Wall clock time and date at job start Sat Apr 11 2020 05:40:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08996 * 109.47513 * 2 1 4 4 C 1.53003 * 109.47387 * 120.00436 * 2 1 3 5 5 C 1.52996 * 109.47272 * 185.00206 * 4 2 1 6 6 N 1.46501 * 109.47026 * 180.02562 * 5 4 2 7 7 C 1.36936 * 120.00202 * 179.97438 * 6 5 4 8 8 H 1.08004 * 119.99668 * 359.97438 * 7 6 5 9 9 C 1.38808 * 120.00301 * 179.97438 * 7 6 5 10 10 N 1.31625 * 119.99793 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 120.00207 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.46856 * 60.00332 * 11 9 7 13 13 H 1.48501 * 109.47312 * 180.02562 * 11 9 7 14 14 H 1.48502 * 109.47084 * 300.00404 * 11 9 7 15 15 N 1.46506 * 109.47338 * 239.99926 * 2 1 3 16 16 C 1.34780 * 119.99577 * 84.99599 * 15 2 1 17 17 O 1.21277 * 120.00186 * 0.02562 * 16 15 2 18 18 C 1.50699 * 119.99717 * 180.02562 * 16 15 2 19 19 N 1.46498 * 109.47183 * 180.02562 * 18 16 15 20 20 C 1.46497 * 119.99861 * 270.00043 * 19 18 16 21 21 C 1.34774 * 120.00027 * 89.99874 * 19 18 16 22 22 O 1.21700 * 120.00295 * 0.13572 * 21 19 18 23 23 C 1.46587 * 119.99717 * 180.13223 * 21 19 18 24 24 C 1.36653 * 125.45710 * 171.40021 * 23 21 19 25 25 C 1.37470 * 113.29601 * 179.97438 * 24 23 21 26 26 C 1.33810 * 115.10323 * 359.97438 * 25 24 23 27 27 S 1.70622 * 110.95575 * 359.97438 * 26 25 24 28 28 H 1.08996 * 109.47513 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47015 * 299.99772 * 1 2 3 30 30 H 1.08998 * 109.47322 * 59.99865 * 1 2 3 31 31 H 1.09002 * 109.46655 * 304.99861 * 4 2 1 32 32 H 1.08999 * 109.46833 * 64.99195 * 4 2 1 33 33 H 1.09002 * 109.46999 * 299.99445 * 5 4 2 34 34 H 1.08992 * 109.47647 * 59.99624 * 5 4 2 35 35 H 0.97007 * 119.99961 * 359.97438 * 6 5 4 36 36 H 0.96997 * 119.99413 * 179.97438 * 10 9 7 37 37 H 0.96995 * 120.00326 * 265.00447 * 15 2 1 38 38 H 1.09004 * 109.47263 * 60.00604 * 18 16 15 39 39 H 1.09001 * 109.47041 * 300.00569 * 18 16 15 40 40 H 1.08996 * 109.47470 * 263.45634 * 20 19 18 41 41 H 1.09006 * 109.47528 * 23.46122 * 20 19 18 42 42 H 1.09000 * 109.47474 * 143.45659 * 20 19 18 43 43 H 1.07997 * 123.34915 * 0.27103 * 24 23 21 44 44 H 1.08002 * 122.44916 * 180.02562 * 25 24 23 45 45 H 1.08004 * 124.52467 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5648 -0.6133 1.3136 6 7 4.0532 -1.3046 2.5094 7 6 5.3953 -1.3415 2.7788 8 1 6.0938 -0.8613 2.1095 9 6 5.8580 -1.9959 3.9121 10 7 5.0068 -2.5815 4.7276 11 14 7.6889 -2.0469 4.2792 12 1 8.2021 -0.6616 4.4303 13 1 7.9208 -2.8011 5.5372 14 1 8.3993 -2.7189 3.1616 15 7 2.0184 -0.6906 -1.1962 16 6 2.1470 -0.0182 -2.3572 17 8 1.8589 1.1586 -2.4115 18 6 2.6488 -0.7287 -3.5878 19 7 2.6987 0.2128 -4.7090 20 6 1.5319 0.3779 -5.5792 21 6 3.8181 0.9270 -4.9400 22 8 4.7883 0.7880 -4.2186 23 6 3.8670 1.8711 -6.0602 24 6 4.8711 2.7668 -6.2988 25 6 4.6618 3.5318 -7.4216 26 6 3.5268 3.2730 -8.0814 27 16 2.6442 2.0309 -7.3136 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.6054 -0.2618 2.1369 32 1 1.7516 -1.7716 1.2055 33 1 3.9995 -1.0729 0.4259 34 1 3.8532 0.4368 1.3573 35 1 3.4258 -1.7361 3.1104 36 1 5.3302 -3.0392 5.5193 37 1 2.2490 -1.6318 -1.1527 38 1 1.9759 -1.5505 -3.8327 39 1 3.6480 -1.1213 -3.3986 40 1 1.6492 -0.2443 -6.4664 41 1 0.6322 0.0783 -5.0416 42 1 1.4458 1.4229 -5.8772 43 1 5.7445 2.8608 -5.6706 44 1 5.3626 4.2860 -7.7479 45 1 3.2113 3.7823 -8.9801 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699106128.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:27 Heat of formation + Delta-G solvation = -17.658731 kcal Electronic energy + Delta-G solvation = -26612.886893 eV Core-core repulsion = 22757.964239 eV Total energy + Delta-G solvation = -3854.922655 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.54880 -39.33956 -37.78281 -36.56036 -35.61500 -34.30597 -32.12000 -31.05764 -30.35976 -28.53020 -27.84962 -27.01371 -24.82571 -23.95497 -22.21390 -21.39124 -20.61392 -20.33372 -19.39425 -18.37995 -17.55904 -17.02910 -16.71721 -16.16215 -16.01608 -15.52760 -15.35387 -14.86690 -14.58525 -13.88686 -13.83601 -13.73768 -13.54182 -13.45862 -13.37071 -13.26795 -13.05779 -12.92245 -12.80154 -12.63172 -12.36020 -12.02620 -11.82565 -11.18866 -10.99053 -10.94243 -10.75269 -10.61657 -10.55194 -10.29469 -10.13081 -10.03412 -9.66161 -9.25175 -9.01824 -8.98987 -8.82020 -8.74188 -6.89154 -5.73471 -3.01985 0.22426 1.16331 1.59925 2.10677 2.42442 2.63829 2.97596 3.34725 3.47919 3.51493 3.53391 4.19167 4.55154 4.60077 4.67343 4.69396 4.81082 4.94031 4.99531 5.02150 5.18798 5.20033 5.21416 5.26702 5.36726 5.57995 5.64748 5.72654 5.75953 5.83539 5.94060 5.95646 6.03498 6.04709 6.25487 6.29234 6.36643 6.56626 6.86263 6.90412 6.91834 7.54061 7.74392 7.84135 8.25402 8.45861 9.56818 10.14271 10.49185 11.49430 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.014395 B = 0.002301 C = 0.002052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1944.676831 B =12168.151421 C =13640.298284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.146 3.854 3 H 0.087 0.913 4 C -0.134 4.134 5 C 0.154 3.846 6 N -0.734 5.734 7 C -0.238 4.238 8 H 0.069 0.931 9 C -0.015 4.015 10 N -0.935 5.935 11 Si 0.908 3.092 12 H -0.286 1.286 13 H -0.291 1.291 14 H -0.286 1.286 15 N -0.717 5.717 16 C 0.497 3.503 17 O -0.535 6.535 18 C 0.097 3.903 19 N -0.596 5.596 20 C 0.068 3.932 21 C 0.595 3.405 22 O -0.518 6.518 23 C -0.265 4.265 24 C -0.053 4.053 25 C -0.150 4.150 26 C -0.259 4.259 27 S 0.221 5.779 28 H 0.056 0.944 29 H 0.065 0.935 30 H 0.055 0.945 31 H 0.078 0.922 32 H 0.068 0.932 33 H 0.019 0.981 34 H 0.018 0.982 35 H 0.383 0.617 36 H 0.255 0.745 37 H 0.402 0.598 38 H 0.111 0.889 39 H 0.120 0.880 40 H 0.069 0.931 41 H 0.091 0.909 42 H 0.079 0.921 43 H 0.154 0.846 44 H 0.141 0.859 45 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.195 6.434 -28.744 31.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.041 3.959 3 H 0.105 0.895 4 C -0.172 4.172 5 C 0.026 3.974 6 N -0.378 5.378 7 C -0.369 4.369 8 H 0.087 0.913 9 C -0.211 4.211 10 N -0.584 5.584 11 Si 0.739 3.261 12 H -0.212 1.212 13 H -0.217 1.217 14 H -0.212 1.212 15 N -0.369 5.369 16 C 0.282 3.718 17 O -0.411 6.411 18 C -0.030 4.030 19 N -0.329 5.329 20 C -0.077 4.077 21 C 0.383 3.617 22 O -0.395 6.395 23 C -0.385 4.385 24 C -0.086 4.086 25 C -0.180 4.180 26 C -0.395 4.395 27 S 0.490 5.510 28 H 0.075 0.925 29 H 0.084 0.916 30 H 0.074 0.926 31 H 0.097 0.903 32 H 0.087 0.913 33 H 0.037 0.963 34 H 0.035 0.965 35 H 0.216 0.784 36 H 0.065 0.935 37 H 0.237 0.763 38 H 0.129 0.871 39 H 0.137 0.863 40 H 0.088 0.912 41 H 0.110 0.890 42 H 0.096 0.904 43 H 0.171 0.829 44 H 0.159 0.841 45 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -13.071 6.550 -28.748 32.253 hybrid contribution 2.227 0.282 0.699 2.351 sum -10.844 6.832 -28.049 30.839 Atomic orbital electron populations 1.22144 0.95473 1.01908 1.02201 1.20971 0.93436 0.97749 0.83765 0.89488 1.22060 0.98107 1.00730 0.96338 1.20634 0.90316 0.95667 0.90774 1.42358 1.05357 1.64931 1.25156 1.19207 0.83856 1.28405 1.05470 0.91266 1.24740 0.97739 1.00952 0.97665 1.69654 1.32844 1.40775 1.15162 0.86253 0.85124 0.77521 0.77234 1.21248 1.21685 1.21244 1.46086 1.67036 1.14263 1.09536 1.21031 0.77867 0.87870 0.85071 1.90693 1.49746 1.15681 1.85014 1.21382 1.05324 0.91504 0.84758 1.47114 1.13798 1.42389 1.29567 1.22035 0.89004 1.02288 0.94405 1.16969 0.82565 0.79254 0.82931 1.90882 1.35195 1.65435 1.47954 1.24511 1.02727 1.07739 1.03516 1.20826 0.98443 0.92733 0.96614 1.20024 0.98711 1.02917 0.96374 1.25888 1.01005 1.06582 1.06057 1.83444 1.20179 1.31829 1.15597 0.92519 0.91571 0.92577 0.90298 0.91340 0.96276 0.96454 0.78351 0.93518 0.76336 0.87061 0.86254 0.91222 0.89047 0.90370 0.82885 0.84095 0.81857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.81 9.48 37.16 0.35 -1.46 16 2 C 0.15 1.99 2.57 -67.93 -0.17 1.81 16 3 H 0.09 1.40 7.58 -51.93 -0.39 1.01 16 4 C -0.13 -2.09 4.87 -26.73 -0.13 -2.22 16 5 C 0.15 3.18 6.15 -4.04 -0.02 3.16 16 6 N -0.73 -19.05 5.60 -59.91 -0.34 -19.39 16 7 C -0.24 -6.90 9.99 -15.06 -0.15 -7.05 16 8 H 0.07 1.98 7.83 -52.48 -0.41 1.57 16 9 C -0.02 -0.45 5.50 -17.43 -0.10 -0.55 16 10 N -0.94 -28.71 13.06 55.49 0.72 -27.98 16 11 Si 0.91 23.04 29.55 -169.99 -5.02 18.01 16 12 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 13 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 14 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 15 N -0.72 -8.78 4.53 -53.80 -0.24 -9.03 16 16 C 0.50 6.59 7.86 -10.98 -0.09 6.51 16 17 O -0.54 -9.10 16.09 5.56 0.09 -9.01 16 18 C 0.10 0.97 5.86 -5.20 -0.03 0.94 16 19 N -0.60 -6.42 2.36 -184.55 -0.44 -6.86 16 20 C 0.07 0.46 8.92 59.85 0.53 1.00 16 21 C 0.59 8.12 7.64 -12.89 -0.10 8.02 16 22 O -0.52 -9.10 16.43 5.19 0.09 -9.01 16 23 C -0.26 -2.96 6.23 -36.79 -0.23 -3.19 16 24 C -0.05 -0.56 10.02 -40.43 -0.41 -0.96 16 25 C -0.15 -1.22 10.15 -41.42 -0.42 -1.64 16 26 C -0.26 -1.80 10.92 29.18 0.32 -1.48 16 27 S 0.22 1.56 17.90 -107.50 -1.92 -0.36 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 32 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.02 0.40 7.75 -51.93 -0.40 0.00 16 34 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 35 H 0.38 10.28 7.67 -40.82 -0.31 9.97 16 36 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 37 H 0.40 4.12 8.60 -40.82 -0.35 3.77 16 38 H 0.11 0.64 8.07 -51.93 -0.42 0.22 16 39 H 0.12 1.28 7.42 -51.93 -0.39 0.90 16 40 H 0.07 0.31 7.76 -51.93 -0.40 -0.09 16 41 H 0.09 0.51 8.02 -51.93 -0.42 0.09 16 42 H 0.08 0.56 4.62 -23.27 -0.11 0.46 16 43 H 0.15 1.64 8.06 -52.49 -0.42 1.22 16 44 H 0.14 0.86 8.06 -52.49 -0.42 0.44 16 45 H 0.16 0.73 8.06 -52.48 -0.42 0.31 16 LS Contribution 389.67 15.07 5.87 5.87 Total: -1.00 -37.85 389.67 -8.38 -46.22 By element: Atomic # 1 Polarization: 15.21 SS G_CDS: -6.54 Total: 8.67 kcal Atomic # 6 Polarization: 3.51 SS G_CDS: -0.64 Total: 2.87 kcal Atomic # 7 Polarization: -62.97 SS G_CDS: -0.29 Total: -63.26 kcal Atomic # 8 Polarization: -18.20 SS G_CDS: 0.17 Total: -18.02 kcal Atomic # 14 Polarization: 23.04 SS G_CDS: -5.02 Total: 18.01 kcal Atomic # 16 Polarization: 1.56 SS G_CDS: -1.92 Total: -0.36 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -37.85 -8.38 -46.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699106128.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.563 kcal (2) G-P(sol) polarization free energy of solvation -37.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds