Wall clock time and date at job start Sat Apr 11 2020 05:40:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.52997 * 109.46817 * 119.99820 * 2 1 3 5 5 C 1.53004 * 109.47236 * 184.99998 * 4 2 1 6 6 N 1.46901 * 109.47251 * 180.02562 * 5 4 2 7 7 C 1.46904 * 110.99756 * 180.02562 * 6 5 4 8 8 C 1.50702 * 109.46621 * 179.97438 * 7 6 5 9 9 O 1.21292 * 120.00351 * 359.97438 * 8 7 6 10 10 N 1.34777 * 119.99570 * 179.97438 * 8 7 6 11 11 C 1.37099 * 120.00191 * 180.02562 * 10 8 7 12 12 H 1.08007 * 119.99299 * 359.97438 * 11 10 8 13 13 C 1.38942 * 120.00151 * 179.97438 * 11 10 8 14 14 N 1.31406 * 120.00423 * 0.02562 * 13 11 10 15 15 Si 1.86806 * 119.99797 * 179.97438 * 13 11 10 16 16 H 1.48496 * 109.47380 * 59.99916 * 15 13 11 17 17 H 1.48498 * 109.47198 * 180.02562 * 15 13 11 18 18 H 1.48499 * 109.47005 * 300.00008 * 15 13 11 19 19 N 1.46505 * 109.47411 * 239.99921 * 2 1 3 20 20 C 1.34769 * 119.99686 * 84.99974 * 19 2 1 21 21 O 1.21275 * 120.00678 * 0.02562 * 20 19 2 22 22 C 1.50701 * 119.99690 * 179.97438 * 20 19 2 23 23 C 1.50704 * 109.47153 * 179.97438 * 22 20 19 24 24 C 1.33386 * 125.19734 * 90.00447 * 23 22 20 25 25 C 1.38431 * 114.92111 * 179.97438 * 24 23 22 26 26 C 1.33396 * 114.91615 * 359.97438 * 25 24 23 27 27 S 1.75882 * 125.20518 * 269.69767 * 23 22 20 28 28 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 29 29 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 30 30 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47630 * 305.00128 * 4 2 1 32 32 H 1.09004 * 109.47346 * 65.00258 * 4 2 1 33 33 H 1.09001 * 109.46917 * 300.00567 * 5 4 2 34 34 H 1.09004 * 109.46741 * 59.99889 * 5 4 2 35 35 H 1.00898 * 111.00315 * 56.04456 * 6 5 4 36 36 H 1.08996 * 109.46840 * 299.99325 * 7 6 5 37 37 H 1.08996 * 109.47271 * 59.99446 * 7 6 5 38 38 H 0.97008 * 120.00259 * 359.97438 * 10 8 7 39 39 H 0.97000 * 120.00305 * 180.02562 * 14 13 11 40 40 H 0.97000 * 119.99634 * 265.00306 * 19 2 1 41 41 H 1.08996 * 109.47353 * 300.00507 * 22 20 19 42 42 H 1.09006 * 109.47337 * 60.00072 * 22 20 19 43 43 H 1.07998 * 122.54661 * 359.95255 * 24 23 22 44 44 H 1.07988 * 122.54275 * 180.02562 * 25 24 23 45 45 H 1.07996 * 125.20115 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5648 -0.6133 1.3138 6 7 4.0544 -1.3063 2.5130 7 6 5.5180 -1.2227 2.6085 8 6 5.9823 -1.9426 3.8484 9 8 5.1735 -2.4727 4.5807 10 7 7.2962 -1.9974 4.1436 11 6 7.7187 -2.6528 5.2712 12 1 6.9985 -3.1247 5.9232 13 6 9.0733 -2.7097 5.5752 14 7 9.9494 -2.1351 4.7822 15 14 9.6488 -3.6020 7.1121 16 1 9.2370 -5.0269 7.0408 17 1 11.1283 -3.5181 7.2084 18 1 9.0387 -2.9698 8.3093 19 7 2.0184 -0.6906 -1.1962 20 6 2.1472 -0.0183 -2.3570 21 8 1.8592 1.1585 -2.4115 22 6 2.6501 -0.7285 -3.5873 23 6 2.7001 0.2396 -4.7412 24 6 3.7492 0.9976 -5.0639 25 6 3.5627 1.8124 -6.1674 26 6 2.3622 1.7156 -6.7409 27 16 1.3869 0.5373 -5.8727 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6053 -0.2617 2.1370 32 1 1.7516 -1.7715 1.2056 33 1 3.9994 -1.0728 0.4261 34 1 3.8531 0.4370 1.3574 35 1 3.7450 -2.2666 2.5274 36 1 5.9664 -1.6859 1.7296 37 1 5.8195 -0.1767 2.6617 38 1 7.9430 -1.5738 3.5577 39 1 10.8951 -2.1752 4.9942 40 1 2.2491 -1.6318 -1.1525 41 1 3.6494 -1.1204 -3.3977 42 1 1.9779 -1.5509 -3.8325 43 1 4.6739 0.9775 -4.5065 44 1 4.3310 2.4754 -6.5364 45 1 2.0399 2.2726 -7.6082 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699076815.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:23 Heat of formation + Delta-G solvation = -49.115812 kcal Electronic energy + Delta-G solvation = -25566.175567 eV Core-core repulsion = 21709.888831 eV Total energy + Delta-G solvation = -3856.286736 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.21786 -38.36579 -38.03555 -36.89328 -34.99851 -33.83762 -32.87806 -31.47772 -31.19035 -29.28270 -27.41875 -26.23824 -24.21302 -23.73024 -22.34498 -21.41357 -20.76902 -19.55207 -19.24260 -17.91099 -17.56466 -17.40512 -16.46222 -16.20424 -15.80148 -15.48275 -15.32453 -14.71013 -14.48095 -14.22671 -13.96788 -13.85775 -13.62696 -13.37265 -13.24806 -13.06833 -12.90394 -12.70533 -12.62411 -12.26447 -12.20789 -11.90518 -11.69702 -11.52953 -11.33175 -11.15715 -11.05678 -11.03801 -10.95941 -10.45079 -10.22350 -10.14644 -9.51148 -9.35480 -8.95381 -8.71586 -8.47681 -8.07870 -7.97123 -6.42596 -3.83646 0.68897 1.34416 1.70957 2.37617 2.43824 2.98033 3.19390 3.25182 3.29520 3.89470 4.02658 4.22352 4.24800 4.56120 4.69115 4.77444 4.79578 4.82896 4.96588 5.00740 5.16409 5.22280 5.26266 5.27861 5.30424 5.35107 5.49740 5.51894 5.72769 5.76549 5.81543 5.89361 5.93608 5.98805 5.99134 6.05581 6.19233 6.25640 6.29192 7.18629 7.21292 7.53990 7.63976 7.96171 8.05024 8.60143 9.16670 9.53119 10.04549 10.75034 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.017071 B = 0.001708 C = 0.001581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1639.769682 B =16392.860240 C =17708.938791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.143 3.857 3 H 0.090 0.910 4 C -0.125 4.125 5 C 0.060 3.940 6 N -0.670 5.670 7 C 0.051 3.949 8 C 0.440 3.560 9 O -0.584 6.584 10 N -0.563 5.563 11 C -0.301 4.301 12 H 0.103 0.897 13 C 0.022 3.978 14 N -0.902 5.902 15 Si 0.931 3.069 16 H -0.274 1.274 17 H -0.284 1.284 18 H -0.273 1.273 19 N -0.725 5.725 20 C 0.514 3.486 21 O -0.527 6.527 22 C -0.073 4.073 23 C -0.158 4.158 24 C -0.127 4.127 25 C -0.132 4.132 26 C -0.214 4.214 27 S 0.103 5.897 28 H 0.068 0.932 29 H 0.059 0.941 30 H 0.056 0.944 31 H 0.091 0.909 32 H 0.068 0.932 33 H 0.025 0.975 34 H 0.070 0.930 35 H 0.348 0.652 36 H 0.042 0.958 37 H 0.085 0.915 38 H 0.392 0.608 39 H 0.272 0.728 40 H 0.400 0.600 41 H 0.113 0.887 42 H 0.104 0.896 43 H 0.139 0.861 44 H 0.140 0.860 45 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.412 4.425 -23.446 28.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.039 3.961 3 H 0.108 0.892 4 C -0.163 4.163 5 C -0.070 4.070 6 N -0.302 5.302 7 C -0.081 4.081 8 C 0.226 3.774 9 O -0.468 6.468 10 N -0.200 5.200 11 C -0.430 4.430 12 H 0.120 0.880 13 C -0.179 4.179 14 N -0.543 5.543 15 Si 0.758 3.242 16 H -0.199 1.199 17 H -0.210 1.210 18 H -0.199 1.199 19 N -0.378 5.378 20 C 0.299 3.701 21 O -0.402 6.402 22 C -0.115 4.115 23 C -0.275 4.275 24 C -0.157 4.157 25 C -0.162 4.162 26 C -0.350 4.350 27 S 0.367 5.633 28 H 0.087 0.913 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.109 0.891 32 H 0.087 0.913 33 H 0.043 0.957 34 H 0.089 0.911 35 H 0.167 0.833 36 H 0.060 0.940 37 H 0.103 0.897 38 H 0.225 0.775 39 H 0.082 0.918 40 H 0.234 0.766 41 H 0.132 0.868 42 H 0.122 0.878 43 H 0.156 0.844 44 H 0.157 0.843 45 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -17.520 4.930 -22.730 29.119 hybrid contribution 2.681 -0.596 -0.168 2.752 sum -14.839 4.334 -22.898 27.628 Atomic orbital electron populations 1.22154 0.95075 1.02151 1.02630 1.20993 0.94017 0.97715 0.83411 0.89196 1.21883 0.95850 1.01253 0.97320 1.21962 0.94266 0.99793 0.90938 1.60046 1.09833 1.21645 1.38664 1.21661 0.88361 1.01287 0.96832 1.19813 0.83333 0.85943 0.88356 1.90519 1.53326 1.50608 1.52350 1.41865 1.05423 1.48878 1.23835 1.19660 0.91966 1.30293 1.01095 0.87960 1.25265 0.95622 0.97807 0.99242 1.69601 1.02569 1.44182 1.37966 0.85909 0.77243 0.79730 0.81279 1.19921 1.20976 1.19868 1.46140 1.67775 1.14106 1.09733 1.20445 0.77864 0.87518 0.84291 1.90738 1.49039 1.15699 1.84759 1.20177 1.04638 0.96830 0.89813 1.23751 0.97502 1.04800 1.01496 1.20099 0.99840 0.97355 0.98446 1.20147 0.97623 1.01519 0.96960 1.25591 0.98094 1.05376 1.05930 1.84174 1.17658 1.38610 1.22908 0.91344 0.92226 0.92443 0.89095 0.91313 0.95661 0.91113 0.83282 0.93995 0.89656 0.77458 0.91804 0.76569 0.86849 0.87816 0.84356 0.84268 0.81968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.33 9.48 37.16 0.35 -0.97 16 2 C 0.14 1.26 2.57 -67.93 -0.17 1.08 16 3 H 0.09 0.97 7.58 -51.93 -0.39 0.58 16 4 C -0.12 -1.14 5.01 -26.73 -0.13 -1.28 16 5 C 0.06 0.69 5.57 -3.82 -0.02 0.67 16 6 N -0.67 -10.40 6.12 -115.05 -0.70 -11.11 16 7 C 0.05 0.90 6.17 -4.97 -0.03 0.86 16 8 C 0.44 10.36 7.82 -10.98 -0.09 10.28 16 9 O -0.58 -15.79 15.78 5.55 0.09 -15.71 16 10 N -0.56 -14.27 5.29 -10.96 -0.06 -14.33 16 11 C -0.30 -8.38 9.68 -14.94 -0.14 -8.53 16 12 H 0.10 2.98 7.16 -52.48 -0.38 2.61 16 13 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 14 N -0.90 -24.49 13.05 55.49 0.72 -23.76 16 15 Si 0.93 20.99 29.55 -169.99 -5.02 15.97 16 16 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 17 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 18 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 19 N -0.72 -5.56 4.53 -53.80 -0.24 -5.81 16 20 C 0.51 4.89 7.79 -10.99 -0.09 4.81 16 21 O -0.53 -7.21 15.70 5.56 0.09 -7.12 16 22 C -0.07 -0.50 6.19 -29.03 -0.18 -0.68 16 23 C -0.16 -1.41 5.00 -36.00 -0.18 -1.59 16 24 C -0.13 -1.15 10.05 -41.21 -0.41 -1.56 16 25 C -0.13 -1.10 10.18 -41.20 -0.42 -1.52 16 26 C -0.21 -1.71 11.23 29.04 0.33 -1.38 16 27 S 0.10 0.88 23.33 -107.50 -2.51 -1.63 16 28 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.03 0.26 7.75 -51.93 -0.40 -0.14 16 34 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 35 H 0.35 5.47 8.43 -39.29 -0.33 5.13 16 36 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.09 1.41 8.14 -51.93 -0.42 0.98 16 38 H 0.39 9.49 7.90 -40.82 -0.32 9.17 16 39 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 40 H 0.40 2.14 8.60 -40.82 -0.35 1.79 16 41 H 0.11 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.14 1.09 8.06 -52.49 -0.42 0.67 16 44 H 0.14 0.88 8.06 -52.49 -0.42 0.46 16 45 H 0.16 0.91 8.06 -52.49 -0.42 0.49 16 LS Contribution 398.25 15.07 6.00 6.00 Total: -1.00 -34.21 398.25 -9.73 -43.95 By element: Atomic # 1 Polarization: 19.67 SS G_CDS: -6.81 Total: 12.86 kcal Atomic # 6 Polarization: 1.98 SS G_CDS: -1.29 Total: 0.69 kcal Atomic # 7 Polarization: -54.73 SS G_CDS: -0.28 Total: -55.01 kcal Atomic # 8 Polarization: -23.00 SS G_CDS: 0.17 Total: -22.83 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Atomic # 16 Polarization: 0.88 SS G_CDS: -2.51 Total: -1.63 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -34.21 -9.73 -43.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699076815.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.170 kcal (2) G-P(sol) polarization free energy of solvation -34.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds