Wall clock time and date at job start Sat Apr 11 2020 05:40:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.52997 * 109.46817 * 119.99820 * 2 1 3 5 5 C 1.53004 * 109.47236 * 184.99998 * 4 2 1 6 6 N 1.46901 * 109.47251 * 180.02562 * 5 4 2 7 7 C 1.46904 * 110.99756 * 180.02562 * 6 5 4 8 8 C 1.50702 * 109.46621 * 179.97438 * 7 6 5 9 9 O 1.21292 * 120.00351 * 359.97438 * 8 7 6 10 10 N 1.34777 * 119.99570 * 179.97438 * 8 7 6 11 11 C 1.37099 * 120.00191 * 180.02562 * 10 8 7 12 12 H 1.08007 * 119.99299 * 359.97438 * 11 10 8 13 13 C 1.38942 * 120.00151 * 179.97438 * 11 10 8 14 14 N 1.31406 * 120.00423 * 0.02562 * 13 11 10 15 15 Si 1.86806 * 119.99797 * 179.97438 * 13 11 10 16 16 H 1.48496 * 109.47380 * 59.99916 * 15 13 11 17 17 H 1.48498 * 109.47198 * 180.02562 * 15 13 11 18 18 H 1.48499 * 109.47005 * 300.00008 * 15 13 11 19 19 N 1.46505 * 109.47411 * 239.99921 * 2 1 3 20 20 C 1.34769 * 119.99686 * 84.99974 * 19 2 1 21 21 O 1.21275 * 120.00678 * 0.02562 * 20 19 2 22 22 C 1.50701 * 119.99690 * 179.97438 * 20 19 2 23 23 C 1.50704 * 109.47153 * 179.97438 * 22 20 19 24 24 C 1.33386 * 125.19734 * 90.00447 * 23 22 20 25 25 C 1.38431 * 114.92111 * 179.97438 * 24 23 22 26 26 C 1.33396 * 114.91615 * 359.97438 * 25 24 23 27 27 S 1.75882 * 125.20518 * 269.69767 * 23 22 20 28 28 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 29 29 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 30 30 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47630 * 305.00128 * 4 2 1 32 32 H 1.09004 * 109.47346 * 65.00258 * 4 2 1 33 33 H 1.09001 * 109.46917 * 300.00567 * 5 4 2 34 34 H 1.09004 * 109.46741 * 59.99889 * 5 4 2 35 35 H 1.00898 * 111.00315 * 56.04456 * 6 5 4 36 36 H 1.08996 * 109.46840 * 299.99325 * 7 6 5 37 37 H 1.08996 * 109.47271 * 59.99446 * 7 6 5 38 38 H 0.97008 * 120.00259 * 359.97438 * 10 8 7 39 39 H 0.97000 * 120.00305 * 180.02562 * 14 13 11 40 40 H 0.97000 * 119.99634 * 265.00306 * 19 2 1 41 41 H 1.08996 * 109.47353 * 300.00507 * 22 20 19 42 42 H 1.09006 * 109.47337 * 60.00072 * 22 20 19 43 43 H 1.07998 * 122.54661 * 359.95255 * 24 23 22 44 44 H 1.07988 * 122.54275 * 180.02562 * 25 24 23 45 45 H 1.07996 * 125.20115 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5648 -0.6133 1.3138 6 7 4.0544 -1.3063 2.5130 7 6 5.5180 -1.2227 2.6085 8 6 5.9823 -1.9426 3.8484 9 8 5.1735 -2.4727 4.5807 10 7 7.2962 -1.9974 4.1436 11 6 7.7187 -2.6528 5.2712 12 1 6.9985 -3.1247 5.9232 13 6 9.0733 -2.7097 5.5752 14 7 9.9494 -2.1351 4.7822 15 14 9.6488 -3.6020 7.1121 16 1 9.2370 -5.0269 7.0408 17 1 11.1283 -3.5181 7.2084 18 1 9.0387 -2.9698 8.3093 19 7 2.0184 -0.6906 -1.1962 20 6 2.1472 -0.0183 -2.3570 21 8 1.8592 1.1585 -2.4115 22 6 2.6501 -0.7285 -3.5873 23 6 2.7001 0.2396 -4.7412 24 6 3.7492 0.9976 -5.0639 25 6 3.5627 1.8124 -6.1674 26 6 2.3622 1.7156 -6.7409 27 16 1.3869 0.5373 -5.8727 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6053 -0.2617 2.1370 32 1 1.7516 -1.7715 1.2056 33 1 3.9994 -1.0728 0.4261 34 1 3.8531 0.4370 1.3574 35 1 3.7450 -2.2666 2.5274 36 1 5.9664 -1.6859 1.7296 37 1 5.8195 -0.1767 2.6617 38 1 7.9430 -1.5738 3.5577 39 1 10.8951 -2.1752 4.9942 40 1 2.2491 -1.6318 -1.1525 41 1 3.6494 -1.1204 -3.3977 42 1 1.9779 -1.5509 -3.8325 43 1 4.6739 0.9775 -4.5065 44 1 4.3310 2.4754 -6.5364 45 1 2.0399 2.2726 -7.6082 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699076815.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:22 Heat of formation + Delta-G solvation = -73.870731 kcal Electronic energy + Delta-G solvation = -25567.249021 eV Core-core repulsion = 21709.888831 eV Total energy + Delta-G solvation = -3857.360190 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.96005 -40.14780 -38.70347 -37.83762 -36.26506 -35.67438 -33.57261 -33.26491 -32.17507 -30.30045 -28.02347 -27.77063 -25.79475 -24.44243 -23.30857 -22.18782 -21.50398 -21.04633 -20.15421 -19.90340 -18.24398 -18.08052 -17.82731 -17.26219 -16.89699 -16.48825 -16.31703 -16.08613 -15.96621 -15.34019 -15.20988 -15.10643 -14.76528 -14.33046 -14.02935 -13.83844 -13.76182 -13.56020 -13.50171 -13.46195 -13.27532 -13.17589 -12.90582 -12.78240 -12.44953 -12.43391 -12.24361 -12.13424 -12.03070 -11.78040 -11.66856 -11.49852 -10.93532 -10.36110 -10.07179 -10.01789 -9.57315 -9.35412 -9.30605 -8.46399 -5.95448 0.06780 0.74188 1.09607 1.40366 1.42454 1.53366 1.66894 1.81049 2.05149 2.29402 2.33496 2.89766 3.20801 3.50171 3.64117 3.88403 3.98266 4.09049 4.21894 4.23102 4.27204 4.31816 4.44849 4.47645 4.53184 4.54365 4.62860 4.69635 4.71125 4.75740 4.83456 4.96612 5.11936 5.20820 5.20941 5.32273 5.38605 5.40894 5.58163 5.59632 5.89088 6.10436 6.44885 6.59370 6.59980 7.12414 7.29908 7.56132 8.11160 8.70688 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.017071 B = 0.001708 C = 0.001581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1639.769682 B =16392.860240 C =17708.938791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.150 3.850 3 H 0.068 0.932 4 C -0.113 4.113 5 C 0.063 3.937 6 N -0.684 5.684 7 C 0.065 3.935 8 C 0.437 3.563 9 O -0.623 6.623 10 N -0.573 5.573 11 C -0.335 4.335 12 H 0.080 0.920 13 C -0.013 4.013 14 N -0.920 5.920 15 Si 0.994 3.006 16 H -0.270 1.270 17 H -0.271 1.271 18 H -0.273 1.273 19 N -0.713 5.713 20 C 0.513 3.487 21 O -0.574 6.574 22 C -0.069 4.069 23 C -0.170 4.170 24 C -0.143 4.143 25 C -0.145 4.145 26 C -0.218 4.218 27 S 0.087 5.913 28 H 0.072 0.928 29 H 0.043 0.957 30 H 0.070 0.930 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.043 0.957 34 H 0.064 0.936 35 H 0.347 0.653 36 H 0.068 0.932 37 H 0.098 0.902 38 H 0.396 0.604 39 H 0.278 0.722 40 H 0.415 0.585 41 H 0.137 0.863 42 H 0.127 0.873 43 H 0.145 0.855 44 H 0.156 0.844 45 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.223 3.719 -24.192 28.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.045 3.955 3 H 0.086 0.914 4 C -0.151 4.151 5 C -0.065 4.065 6 N -0.317 5.317 7 C -0.067 4.067 8 C 0.225 3.775 9 O -0.509 6.509 10 N -0.211 5.211 11 C -0.465 4.465 12 H 0.098 0.902 13 C -0.213 4.213 14 N -0.561 5.561 15 Si 0.817 3.183 16 H -0.195 1.195 17 H -0.195 1.195 18 H -0.198 1.198 19 N -0.366 5.366 20 C 0.299 3.701 21 O -0.453 6.453 22 C -0.111 4.111 23 C -0.288 4.288 24 C -0.173 4.173 25 C -0.175 4.175 26 C -0.353 4.353 27 S 0.350 5.650 28 H 0.091 0.909 29 H 0.062 0.938 30 H 0.089 0.911 31 H 0.102 0.898 32 H 0.102 0.898 33 H 0.061 0.939 34 H 0.082 0.918 35 H 0.166 0.834 36 H 0.086 0.914 37 H 0.116 0.884 38 H 0.230 0.770 39 H 0.087 0.913 40 H 0.252 0.748 41 H 0.155 0.845 42 H 0.145 0.855 43 H 0.163 0.837 44 H 0.173 0.827 45 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -17.324 4.208 -23.499 29.496 hybrid contribution 2.577 -0.341 0.032 2.599 sum -14.748 3.867 -23.467 27.985 Atomic orbital electron populations 1.22095 0.94443 1.02848 1.02079 1.20823 0.94403 0.96666 0.83653 0.91364 1.21761 0.94139 1.02142 0.97082 1.22004 0.95630 0.98966 0.89944 1.60029 1.08508 1.21911 1.41218 1.21511 0.89829 1.01096 0.94272 1.20888 0.82327 0.84833 0.89493 1.90486 1.54141 1.52102 1.54184 1.41943 1.06349 1.49210 1.23554 1.19647 0.92361 1.32089 1.02407 0.90230 1.26051 0.95189 0.98095 1.01975 1.69663 1.02943 1.44430 1.39080 0.84980 0.77271 0.78517 0.77518 1.19545 1.19537 1.19809 1.46040 1.66942 1.14706 1.08951 1.20892 0.77010 0.87007 0.85170 1.90722 1.51231 1.17827 1.85511 1.20273 1.06380 0.96634 0.87771 1.24058 0.97335 1.05307 1.02076 1.20363 1.00357 0.97672 0.98941 1.20422 0.98276 1.01837 0.96976 1.25902 0.97838 1.05182 1.06426 1.84169 1.18248 1.39206 1.23361 0.90896 0.93806 0.91066 0.89794 0.89762 0.93867 0.91776 0.83415 0.91427 0.88405 0.76996 0.91285 0.74847 0.84540 0.85487 0.83689 0.82669 0.79993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.37 9.48 71.98 0.68 -1.69 16 2 C 0.15 2.43 2.57 44.99 0.12 2.55 16 3 H 0.07 1.45 7.58 -2.39 -0.02 1.43 16 4 C -0.11 -1.85 5.01 30.59 0.15 -1.69 16 5 C 0.06 1.31 5.57 86.30 0.48 1.79 16 6 N -0.68 -20.13 6.12 -517.91 -3.17 -23.30 16 7 C 0.07 2.18 6.17 85.56 0.53 2.71 16 8 C 0.44 20.54 7.82 87.66 0.69 21.23 16 9 O -0.62 -34.07 15.78 -3.07 -0.05 -34.12 16 10 N -0.57 -29.25 5.29 -306.98 -1.62 -30.87 16 11 C -0.34 -18.97 9.68 84.04 0.81 -18.16 16 12 H 0.08 4.78 7.16 -2.91 -0.02 4.76 16 13 C -0.01 -0.71 5.50 84.93 0.47 -0.24 16 14 N -0.92 -49.44 13.05 21.66 0.28 -49.16 16 15 Si 0.99 42.62 29.55 68.60 2.03 44.65 16 16 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 17 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 18 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 19 N -0.71 -9.53 4.53 -442.54 -2.00 -11.54 16 20 C 0.51 9.10 7.79 87.66 0.68 9.78 16 21 O -0.57 -15.64 15.70 -3.01 -0.05 -15.68 16 22 C -0.07 -0.82 6.19 29.10 0.18 -0.64 16 23 C -0.17 -2.88 5.00 24.59 0.12 -2.76 16 24 C -0.14 -2.47 10.05 21.22 0.21 -2.25 16 25 C -0.14 -2.29 10.18 21.22 0.22 -2.07 16 26 C -0.22 -3.29 11.23 66.72 0.75 -2.54 16 27 S 0.09 1.43 23.33 -56.49 -1.32 0.12 16 28 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.04 0.76 7.75 -2.39 -0.02 0.74 16 34 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.35 10.36 8.43 -89.70 -0.76 9.60 16 36 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 37 H 0.10 3.05 8.14 -2.39 -0.02 3.03 16 38 H 0.40 19.19 7.90 -92.70 -0.73 18.45 16 39 H 0.28 13.99 8.31 -92.71 -0.77 13.22 16 40 H 0.41 3.19 8.60 -92.71 -0.80 2.40 16 41 H 0.14 0.97 8.14 -2.39 -0.02 0.95 16 42 H 0.13 0.89 8.14 -2.38 -0.02 0.88 16 43 H 0.15 2.17 8.06 -2.91 -0.02 2.14 16 44 H 0.16 1.80 8.06 -2.92 -0.02 1.78 16 45 H 0.18 1.82 8.06 -2.91 -0.02 1.80 16 Total: -1.00 -74.81 398.25 -1.07 -75.88 By element: Atomic # 1 Polarization: 39.28 SS G_CDS: -1.26 Total: 38.02 kcal Atomic # 6 Polarization: -0.09 SS G_CDS: 6.09 Total: 6.00 kcal Atomic # 7 Polarization: -108.35 SS G_CDS: -6.52 Total: -114.86 kcal Atomic # 8 Polarization: -49.71 SS G_CDS: -0.10 Total: -49.81 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 2.03 Total: 44.65 kcal Atomic # 16 Polarization: 1.43 SS G_CDS: -1.32 Total: 0.12 kcal Total: -74.81 -1.07 -75.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699076815.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.010 kcal (2) G-P(sol) polarization free energy of solvation -74.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds