Wall clock time and date at job start Sat Apr 11 2020 05:40:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.47145 * 2 1 4 4 C 1.53006 * 109.47065 * 240.00872 * 2 1 3 5 5 C 1.52992 * 109.47159 * 174.99654 * 4 2 1 6 6 N 1.46506 * 109.47390 * 179.97438 * 5 4 2 7 7 C 1.36930 * 120.00358 * 180.02562 * 6 5 4 8 8 H 1.08007 * 119.99903 * 0.02562 * 7 6 5 9 9 C 1.38806 * 120.00165 * 180.02562 * 7 6 5 10 10 N 1.31627 * 120.00373 * 180.02562 * 9 7 6 11 11 Si 1.86801 * 119.99984 * 359.97438 * 9 7 6 12 12 H 1.48502 * 109.46663 * 90.00346 * 11 9 7 13 13 H 1.48498 * 109.47356 * 209.99797 * 11 9 7 14 14 H 1.48498 * 109.47143 * 330.00320 * 11 9 7 15 15 N 1.46497 * 109.47313 * 120.00897 * 2 1 3 16 16 C 1.34777 * 119.99525 * 274.99614 * 15 2 1 17 17 O 1.21283 * 120.00463 * 0.02562 * 16 15 2 18 18 C 1.50700 * 119.99675 * 179.72583 * 16 15 2 19 19 C 1.53004 * 109.47208 * 180.27843 * 18 16 15 20 20 N 1.46499 * 109.47198 * 179.97438 * 19 18 16 21 21 C 1.34777 * 120.00065 * 180.02562 * 20 19 18 22 22 O 1.21643 * 119.99891 * 359.97438 * 21 20 19 23 23 C 1.47185 * 120.00111 * 180.02562 * 21 20 19 24 24 C 1.44427 * 123.45964 * 179.72775 * 23 21 20 25 25 C 1.32772 * 113.08237 * 179.80546 * 24 23 21 26 26 S 1.75506 * 110.57312 * 0.44385 * 25 24 23 27 27 C 1.36011 * 123.46153 * 0.02562 * 23 21 20 28 28 H 1.08998 * 109.46617 * 299.99415 * 1 2 3 29 29 H 1.09003 * 109.47371 * 59.99288 * 1 2 3 30 30 H 1.09002 * 109.46839 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46733 * 294.99544 * 4 2 1 32 32 H 1.09003 * 109.47212 * 54.99369 * 4 2 1 33 33 H 1.08994 * 109.47570 * 300.00116 * 5 4 2 34 34 H 1.09008 * 109.47295 * 60.00253 * 5 4 2 35 35 H 0.97004 * 119.99536 * 0.02562 * 6 5 4 36 36 H 0.97001 * 120.00278 * 180.02562 * 10 9 7 37 37 H 0.97000 * 120.00580 * 95.00360 * 15 2 1 38 38 H 1.09009 * 109.47352 * 300.27556 * 18 16 15 39 39 H 1.08998 * 109.47585 * 60.27844 * 18 16 15 40 40 H 1.09000 * 109.46887 * 300.00372 * 19 18 16 41 41 H 1.08998 * 109.46846 * 59.99549 * 19 18 16 42 42 H 0.97000 * 119.99795 * 359.97438 * 20 19 18 43 43 H 1.08004 * 123.46087 * 0.02562 * 24 23 21 44 44 H 1.08002 * 124.71630 * 180.17753 * 25 24 23 45 45 H 1.08002 * 124.58764 * 0.02562 * 27 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2494 5 6 3.5648 -0.6131 -1.3139 6 7 4.0532 -1.3040 -2.5099 7 6 5.3952 -1.3408 -2.7793 8 1 6.0938 -0.8608 -2.1099 9 6 5.8579 -1.9950 -3.9127 10 7 7.1480 -2.0309 -4.1715 11 14 4.6498 -2.8259 -5.0702 12 1 4.2148 -1.8583 -6.1094 13 1 5.3066 -3.9883 -5.7202 14 1 3.4678 -3.2913 -4.3012 15 7 2.0184 -0.6908 1.1960 16 6 2.1472 -0.0185 2.3570 17 8 1.8583 1.1582 2.4118 18 6 2.6437 -0.7305 3.5889 19 6 2.6899 0.2511 4.7616 20 7 3.1720 -0.4413 5.9593 21 6 3.2949 0.2294 7.1219 22 8 3.0059 1.4098 7.1765 23 6 3.7797 -0.4660 8.3250 24 6 3.9451 0.1802 9.6060 25 6 4.3907 -0.6408 10.5496 26 16 4.6401 -2.2513 9.8982 27 6 4.1236 -1.7818 8.3433 28 1 -0.3632 0.5137 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.7517 -1.7714 -1.2058 32 1 1.6053 -0.2615 -2.1371 33 1 3.8531 0.4371 -1.3574 34 1 3.9995 -1.0727 -0.4262 35 1 3.4258 -1.7355 -3.1109 36 1 7.4713 -2.4878 -4.9637 37 1 2.2492 -1.6319 1.1524 38 1 1.9698 -1.5528 3.8298 39 1 3.6437 -1.1227 3.4038 40 1 3.3637 1.0734 4.5208 41 1 1.6899 0.6432 4.9468 42 1 3.4020 -1.3826 5.9158 43 1 3.7253 1.2233 9.7796 44 1 4.5781 -0.3561 11.5744 45 1 4.0765 -2.4397 7.4881 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699109804.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:30 Heat of formation + Delta-G solvation = -38.853382 kcal Electronic energy + Delta-G solvation = -25502.027929 eV Core-core repulsion = 21646.186206 eV Total energy + Delta-G solvation = -3855.841724 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.35365 -39.81716 -37.28850 -36.77922 -35.42092 -34.53998 -32.34521 -31.60452 -30.80837 -29.66593 -28.31662 -25.79475 -24.38033 -23.70760 -21.71904 -21.50166 -21.01690 -20.52496 -19.57982 -18.55822 -17.74474 -17.46477 -17.13485 -16.33505 -16.08231 -15.62729 -15.17408 -14.91400 -14.62504 -14.26587 -14.02983 -13.84784 -13.69872 -13.53789 -13.41458 -13.36884 -13.11568 -12.87256 -12.65473 -12.55791 -12.24526 -12.02997 -11.77039 -11.59113 -11.55882 -11.28789 -10.93001 -10.78328 -10.55867 -10.30076 -10.18763 -9.90778 -9.63234 -9.57340 -9.42378 -9.11581 -8.92612 -8.89858 -7.27783 -5.80434 -3.16579 0.28936 1.05607 1.43192 1.59264 2.54280 2.62901 3.03269 3.26938 3.32838 3.36021 3.41601 4.22175 4.35330 4.54981 4.59297 4.63715 4.72903 4.76837 4.81350 4.90796 5.09821 5.14493 5.21655 5.33393 5.45818 5.57725 5.58333 5.59340 5.60196 5.72118 5.75188 5.80759 5.88490 5.90911 6.04108 6.10496 6.18070 6.43380 6.65391 6.71142 7.10587 7.43317 7.87876 7.95510 8.14465 8.38347 9.17226 9.89416 10.09032 11.37887 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013564 B = 0.001765 C = 0.001621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2063.837506 B =15861.700250 C =17273.802929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.145 3.855 3 H 0.091 0.909 4 C -0.139 4.139 5 C 0.158 3.842 6 N -0.757 5.757 7 C -0.246 4.246 8 H 0.089 0.911 9 C 0.003 3.997 10 N -0.934 5.934 11 Si 0.887 3.113 12 H -0.284 1.284 13 H -0.291 1.291 14 H -0.278 1.278 15 N -0.719 5.719 16 C 0.519 3.481 17 O -0.539 6.539 18 C -0.156 4.156 19 C 0.136 3.864 20 N -0.727 5.727 21 C 0.577 3.423 22 O -0.530 6.530 23 C -0.153 4.153 24 C -0.086 4.086 25 C -0.236 4.236 26 S 0.188 5.812 27 C -0.214 4.214 28 H 0.058 0.942 29 H 0.066 0.934 30 H 0.055 0.945 31 H 0.067 0.933 32 H 0.079 0.921 33 H 0.027 0.973 34 H 0.026 0.974 35 H 0.360 0.640 36 H 0.260 0.740 37 H 0.402 0.598 38 H 0.099 0.901 39 H 0.103 0.897 40 H 0.081 0.919 41 H 0.079 0.921 42 H 0.398 0.602 43 H 0.155 0.845 44 H 0.171 0.829 45 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.358 -3.291 28.677 31.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.040 3.960 3 H 0.109 0.891 4 C -0.177 4.177 5 C 0.031 3.969 6 N -0.403 5.403 7 C -0.375 4.375 8 H 0.107 0.893 9 C -0.193 4.193 10 N -0.582 5.582 11 Si 0.717 3.283 12 H -0.211 1.211 13 H -0.217 1.217 14 H -0.204 1.204 15 N -0.371 5.371 16 C 0.304 3.696 17 O -0.415 6.415 18 C -0.197 4.197 19 C 0.012 3.988 20 N -0.379 5.379 21 C 0.362 3.638 22 O -0.408 6.408 23 C -0.171 4.171 24 C -0.114 4.114 25 C -0.371 4.371 26 S 0.453 5.547 27 C -0.352 4.352 28 H 0.077 0.923 29 H 0.085 0.915 30 H 0.074 0.926 31 H 0.086 0.914 32 H 0.097 0.903 33 H 0.045 0.955 34 H 0.044 0.956 35 H 0.193 0.807 36 H 0.070 0.930 37 H 0.237 0.763 38 H 0.118 0.882 39 H 0.122 0.878 40 H 0.099 0.901 41 H 0.097 0.903 42 H 0.233 0.767 43 H 0.173 0.827 44 H 0.188 0.812 45 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -11.020 -2.884 29.375 31.506 hybrid contribution -0.950 -0.382 -1.771 2.045 sum -11.970 -3.266 27.604 30.265 Atomic orbital electron populations 1.22163 0.95377 1.01942 1.02454 1.20967 0.93593 0.97843 0.83595 0.89105 1.22118 0.98076 1.00782 0.96759 1.20615 0.90138 0.96043 0.90144 1.42717 1.05320 1.66087 1.26163 1.19057 0.82225 1.29441 1.06823 0.89290 1.24698 0.95638 1.00690 0.98242 1.69708 1.11720 1.48207 1.28519 0.86515 0.80795 0.79444 0.81526 1.21055 1.21723 1.20411 1.46100 1.67080 1.14236 1.09640 1.20218 0.77668 0.87272 0.84413 1.90744 1.49881 1.15851 1.85072 1.21828 1.04321 0.99940 0.93578 1.21061 1.01561 0.94394 0.81759 1.45822 1.68334 1.14047 1.09721 1.17572 0.77671 0.86289 0.82288 1.90834 1.49547 1.15311 1.85059 1.20331 1.08091 0.93197 0.95513 1.21172 0.99000 1.01317 0.89952 1.25556 1.10219 0.96996 1.04321 1.83150 1.61671 1.10726 0.99119 1.25703 1.05763 0.99428 1.04297 0.92269 0.91530 0.92593 0.91427 0.90261 0.95510 0.95621 0.80712 0.93032 0.76340 0.88234 0.87838 0.90098 0.90310 0.76735 0.82737 0.81195 0.81197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.68 9.48 37.16 0.35 -1.33 16 2 C 0.14 1.75 2.57 -67.93 -0.17 1.57 16 3 H 0.09 1.28 7.58 -51.93 -0.39 0.89 16 4 C -0.14 -1.89 4.87 -26.73 -0.13 -2.02 16 5 C 0.16 2.90 6.15 -4.04 -0.02 2.88 16 6 N -0.76 -17.59 5.41 -59.91 -0.32 -17.92 16 7 C -0.25 -6.92 10.47 -15.06 -0.16 -7.08 16 8 H 0.09 2.70 8.06 -52.48 -0.42 2.28 16 9 C 0.00 0.09 5.50 -17.43 -0.10 -0.01 16 10 N -0.93 -29.21 13.97 55.49 0.78 -28.43 16 11 Si 0.89 21.77 27.74 -169.99 -4.71 17.06 16 12 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 13 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 14 H -0.28 -6.33 6.52 56.52 0.37 -5.96 16 15 N -0.72 -7.60 4.53 -53.80 -0.24 -7.85 16 16 C 0.52 5.94 7.79 -10.98 -0.09 5.86 16 17 O -0.54 -8.37 15.65 5.55 0.09 -8.28 16 18 C -0.16 -1.17 5.81 -27.88 -0.16 -1.33 16 19 C 0.14 1.33 4.96 -4.04 -0.02 1.31 16 20 N -0.73 -5.95 5.52 -61.46 -0.34 -6.29 16 21 C 0.58 6.30 7.79 -12.63 -0.10 6.20 16 22 O -0.53 -8.02 16.80 5.24 0.09 -7.93 16 23 C -0.15 -1.31 5.98 -104.63 -0.63 -1.93 16 24 C -0.09 -0.68 10.10 -39.02 -0.39 -1.08 16 25 C -0.24 -1.35 11.12 28.86 0.32 -1.03 16 26 S 0.19 0.91 23.02 -107.50 -2.48 -1.57 16 27 C -0.21 -1.24 10.38 29.93 0.31 -0.93 16 28 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 32 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.03 0.47 7.75 -51.92 -0.40 0.07 16 35 H 0.36 8.09 5.53 -40.82 -0.23 7.86 16 36 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 37 H 0.40 3.44 8.60 -40.82 -0.35 3.09 16 38 H 0.10 0.48 8.14 -51.92 -0.42 0.06 16 39 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.08 0.99 8.10 -51.93 -0.42 0.56 16 41 H 0.08 0.90 8.10 -51.93 -0.42 0.48 16 42 H 0.40 1.91 6.97 -40.82 -0.28 1.63 16 43 H 0.16 1.24 8.06 -52.48 -0.42 0.81 16 44 H 0.17 0.58 8.06 -52.49 -0.42 0.15 16 45 H 0.17 0.52 7.01 -52.49 -0.37 0.16 16 LS Contribution 393.62 15.07 5.93 5.93 Total: -1.00 -37.27 393.62 -8.89 -46.16 By element: Atomic # 1 Polarization: 14.71 SS G_CDS: -6.69 Total: 8.03 kcal Atomic # 6 Polarization: 2.07 SS G_CDS: -0.99 Total: 1.09 kcal Atomic # 7 Polarization: -60.35 SS G_CDS: -0.13 Total: -60.49 kcal Atomic # 8 Polarization: -16.39 SS G_CDS: 0.17 Total: -16.21 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.71 Total: 17.06 kcal Atomic # 16 Polarization: 0.91 SS G_CDS: -2.48 Total: -1.57 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -37.27 -8.89 -46.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699109804.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.304 kcal (2) G-P(sol) polarization free energy of solvation -37.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds