 42 H 0.123 0.877 43 H 0.154 0.846 44 H 0.156 0.844 45 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -14.700 5.655 21.978 27.039 hybrid contribution -0.179 -1.326 0.922 1.625 sum -14.879 4.328 22.900 27.650 Atomic orbital electron populations 1.22154 0.95077 1.02136 1.02620 1.20993 0.94008 0.97722 0.83420 0.89200 1.21881 0.95851 1.01248 0.97315 1.21964 0.94266 0.99809 0.90939 1.60044 1.09833 1.21640 1.38660 1.21662 0.88362 1.01302 0.96835 1.19815 0.83333 0.85911 0.88344 1.90520 1.53330 1.50585 1.52343 1.41878 1.05430 1.48905 1.23853 1.19761 0.91993 1.30141 1.00980 0.87847 1.25274 0.95636 0.97842 0.99265 1.69624 1.02497 1.44292 1.37885 0.85792 0.78752 0.78826 0.80924 1.19207 1.20731 1.20775 1.46140 1.67815 1.14161 1.09637 1.20450 0.77869 0.87529 0.84273 1.90740 1.48951 1.15711 1.84836 1.20173 1.04371 0.96971 0.89950 1.23774 0.98190 1.04246 1.01467 1.20042 0.99508 1.00488 0.95906 1.20113 0.96969 0.98681 1.00729 1.25620 0.98894 1.07148 1.03407 1.84336 1.15665 1.37033 1.25322 0.92448 0.92228 0.91361 0.91313 0.89092 0.91099 0.95666 0.83287 0.89643 0.93987 0.77462 0.91914 0.76569 0.86993 0.87679 0.84571 0.84386 0.81955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.31 9.48 37.16 0.35 -0.96 16 2 C 0.14 1.26 2.57 -67.93 -0.17 1.08 16 3 H 0.09 0.97 7.58 -51.93 -0.39 0.58 16 4 C -0.12 -1.14 5.01 -26.73 -0.13 -1.28 16 5 C 0.06 0.69 5.57 -3.82 -0.02 0.67 16 6 N -0.67 -10.44 6.12 -115.06 -0.70 -11.15 16 7 C 0.05 0.90 6.17 -4.98 -0.03 0.87 16 8 C 0.44 10.39 7.82 -10.99 -0.09 10.31 16 9 O -0.58 -15.81 15.78 5.55 0.09 -15.72 16 10 N -0.56 -14.32 5.29 -10.96 -0.06 -14.38 16 11 C -0.30 -8.36 9.68 -14.93 -0.14 -8.50 16 12 H 0.10 3.03 7.16 -52.49 -0.38 2.66 16 13 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 14 N -0.90 -24.55 13.05 55.50 0.72 -23.82 16 15 Si 0.93 21.02 29.55 -169.99 -5.02 15.99 16 16 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 17 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 18 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 19 N -0.72 -5.56 4.53 -53.80 -0.24 -5.80 16 20 C 0.51 4.89 7.78 -10.99 -0.09 4.81 16 21 O -0.53 -7.20 15.70 5.55 0.09 -7.12 16 22 C -0.07 -0.50 6.19 -29.04 -0.18 -0.68 16 23 C -0.16 -1.42 5.00 -36.00 -0.18 -1.60 16 24 C -0.13 -1.10 10.05 -41.21 -0.41 -1.52 16 25 C -0.13 -1.08 10.18 -41.21 -0.42 -1.50 16 26 C -0.21 -1.74 11.23 29.04 0.33 -1.42 16 27 S 0.11 1.03 23.33 -107.50 -2.51 -1.48 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.03 0.27 7.75 -51.93 -0.40 -0.14 16 35 H 0.35 5.48 8.43 -39.29 -0.33 5.15 16 36 H 0.09 1.42 8.14 -51.93 -0.42 0.99 16 37 H 0.04 0.66 8.14 -51.92 -0.42 0.24 16 38 H 0.39 9.52 7.90 -40.82 -0.32 9.20 16 39 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 40 H 0.40 2.14 8.60 -40.82 -0.35 1.79 16 41 H 0.11 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.14 0.94 8.06 -52.48 -0.42 0.52 16 44 H 0.14 0.81 8.06 -52.49 -0.42 0.39 16 45 H 0.16 0.95 8.06 -52.49 -0.42 0.53 16 LS Contribution 398.25 15.07 6.00 6.00 Total: -1.00 -34.34 398.25 -9.73 -44.07 By element: Atomic # 1 Polarization: 19.47 SS G_CDS: -6.81 Total: 12.66 kcal Atomic # 6 Polarization: 2.04 SS G_CDS: -1.29 Total: 0.75 kcal Atomic # 7 Polarization: -54.87 SS G_CDS: -0.28 Total: -55.15 kcal Atomic # 8 Polarization: -23.01 SS G_CDS: 0.17 Total: -22.84 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 15.99 kcal Atomic # 16 Polarization: 1.03 SS G_CDS: -2.51 Total: -1.48 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -34.34 -9.73 -44.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699076811.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.089 kcal (2) G-P(sol) polarization free energy of solvation -34.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds