Wall clock time and date at job start Sat Apr 11 2020 05:40:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08999 * 109.47058 * 2 1 4 4 C 1.52999 * 109.46675 * 240.00446 * 2 1 3 5 5 C 1.53008 * 109.46593 * 175.00232 * 4 2 1 6 6 N 1.46900 * 109.47142 * 179.97438 * 5 4 2 7 7 C 1.46889 * 111.00255 * 179.97438 * 6 5 4 8 8 C 1.50698 * 109.47581 * 180.02562 * 7 6 5 9 9 O 1.21293 * 119.99744 * 0.02562 * 8 7 6 10 10 N 1.34775 * 120.00621 * 180.02562 * 8 7 6 11 11 C 1.37100 * 120.00520 * 180.02562 * 10 8 7 12 12 H 1.07999 * 119.99341 * 359.97438 * 11 10 8 13 13 C 1.38949 * 120.00200 * 179.97438 * 11 10 8 14 14 N 1.31416 * 119.99811 * 359.97438 * 13 11 10 15 15 Si 1.86796 * 120.00016 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.46912 * 0.02562 * 15 13 11 17 17 H 1.48504 * 109.47257 * 119.99757 * 15 13 11 18 18 H 1.48502 * 109.47267 * 239.99935 * 15 13 11 19 19 N 1.46499 * 109.47014 * 120.00332 * 2 1 3 20 20 C 1.34777 * 119.99665 * 275.27733 * 19 2 1 21 21 O 1.21283 * 119.99990 * 359.71991 * 20 19 2 22 22 C 1.50698 * 119.99538 * 179.72653 * 20 19 2 23 23 C 1.50698 * 109.46944 * 179.97438 * 22 20 19 24 24 C 1.33391 * 125.20825 * 89.99534 * 23 22 20 25 25 C 1.38419 * 114.92755 * 179.97438 * 24 23 22 26 26 C 1.33394 * 114.91929 * 0.02562 * 25 24 23 27 27 S 1.75880 * 109.59171 * 359.75124 * 26 25 24 28 28 H 1.09000 * 109.47169 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47066 * 300.00185 * 1 2 3 30 30 H 1.09005 * 109.46722 * 59.99817 * 1 2 3 31 31 H 1.08998 * 109.47257 * 294.99692 * 4 2 1 32 32 H 1.08993 * 109.47436 * 55.00311 * 4 2 1 33 33 H 1.08998 * 109.46879 * 299.99693 * 5 4 2 34 34 H 1.09001 * 109.47112 * 59.99648 * 5 4 2 35 35 H 1.00906 * 110.99828 * 303.95714 * 6 5 4 36 36 H 1.08997 * 109.47713 * 300.00581 * 7 6 5 37 37 H 1.09010 * 109.47256 * 60.00442 * 7 6 5 38 38 H 0.97004 * 119.99508 * 359.97438 * 10 8 7 39 39 H 0.97001 * 119.99738 * 180.02562 * 14 13 11 40 40 H 0.97001 * 119.99790 * 94.99446 * 19 2 1 41 41 H 1.09003 * 109.47112 * 299.99065 * 22 20 19 42 42 H 1.08993 * 109.47916 * 59.99687 * 22 20 19 43 43 H 1.08010 * 122.53433 * 359.96361 * 24 23 22 44 44 H 1.08000 * 122.54234 * 180.02562 * 25 24 23 45 45 H 1.07998 * 125.20182 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5649 -0.6132 -1.3137 6 7 4.0546 -1.3061 -2.5129 7 6 5.5180 -1.2226 -2.6084 8 6 5.9825 -1.9424 -3.8482 9 8 5.1738 -2.4724 -4.5806 10 7 7.2964 -1.9973 -4.1434 11 6 7.7189 -2.6516 -5.2717 12 1 6.9987 -3.1235 -5.9237 13 6 9.0734 -2.7077 -5.5762 14 7 9.9495 -2.1330 -4.7830 15 14 9.6490 -3.5999 -7.1131 16 1 8.4746 -4.1566 -7.8314 17 1 10.3649 -2.6475 -7.9995 18 1 10.5651 -4.7042 -6.7305 19 7 2.0184 -0.6907 1.1961 20 6 2.1418 -0.0197 2.3585 21 8 1.8534 1.1571 2.4129 22 6 2.6382 -0.7317 3.5904 23 6 2.6843 0.2353 4.7452 24 6 1.6828 0.4660 5.5956 25 6 1.9569 1.3992 6.5805 26 6 3.1810 1.9269 6.5297 27 16 4.0691 1.2277 5.1822 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.7516 -1.7714 -1.2057 32 1 1.6054 -0.2616 -2.1370 33 1 3.8532 0.4370 -1.3573 34 1 3.9995 -1.0728 -0.4260 35 1 3.7451 -2.2665 -2.5273 36 1 5.8197 -0.1766 -2.6615 37 1 5.9666 -1.6859 -1.7295 38 1 7.9431 -1.5731 -3.5579 39 1 10.8951 -2.1718 -4.9958 40 1 2.2490 -1.6319 1.1525 41 1 1.9643 -1.5539 3.8313 42 1 3.6382 -1.1239 3.4053 43 1 0.7300 -0.0372 5.5211 44 1 1.2345 1.6789 7.3330 45 1 3.5689 2.6667 7.2142 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699076811.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:20 Heat of formation + Delta-G solvation = -74.085351 kcal Electronic energy + Delta-G solvation = -25563.332599 eV Core-core repulsion = 21705.963102 eV Total energy + Delta-G solvation = -3857.369497 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.95758 -40.15524 -38.69877 -37.83881 -36.26935 -35.67919 -33.57111 -33.26917 -32.17488 -30.30260 -28.01524 -27.77767 -25.80267 -24.44704 -23.31353 -22.19315 -21.49815 -21.05338 -20.13862 -19.91011 -18.25665 -18.09281 -17.83768 -17.24649 -16.82777 -16.51665 -16.47943 -15.98643 -15.93803 -15.33524 -15.21182 -15.13483 -14.76474 -14.35224 -13.99999 -13.82783 -13.78861 -13.56359 -13.50198 -13.43870 -13.32389 -13.15355 -12.91569 -12.78545 -12.45000 -12.41336 -12.24459 -12.12112 -12.03503 -11.77961 -11.64307 -11.51622 -10.93379 -10.36686 -10.07020 -10.02094 -9.56944 -9.37123 -9.31500 -8.47221 -5.96132 0.07567 0.74517 1.11545 1.36797 1.42268 1.56568 1.66971 1.81879 2.04318 2.28993 2.33725 2.89074 3.20058 3.49589 3.64320 3.88061 3.99263 4.08077 4.21863 4.23194 4.27660 4.31217 4.44545 4.47117 4.51854 4.54393 4.62792 4.69090 4.71325 4.76012 4.83916 4.96842 5.11876 5.20657 5.20870 5.32690 5.38361 5.40959 5.58559 5.60679 5.88550 6.09833 6.44279 6.59232 6.59526 7.12044 7.30055 7.55534 8.10462 8.70391 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.015509 B = 0.001772 C = 0.001618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1805.000498 B =15796.382545 C =17296.752237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.149 3.851 3 H 0.067 0.933 4 C -0.113 4.113 5 C 0.063 3.937 6 N -0.683 5.683 7 C 0.065 3.935 8 C 0.438 3.562 9 O -0.622 6.622 10 N -0.574 5.574 11 C -0.334 4.334 12 H 0.080 0.920 13 C -0.014 4.014 14 N -0.921 5.921 15 Si 0.994 3.006 16 H -0.273 1.273 17 H -0.272 1.272 18 H -0.270 1.270 19 N -0.713 5.713 20 C 0.513 3.487 21 O -0.574 6.574 22 C -0.069 4.069 23 C -0.170 4.170 24 C -0.139 4.139 25 C -0.143 4.143 26 C -0.219 4.219 27 S 0.073 5.927 28 H 0.071 0.929 29 H 0.044 0.956 30 H 0.071 0.929 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.063 0.937 34 H 0.042 0.958 35 H 0.347 0.653 36 H 0.098 0.902 37 H 0.067 0.933 38 H 0.396 0.604 39 H 0.278 0.722 40 H 0.415 0.585 41 H 0.143 0.857 42 H 0.121 0.879 43 H 0.151 0.849 44 H 0.159 0.841 45 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.888 3.540 24.340 29.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.044 3.956 3 H 0.085 0.915 4 C -0.151 4.151 5 C -0.066 4.066 6 N -0.316 5.316 7 C -0.067 4.067 8 C 0.225 3.775 9 O -0.509 6.509 10 N -0.211 5.211 11 C -0.463 4.463 12 H 0.098 0.902 13 C -0.214 4.214 14 N -0.562 5.562 15 Si 0.818 3.182 16 H -0.197 1.197 17 H -0.197 1.197 18 H -0.195 1.195 19 N -0.366 5.366 20 C 0.299 3.701 21 O -0.453 6.453 22 C -0.110 4.110 23 C -0.287 4.287 24 C -0.169 4.169 25 C -0.173 4.173 26 C -0.354 4.354 27 S 0.337 5.663 28 H 0.090 0.910 29 H 0.063 0.937 30 H 0.090 0.910 31 H 0.103 0.897 32 H 0.102 0.898 33 H 0.082 0.918 34 H 0.060 0.940 35 H 0.166 0.834 36 H 0.116 0.884 37 H 0.085 0.915 38 H 0.230 0.770 39 H 0.087 0.913 40 H 0.251 0.749 41 H 0.161 0.839 42 H 0.139 0.861 43 H 0.169 0.831 44 H 0.176 0.824 45 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -15.055 4.782 22.887 27.809 hybrid contribution -0.130 -1.028 0.686 1.243 sum -15.185 3.753 23.573 28.290 Atomic orbital electron populations 1.22089 0.94306 1.02886 1.02098 1.20826 0.94496 0.96607 0.83645 0.91476 1.21762 0.94040 1.02186 0.97122 1.22008 0.95722 0.98938 0.89916 1.60028 1.08481 1.21917 1.41179 1.21512 0.89854 1.01096 0.94282 1.20876 0.82332 0.84808 0.89468 1.90487 1.54138 1.52076 1.54167 1.41955 1.06351 1.49232 1.23569 1.19720 0.92367 1.31963 1.02278 0.90225 1.26064 0.95192 0.98120 1.02012 1.69683 1.02939 1.44535 1.39020 0.84852 0.78060 0.77991 0.77315 1.19712 1.19727 1.19515 1.46040 1.66990 1.14760 1.08853 1.20901 0.77008 0.87014 0.85164 1.90724 1.51164 1.17821 1.85587 1.20269 1.05911 0.96938 0.87916 1.24059 0.97843 1.04590 1.02244 1.20362 1.00034 1.00622 0.95911 1.20442 0.97349 0.98421 1.01095 1.25896 0.98865 1.07490 1.03165 1.84406 1.17051 1.38204 1.26652 0.90998 0.93700 0.90963 0.89699 0.89764 0.91827 0.93979 0.83393 0.88425 0.91480 0.77010 0.91301 0.74850 0.83949 0.86070 0.83095 0.82355 0.80153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.31 9.48 71.98 0.68 -1.62 16 2 C 0.15 2.43 2.57 44.99 0.12 2.54 16 3 H 0.07 1.44 7.58 -2.39 -0.02 1.42 16 4 C -0.11 -1.86 5.01 30.60 0.15 -1.70 16 5 C 0.06 1.33 5.57 86.31 0.48 1.81 16 6 N -0.68 -20.30 6.12 -517.94 -3.17 -23.47 16 7 C 0.07 2.19 6.17 85.56 0.53 2.72 16 8 C 0.44 20.68 7.82 87.66 0.69 21.36 16 9 O -0.62 -34.18 15.78 -3.07 -0.05 -34.23 16 10 N -0.57 -29.42 5.29 -306.99 -1.62 -31.04 16 11 C -0.33 -18.95 9.68 84.04 0.81 -18.13 16 12 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16 13 C -0.01 -0.76 5.50 84.93 0.47 -0.29 16 14 N -0.92 -49.66 13.05 21.66 0.28 -49.37 16 15 Si 0.99 42.79 29.55 68.60 2.03 44.82 16 16 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 17 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 18 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 19 N -0.71 -9.53 4.53 -442.52 -2.00 -11.53 16 20 C 0.51 9.08 7.78 87.66 0.68 9.77 16 21 O -0.57 -15.63 15.70 -3.04 -0.05 -15.68 16 22 C -0.07 -0.81 6.19 29.10 0.18 -0.63 16 23 C -0.17 -2.86 5.00 24.59 0.12 -2.74 16 24 C -0.14 -2.20 10.05 21.22 0.21 -1.99 16 25 C -0.14 -2.13 10.18 21.22 0.22 -1.91 16 26 C -0.22 -3.40 11.23 66.72 0.75 -2.65 16 27 S 0.07 1.33 23.33 -56.49 -1.32 0.01 16 28 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.07 1.01 8.14 -2.38 -0.02 0.99 16 31 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.04 0.77 7.75 -2.39 -0.02 0.75 16 35 H 0.35 10.43 8.43 -89.69 -0.76 9.67 16 36 H 0.10 3.08 8.14 -2.39 -0.02 3.06 16 37 H 0.07 1.95 8.14 -2.38 -0.02 1.93 16 38 H 0.40 19.30 7.90 -92.71 -0.73 18.57 16 39 H 0.28 13.96 8.31 -92.71 -0.77 13.19 16 40 H 0.41 3.19 8.60 -92.71 -0.80 2.39 16 41 H 0.14 0.78 8.14 -2.39 -0.02 0.76 16 42 H 0.12 1.04 8.14 -2.39 -0.02 1.02 16 43 H 0.15 1.83 8.06 -2.91 -0.02 1.80 16 44 H 0.16 1.59 8.06 -2.91 -0.02 1.57 16 45 H 0.18 1.94 8.06 -2.91 -0.02 1.91 16 Total: -1.00 -75.34 398.25 -1.07 -76.41 By element: Atomic # 1 Polarization: 38.81 SS G_CDS: -1.26 Total: 37.55 kcal Atomic # 6 Polarization: 0.43 SS G_CDS: 6.09 Total: 6.52 kcal Atomic # 7 Polarization: -108.90 SS G_CDS: -6.52 Total: -115.42 kcal Atomic # 8 Polarization: -49.81 SS G_CDS: -0.10 Total: -49.90 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.82 kcal Atomic # 16 Polarization: 1.33 SS G_CDS: -1.32 Total: 0.01 kcal Total: -75.34 -1.07 -76.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699076811.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.328 kcal (2) G-P(sol) polarization free energy of solvation -75.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds