Wall clock time and date at job start Sat Apr 11 2020 05:40:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08996 * 109.47513 * 2 1 4 4 C 1.53003 * 109.47387 * 120.00436 * 2 1 3 5 5 C 1.52996 * 109.47272 * 185.00206 * 4 2 1 6 6 N 1.46501 * 109.47026 * 180.02562 * 5 4 2 7 7 C 1.36936 * 120.00202 * 179.97438 * 6 5 4 8 8 H 1.08004 * 119.99668 * 359.97438 * 7 6 5 9 9 C 1.38808 * 120.00301 * 179.97438 * 7 6 5 10 10 N 1.31625 * 119.99793 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 120.00207 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.46856 * 60.00332 * 11 9 7 13 13 H 1.48501 * 109.47312 * 180.02562 * 11 9 7 14 14 H 1.48502 * 109.47084 * 300.00404 * 11 9 7 15 15 N 1.46506 * 109.47338 * 239.99926 * 2 1 3 16 16 C 1.34780 * 119.99577 * 84.99599 * 15 2 1 17 17 O 1.21277 * 120.00186 * 0.02562 * 16 15 2 18 18 C 1.50699 * 119.99717 * 180.02562 * 16 15 2 19 19 N 1.46498 * 109.47183 * 180.02562 * 18 16 15 20 20 C 1.46497 * 119.99861 * 270.00043 * 19 18 16 21 21 C 1.34774 * 120.00027 * 89.99874 * 19 18 16 22 22 O 1.21700 * 120.00295 * 0.13572 * 21 19 18 23 23 C 1.46587 * 119.99717 * 180.13223 * 21 19 18 24 24 C 1.36653 * 125.45710 * 171.40021 * 23 21 19 25 25 C 1.37470 * 113.29601 * 179.97438 * 24 23 21 26 26 C 1.33810 * 115.10323 * 359.97438 * 25 24 23 27 27 S 1.70622 * 110.95575 * 359.97438 * 26 25 24 28 28 H 1.08996 * 109.47513 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47015 * 299.99772 * 1 2 3 30 30 H 1.08998 * 109.47322 * 59.99865 * 1 2 3 31 31 H 1.09002 * 109.46655 * 304.99861 * 4 2 1 32 32 H 1.08999 * 109.46833 * 64.99195 * 4 2 1 33 33 H 1.09002 * 109.46999 * 299.99445 * 5 4 2 34 34 H 1.08992 * 109.47647 * 59.99624 * 5 4 2 35 35 H 0.97007 * 119.99961 * 359.97438 * 6 5 4 36 36 H 0.96997 * 119.99413 * 179.97438 * 10 9 7 37 37 H 0.96995 * 120.00326 * 265.00447 * 15 2 1 38 38 H 1.09004 * 109.47263 * 60.00604 * 18 16 15 39 39 H 1.09001 * 109.47041 * 300.00569 * 18 16 15 40 40 H 1.08996 * 109.47470 * 263.45634 * 20 19 18 41 41 H 1.09006 * 109.47528 * 23.46122 * 20 19 18 42 42 H 1.09000 * 109.47474 * 143.45659 * 20 19 18 43 43 H 1.07997 * 123.34915 * 0.27103 * 24 23 21 44 44 H 1.08002 * 122.44916 * 180.02562 * 25 24 23 45 45 H 1.08004 * 124.52467 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5648 -0.6133 1.3136 6 7 4.0532 -1.3046 2.5094 7 6 5.3953 -1.3415 2.7788 8 1 6.0938 -0.8613 2.1095 9 6 5.8580 -1.9959 3.9121 10 7 5.0068 -2.5815 4.7276 11 14 7.6889 -2.0469 4.2792 12 1 8.2021 -0.6616 4.4303 13 1 7.9208 -2.8011 5.5372 14 1 8.3993 -2.7189 3.1616 15 7 2.0184 -0.6906 -1.1962 16 6 2.1470 -0.0182 -2.3572 17 8 1.8589 1.1586 -2.4115 18 6 2.6488 -0.7287 -3.5878 19 7 2.6987 0.2128 -4.7090 20 6 1.5319 0.3779 -5.5792 21 6 3.8181 0.9270 -4.9400 22 8 4.7883 0.7880 -4.2186 23 6 3.8670 1.8711 -6.0602 24 6 4.8711 2.7668 -6.2988 25 6 4.6618 3.5318 -7.4216 26 6 3.5268 3.2730 -8.0814 27 16 2.6442 2.0309 -7.3136 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.6054 -0.2618 2.1369 32 1 1.7516 -1.7716 1.2055 33 1 3.9995 -1.0729 0.4259 34 1 3.8532 0.4368 1.3573 35 1 3.4258 -1.7361 3.1104 36 1 5.3302 -3.0392 5.5193 37 1 2.2490 -1.6318 -1.1527 38 1 1.9759 -1.5505 -3.8327 39 1 3.6480 -1.1213 -3.3986 40 1 1.6492 -0.2443 -6.4664 41 1 0.6322 0.0783 -5.0416 42 1 1.4458 1.4229 -5.8772 43 1 5.7445 2.8608 -5.6706 44 1 5.3626 4.2860 -7.7479 45 1 3.2113 3.7823 -8.9801 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699106128.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:27 Heat of formation + Delta-G solvation = -45.093768 kcal Electronic energy + Delta-G solvation = -26614.076566 eV Core-core repulsion = 22757.964239 eV Total energy + Delta-G solvation = -3856.112327 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.51069 -40.37773 -38.49436 -37.86506 -36.63251 -36.06178 -33.68568 -32.50634 -31.28858 -29.52853 -29.17443 -27.75534 -25.94172 -25.45994 -23.49936 -22.75810 -21.74814 -21.32417 -20.10271 -19.29373 -19.13519 -18.41540 -17.71504 -17.03948 -16.87464 -16.71672 -16.36850 -16.21250 -15.81622 -15.49016 -15.21734 -15.10635 -14.68195 -14.53833 -14.29278 -14.19363 -14.02845 -13.76697 -13.71624 -13.56372 -13.18192 -13.10247 -12.89882 -12.89288 -12.84597 -12.39739 -12.31889 -12.04031 -11.94375 -11.66123 -11.52461 -11.30894 -11.19887 -10.97418 -10.08622 -10.08163 -9.72823 -9.36017 -9.04388 -7.99147 -5.28325 -0.49846 0.50525 0.99718 1.34895 1.44509 1.47481 1.53965 1.59478 1.65646 2.11263 2.37787 2.52832 3.33718 3.46149 3.59050 3.80792 4.00551 4.04098 4.12927 4.14817 4.18627 4.33501 4.36172 4.37823 4.51814 4.54432 4.54990 4.64439 4.71430 4.74683 4.86553 4.98675 5.01317 5.16528 5.20223 5.25200 5.25799 5.32724 5.36215 5.44654 5.56700 6.09062 6.23714 6.54278 6.91429 7.24175 7.30163 8.04263 8.29902 9.23678 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.014395 B = 0.002301 C = 0.002052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1944.676831 B =12168.151421 C =13640.298284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.152 3.848 3 H 0.057 0.943 4 C -0.117 4.117 5 C 0.154 3.846 6 N -0.744 5.744 7 C -0.252 4.252 8 H 0.066 0.934 9 C -0.071 4.071 10 N -0.965 5.965 11 Si 0.973 3.027 12 H -0.281 1.281 13 H -0.289 1.289 14 H -0.278 1.278 15 N -0.710 5.710 16 C 0.494 3.506 17 O -0.577 6.577 18 C 0.097 3.903 19 N -0.595 5.595 20 C 0.058 3.942 21 C 0.583 3.417 22 O -0.579 6.579 23 C -0.311 4.311 24 C -0.069 4.069 25 C -0.165 4.165 26 C -0.251 4.251 27 S 0.295 5.705 28 H 0.075 0.925 29 H 0.072 0.928 30 H 0.052 0.948 31 H 0.079 0.921 32 H 0.084 0.916 33 H 0.021 0.979 34 H -0.001 1.001 35 H 0.377 0.623 36 H 0.254 0.746 37 H 0.414 0.586 38 H 0.164 0.836 39 H 0.109 0.891 40 H 0.100 0.900 41 H 0.110 0.890 42 H 0.075 0.925 43 H 0.134 0.866 44 H 0.158 0.842 45 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.978 5.869 -31.116 34.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.047 3.953 3 H 0.076 0.924 4 C -0.155 4.155 5 C 0.027 3.973 6 N -0.387 5.387 7 C -0.384 4.384 8 H 0.084 0.916 9 C -0.264 4.264 10 N -0.615 5.615 11 Si 0.801 3.199 12 H -0.208 1.208 13 H -0.215 1.215 14 H -0.204 1.204 15 N -0.363 5.363 16 C 0.280 3.720 17 O -0.457 6.457 18 C -0.029 4.029 19 N -0.325 5.325 20 C -0.085 4.085 21 C 0.373 3.627 22 O -0.460 6.460 23 C -0.431 4.431 24 C -0.103 4.103 25 C -0.195 4.195 26 C -0.388 4.388 27 S 0.564 5.436 28 H 0.094 0.906 29 H 0.091 0.909 30 H 0.071 0.929 31 H 0.098 0.902 32 H 0.103 0.897 33 H 0.039 0.961 34 H 0.017 0.983 35 H 0.209 0.791 36 H 0.062 0.938 37 H 0.251 0.749 38 H 0.181 0.819 39 H 0.127 0.873 40 H 0.118 0.882 41 H 0.128 0.872 42 H 0.092 0.908 43 H 0.152 0.848 44 H 0.176 0.824 45 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -14.906 5.965 -31.165 35.058 hybrid contribution 2.710 0.507 1.357 3.073 sum -12.196 6.472 -29.809 32.851 Atomic orbital electron populations 1.22037 0.92984 1.03221 1.02372 1.20789 0.95202 0.95933 0.83410 0.92441 1.21894 0.94106 1.02042 0.97476 1.20744 0.93911 0.93770 0.88849 1.42520 1.04433 1.65238 1.26491 1.19530 0.85317 1.28046 1.05531 0.91579 1.25546 1.02101 1.01043 0.97661 1.69791 1.34603 1.41608 1.15501 0.85235 0.80034 0.77558 0.77075 1.20773 1.21456 1.20376 1.46036 1.66584 1.14771 1.08949 1.21625 0.76951 0.87438 0.85971 1.90673 1.51741 1.17542 1.85733 1.21563 1.05789 0.92195 0.83350 1.47295 1.14034 1.41501 1.29678 1.22363 0.88146 1.02808 0.95201 1.17480 0.82609 0.79503 0.83123 1.90825 1.37383 1.67541 1.50281 1.24562 1.05276 1.08283 1.04973 1.20939 0.98180 0.93655 0.97570 1.20126 0.99985 1.03467 0.95900 1.26380 1.00060 1.06034 1.06370 1.83020 1.17441 1.30668 1.12477 0.90559 0.90931 0.92903 0.90218 0.89707 0.96118 0.98346 0.79059 0.93764 0.74942 0.81874 0.87316 0.88155 0.87156 0.90766 0.84807 0.82433 0.78670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.10 9.48 71.98 0.68 -2.42 16 2 C 0.15 4.08 2.57 44.99 0.12 4.20 16 3 H 0.06 1.91 7.58 -2.39 -0.02 1.89 16 4 C -0.12 -3.58 4.87 30.59 0.15 -3.43 16 5 C 0.15 6.47 6.15 86.38 0.53 7.00 16 6 N -0.74 -39.13 5.60 -343.46 -1.92 -41.05 16 7 C -0.25 -14.81 9.99 84.03 0.84 -13.97 16 8 H 0.07 3.83 7.83 -2.91 -0.02 3.81 16 9 C -0.07 -4.19 5.50 84.86 0.47 -3.72 16 10 N -0.96 -59.60 13.06 21.65 0.28 -59.32 16 11 Si 0.97 47.59 29.55 68.60 2.03 49.62 16 12 H -0.28 -13.47 7.11 99.48 0.71 -12.77 16 13 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 14 H -0.28 -13.13 7.11 99.48 0.71 -12.43 16 15 N -0.71 -16.86 4.53 -442.53 -2.00 -18.87 16 16 C 0.49 12.95 7.86 87.66 0.69 13.64 16 17 O -0.58 -20.00 16.09 -3.02 -0.05 -20.05 16 18 C 0.10 1.85 5.86 85.63 0.50 2.35 16 19 N -0.59 -12.42 2.36 -856.00 -2.02 -14.44 16 20 C 0.06 0.65 8.92 127.77 1.14 1.79 16 21 C 0.58 16.63 7.64 86.42 0.66 17.29 16 22 O -0.58 -22.05 16.43 -4.35 -0.07 -22.12 16 23 C -0.31 -7.09 6.23 24.08 0.15 -6.94 16 24 C -0.07 -1.54 10.02 21.72 0.22 -1.32 16 25 C -0.17 -2.57 10.15 21.08 0.21 -2.36 16 26 C -0.25 -2.84 10.92 66.81 0.73 -2.11 16 27 S 0.30 3.48 17.90 -56.49 -1.01 2.47 16 28 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.07 1.44 8.14 -2.38 -0.02 1.42 16 30 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.08 2.45 8.14 -2.39 -0.02 2.44 16 32 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 33 H 0.02 0.87 7.75 -2.39 -0.02 0.86 16 34 H 0.00 -0.07 8.14 -2.39 -0.02 -0.09 16 35 H 0.38 20.47 7.67 -92.70 -0.71 19.76 16 36 H 0.25 15.12 8.31 -92.71 -0.77 14.35 16 37 H 0.41 7.86 8.60 -92.71 -0.80 7.06 16 38 H 0.16 1.31 8.07 -2.38 -0.02 1.29 16 39 H 0.11 2.37 7.42 -2.39 -0.02 2.35 16 40 H 0.10 0.53 7.76 -2.39 -0.02 0.51 16 41 H 0.11 0.86 8.02 -2.38 -0.02 0.84 16 42 H 0.07 0.90 4.62 -20.61 -0.10 0.81 16 43 H 0.13 3.32 8.06 -2.91 -0.02 3.30 16 44 H 0.16 1.78 8.06 -2.91 -0.02 1.76 16 45 H 0.20 0.92 8.06 -2.91 -0.02 0.90 16 Total: -1.00 -85.88 389.67 1.74 -84.14 By element: Atomic # 1 Polarization: 30.19 SS G_CDS: -0.57 Total: 29.61 kcal Atomic # 6 Polarization: 2.91 SS G_CDS: 7.09 Total: 10.00 kcal Atomic # 7 Polarization: -128.01 SS G_CDS: -5.67 Total: -133.67 kcal Atomic # 8 Polarization: -42.04 SS G_CDS: -0.12 Total: -42.16 kcal Atomic # 14 Polarization: 47.59 SS G_CDS: 2.03 Total: 49.62 kcal Atomic # 16 Polarization: 3.48 SS G_CDS: -1.01 Total: 2.47 kcal Total: -85.88 1.74 -84.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699106128.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.044 kcal (2) G-P(sol) polarization free energy of solvation -85.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds