Wall clock time and date at job start Sat Apr 11 2020 05:40:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47090 * 2 1 4 4 C 1.52993 * 109.47103 * 239.99397 * 2 1 3 5 5 C 1.53000 * 109.47085 * 175.00088 * 4 2 1 6 6 N 1.46505 * 109.47420 * 180.02562 * 5 4 2 7 7 C 1.36937 * 120.00097 * 180.02562 * 6 5 4 8 8 H 1.07995 * 120.00157 * 359.97438 * 7 6 5 9 9 C 1.38810 * 119.99566 * 180.02562 * 7 6 5 10 10 N 1.31614 * 120.00572 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 119.99925 * 179.97438 * 9 7 6 12 12 H 1.48499 * 109.47413 * 89.99263 * 11 9 7 13 13 H 1.48503 * 109.47468 * 209.99667 * 11 9 7 14 14 H 1.48501 * 109.47074 * 329.99838 * 11 9 7 15 15 N 1.46506 * 109.46719 * 119.99989 * 2 1 3 16 16 C 1.34780 * 119.99577 * 274.99382 * 15 2 1 17 17 O 1.21277 * 120.00186 * 0.02562 * 16 15 2 18 18 C 1.50699 * 119.99717 * 180.02562 * 16 15 2 19 19 N 1.46498 * 109.47183 * 180.02562 * 18 16 15 20 20 C 1.46497 * 119.99861 * 270.00043 * 19 18 16 21 21 C 1.34774 * 120.00027 * 89.99874 * 19 18 16 22 22 O 1.21700 * 120.00295 * 0.13572 * 21 19 18 23 23 C 1.46587 * 119.99717 * 180.13223 * 21 19 18 24 24 C 1.36653 * 125.45710 * 171.40021 * 23 21 19 25 25 C 1.37470 * 113.29601 * 179.97438 * 24 23 21 26 26 C 1.33810 * 115.10323 * 359.97438 * 25 24 23 27 27 S 1.70622 * 110.95575 * 359.97438 * 26 25 24 28 28 H 1.08995 * 109.47053 * 60.00420 * 1 2 3 29 29 H 1.09007 * 109.47365 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47692 * 300.00186 * 1 2 3 31 31 H 1.08996 * 109.48034 * 295.00205 * 4 2 1 32 32 H 1.09003 * 109.47172 * 55.00155 * 4 2 1 33 33 H 1.09004 * 109.47100 * 300.00322 * 5 4 2 34 34 H 1.08993 * 109.47599 * 60.00566 * 5 4 2 35 35 H 0.97001 * 119.99817 * 359.97438 * 6 5 4 36 36 H 0.96999 * 120.00353 * 180.02562 * 10 9 7 37 37 H 0.96995 * 120.00326 * 95.00230 * 15 2 1 38 38 H 1.09004 * 109.47263 * 60.00604 * 18 16 15 39 39 H 1.09001 * 109.47041 * 300.00569 * 18 16 15 40 40 H 1.08996 * 109.47470 * 263.45634 * 20 19 18 41 41 H 1.09006 * 109.47528 * 23.46122 * 20 19 18 42 42 H 1.09000 * 109.47474 * 143.45659 * 20 19 18 43 43 H 1.07997 * 123.34915 * 0.27103 * 24 23 21 44 44 H 1.08002 * 122.44916 * 180.02562 * 25 24 23 45 45 H 1.08004 * 124.52467 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2491 5 6 3.5648 -0.6134 -1.3135 6 7 4.0532 -1.3036 -2.5100 7 6 5.3953 -1.3403 -2.7794 8 1 6.0937 -0.8602 -2.1101 9 6 5.8578 -1.9939 -3.9133 10 7 5.0066 -2.5787 -4.7292 11 14 7.6885 -2.0434 -4.2813 12 1 8.2887 -3.2446 -3.6470 13 1 7.8968 -2.1032 -5.7504 14 1 8.3357 -0.8219 -3.7389 15 7 2.0182 -0.6906 1.1962 16 6 2.1470 -0.0182 2.3572 17 8 1.8583 1.1585 2.4117 18 6 2.6498 -0.7284 3.5875 19 7 2.6985 0.2128 4.7091 20 6 3.9142 0.9906 4.9603 21 6 1.6248 0.3631 5.5097 22 8 0.6156 -0.2848 5.3025 23 6 1.6726 1.3071 6.6302 24 6 0.6082 1.6709 7.4062 25 6 0.9357 2.5740 8.3895 26 6 2.2230 2.9380 8.4200 27 16 3.1091 2.1506 7.1928 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.7516 -1.7716 -1.2055 32 1 1.6053 -0.2619 -2.1369 33 1 3.8532 0.4369 -1.3572 34 1 3.9994 -1.0729 -0.4259 35 1 3.4258 -1.7352 -3.1109 36 1 5.3299 -3.0357 -5.5214 37 1 2.2489 -1.6318 1.1528 38 1 3.6491 -1.1203 3.3980 39 1 1.9775 -1.5507 3.8326 40 1 4.5134 0.4923 5.7223 41 1 4.4913 1.0706 4.0390 42 1 3.6426 1.9878 5.3065 43 1 -0.3899 1.2837 7.2642 44 1 0.2075 2.9608 9.0870 45 1 2.6449 3.6369 9.1271 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699106126.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:25 Heat of formation + Delta-G solvation = -18.965824 kcal Electronic energy + Delta-G solvation = -26516.485260 eV Core-core repulsion = 22661.505925 eV Total energy + Delta-G solvation = -3854.979334 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.57245 -39.35658 -37.80975 -36.57760 -35.63525 -34.34383 -32.13950 -31.08809 -30.38009 -28.53513 -27.86329 -27.01412 -24.84781 -23.99414 -22.23663 -21.42774 -20.63367 -20.33837 -19.43093 -18.38462 -17.57459 -17.06894 -16.74806 -16.20896 -16.07366 -15.53597 -15.20173 -14.99055 -14.63017 -13.93699 -13.82943 -13.72967 -13.55298 -13.48271 -13.36890 -13.28631 -13.08724 -12.94773 -12.81597 -12.64182 -12.36846 -12.02117 -11.81396 -11.21366 -11.04091 -10.93594 -10.80696 -10.65943 -10.56579 -10.35044 -10.13979 -10.06344 -9.72388 -9.28649 -9.03968 -8.99131 -8.87569 -8.76112 -6.94845 -5.78937 -3.07865 0.19436 1.14491 1.58667 2.06819 2.41174 2.64052 2.93204 3.33945 3.41333 3.46506 3.48445 4.16963 4.54866 4.58657 4.65431 4.69983 4.85716 4.95760 4.96594 5.01656 5.15330 5.15613 5.27601 5.28246 5.37111 5.53755 5.60520 5.73725 5.78654 5.80837 5.92662 5.95445 5.99497 6.05867 6.23658 6.29413 6.34350 6.55824 6.78809 6.85242 6.89705 7.53622 7.67152 7.78699 8.25139 8.39953 9.50958 10.08952 10.43471 11.43893 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.018558 B = 0.002087 C = 0.001932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.460739 B =13413.685853 C =14489.612365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.147 3.853 3 H 0.087 0.913 4 C -0.135 4.135 5 C 0.155 3.845 6 N -0.734 5.734 7 C -0.240 4.240 8 H 0.069 0.931 9 C -0.015 4.015 10 N -0.933 5.933 11 Si 0.907 3.093 12 H -0.290 1.290 13 H -0.291 1.291 14 H -0.282 1.282 15 N -0.717 5.717 16 C 0.498 3.502 17 O -0.535 6.535 18 C 0.096 3.904 19 N -0.594 5.594 20 C 0.066 3.934 21 C 0.597 3.403 22 O -0.526 6.526 23 C -0.267 4.267 24 C -0.053 4.053 25 C -0.151 4.151 26 C -0.259 4.259 27 S 0.228 5.772 28 H 0.065 0.935 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.068 0.932 32 H 0.079 0.921 33 H 0.017 0.983 34 H 0.018 0.982 35 H 0.383 0.617 36 H 0.255 0.745 37 H 0.402 0.598 38 H 0.115 0.885 39 H 0.117 0.883 40 H 0.071 0.929 41 H 0.095 0.905 42 H 0.079 0.921 43 H 0.152 0.848 44 H 0.141 0.859 45 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.209 7.973 27.177 28.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.042 3.958 3 H 0.105 0.895 4 C -0.173 4.173 5 C 0.028 3.972 6 N -0.378 5.378 7 C -0.371 4.371 8 H 0.087 0.913 9 C -0.211 4.211 10 N -0.582 5.582 11 Si 0.739 3.261 12 H -0.217 1.217 13 H -0.217 1.217 14 H -0.208 1.208 15 N -0.369 5.369 16 C 0.282 3.718 17 O -0.411 6.411 18 C -0.030 4.030 19 N -0.326 5.326 20 C -0.079 4.079 21 C 0.385 3.615 22 O -0.404 6.404 23 C -0.387 4.387 24 C -0.087 4.087 25 C -0.182 4.182 26 C -0.396 4.396 27 S 0.497 5.503 28 H 0.084 0.916 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.087 0.913 32 H 0.097 0.903 33 H 0.035 0.965 34 H 0.036 0.964 35 H 0.217 0.783 36 H 0.065 0.935 37 H 0.237 0.763 38 H 0.133 0.867 39 H 0.135 0.865 40 H 0.089 0.911 41 H 0.113 0.887 42 H 0.096 0.904 43 H 0.170 0.830 44 H 0.159 0.841 45 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -5.246 8.576 26.702 28.532 hybrid contribution -0.539 -0.448 0.009 0.701 sum -5.785 8.128 26.711 28.513 Atomic orbital electron populations 1.22155 0.95459 1.02062 1.02245 1.20960 0.93578 0.97577 0.83664 0.89491 1.22066 0.98007 1.00850 0.96398 1.20621 0.90389 0.95542 0.90693 1.42378 1.05379 1.64972 1.25118 1.19215 0.83826 1.28558 1.05483 0.91266 1.24754 0.97737 1.00944 0.97656 1.69655 1.32779 1.40674 1.15079 0.86183 0.85077 0.77648 0.77239 1.21712 1.21745 1.20779 1.46089 1.67035 1.14245 1.09559 1.21016 0.78097 0.87849 0.84852 1.90695 1.49717 1.15935 1.84798 1.21395 1.04587 0.92505 0.84527 1.47126 1.14332 1.42517 1.28616 1.22075 0.86897 0.95673 1.03284 1.16945 0.82639 0.81224 0.80644 1.90830 1.30593 1.46624 1.72367 1.24516 0.98971 1.09592 1.05661 1.20782 0.99537 0.95463 0.92920 1.20008 0.96394 1.00634 1.01140 1.25920 1.00140 1.07589 1.05917 1.83568 1.09645 1.36105 1.21028 0.91600 0.92480 0.92456 0.91306 0.90268 0.96519 0.96426 0.78303 0.93498 0.76328 0.86743 0.86496 0.91084 0.88682 0.90373 0.83031 0.84149 0.81831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.02 9.48 37.16 0.35 -1.67 16 2 C 0.15 2.01 2.57 -67.93 -0.17 1.83 16 3 H 0.09 1.34 7.58 -51.93 -0.39 0.95 16 4 C -0.13 -2.06 4.87 -26.73 -0.13 -2.19 16 5 C 0.16 3.02 6.15 -4.04 -0.02 3.00 16 6 N -0.73 -18.36 5.60 -59.91 -0.34 -18.70 16 7 C -0.24 -6.67 9.99 -15.06 -0.15 -6.82 16 8 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 9 C -0.01 -0.43 5.50 -17.43 -0.10 -0.53 16 10 N -0.93 -28.05 13.06 55.49 0.72 -27.32 16 11 Si 0.91 22.23 29.55 -169.99 -5.02 17.20 16 12 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 13 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 14 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 15 N -0.72 -8.78 4.53 -53.81 -0.24 -9.02 16 16 C 0.50 6.59 7.86 -10.98 -0.09 6.50 16 17 O -0.54 -9.10 16.09 5.56 0.09 -9.01 16 18 C 0.10 0.96 5.86 -5.20 -0.03 0.93 16 19 N -0.59 -6.39 2.36 -184.55 -0.44 -6.82 16 20 C 0.07 0.50 8.92 59.85 0.53 1.03 16 21 C 0.60 7.71 7.64 -12.89 -0.10 7.62 16 22 O -0.53 -8.43 16.43 5.19 0.09 -8.34 16 23 C -0.27 -2.85 6.23 -36.79 -0.23 -3.08 16 24 C -0.05 -0.52 10.02 -40.43 -0.41 -0.93 16 25 C -0.15 -1.16 10.15 -41.42 -0.42 -1.58 16 26 C -0.26 -1.75 10.92 29.18 0.32 -1.43 16 27 S 0.23 1.62 17.90 -107.50 -1.92 -0.30 16 28 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 31 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 33 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 34 H 0.02 0.34 7.75 -51.93 -0.40 -0.06 16 35 H 0.38 10.05 7.67 -40.82 -0.31 9.74 16 36 H 0.26 7.41 8.31 -40.82 -0.34 7.08 16 37 H 0.40 4.11 8.60 -40.82 -0.35 3.76 16 38 H 0.11 0.78 8.07 -51.93 -0.42 0.36 16 39 H 0.12 1.13 7.42 -51.93 -0.39 0.74 16 40 H 0.07 0.37 7.76 -51.93 -0.40 -0.03 16 41 H 0.09 0.67 8.02 -51.93 -0.42 0.25 16 42 H 0.08 0.61 4.62 -23.27 -0.11 0.50 16 43 H 0.15 1.45 8.06 -52.49 -0.42 1.02 16 44 H 0.14 0.78 8.06 -52.49 -0.42 0.35 16 45 H 0.16 0.72 8.06 -52.48 -0.42 0.29 16 LS Contribution 389.67 15.07 5.87 5.87 Total: -1.00 -36.43 389.67 -8.38 -44.80 By element: Atomic # 1 Polarization: 15.49 SS G_CDS: -6.54 Total: 8.95 kcal Atomic # 6 Polarization: 3.34 SS G_CDS: -0.64 Total: 2.70 kcal Atomic # 7 Polarization: -61.58 SS G_CDS: -0.29 Total: -61.87 kcal Atomic # 8 Polarization: -17.52 SS G_CDS: 0.17 Total: -17.35 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.20 kcal Atomic # 16 Polarization: 1.62 SS G_CDS: -1.92 Total: -0.30 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -36.43 -8.38 -44.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699106126.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.836 kcal (2) G-P(sol) polarization free energy of solvation -36.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds