Wall clock time and date at job start Sat Apr 11 2020 05:40:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.47145 * 2 1 4 4 C 1.53006 * 109.47065 * 240.00872 * 2 1 3 5 5 C 1.52992 * 109.47159 * 174.99654 * 4 2 1 6 6 N 1.46506 * 109.47390 * 179.97438 * 5 4 2 7 7 C 1.36930 * 120.00358 * 180.02562 * 6 5 4 8 8 H 1.08007 * 119.99903 * 0.02562 * 7 6 5 9 9 C 1.38806 * 120.00165 * 180.02562 * 7 6 5 10 10 N 1.31627 * 120.00373 * 180.02562 * 9 7 6 11 11 Si 1.86801 * 119.99984 * 359.97438 * 9 7 6 12 12 H 1.48502 * 109.46663 * 90.00346 * 11 9 7 13 13 H 1.48498 * 109.47356 * 209.99797 * 11 9 7 14 14 H 1.48498 * 109.47143 * 330.00320 * 11 9 7 15 15 N 1.46497 * 109.47313 * 120.00897 * 2 1 3 16 16 C 1.34777 * 119.99525 * 274.99614 * 15 2 1 17 17 O 1.21283 * 120.00463 * 0.02562 * 16 15 2 18 18 C 1.50700 * 119.99675 * 179.72583 * 16 15 2 19 19 C 1.53004 * 109.47208 * 180.27843 * 18 16 15 20 20 N 1.46499 * 109.47198 * 179.97438 * 19 18 16 21 21 C 1.34777 * 120.00065 * 180.02562 * 20 19 18 22 22 O 1.21643 * 119.99891 * 359.97438 * 21 20 19 23 23 C 1.47185 * 120.00111 * 180.02562 * 21 20 19 24 24 C 1.44427 * 123.45964 * 179.72775 * 23 21 20 25 25 C 1.32772 * 113.08237 * 179.80546 * 24 23 21 26 26 S 1.75506 * 110.57312 * 0.44385 * 25 24 23 27 27 C 1.36011 * 123.46153 * 0.02562 * 23 21 20 28 28 H 1.08998 * 109.46617 * 299.99415 * 1 2 3 29 29 H 1.09003 * 109.47371 * 59.99288 * 1 2 3 30 30 H 1.09002 * 109.46839 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46733 * 294.99544 * 4 2 1 32 32 H 1.09003 * 109.47212 * 54.99369 * 4 2 1 33 33 H 1.08994 * 109.47570 * 300.00116 * 5 4 2 34 34 H 1.09008 * 109.47295 * 60.00253 * 5 4 2 35 35 H 0.97004 * 119.99536 * 0.02562 * 6 5 4 36 36 H 0.97001 * 120.00278 * 180.02562 * 10 9 7 37 37 H 0.97000 * 120.00580 * 95.00360 * 15 2 1 38 38 H 1.09009 * 109.47352 * 300.27556 * 18 16 15 39 39 H 1.08998 * 109.47585 * 60.27844 * 18 16 15 40 40 H 1.09000 * 109.46887 * 300.00372 * 19 18 16 41 41 H 1.08998 * 109.46846 * 59.99549 * 19 18 16 42 42 H 0.97000 * 119.99795 * 359.97438 * 20 19 18 43 43 H 1.08004 * 123.46087 * 0.02562 * 24 23 21 44 44 H 1.08002 * 124.71630 * 180.17753 * 25 24 23 45 45 H 1.08002 * 124.58764 * 0.02562 * 27 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2494 5 6 3.5648 -0.6131 -1.3139 6 7 4.0532 -1.3040 -2.5099 7 6 5.3952 -1.3408 -2.7793 8 1 6.0938 -0.8608 -2.1099 9 6 5.8579 -1.9950 -3.9127 10 7 7.1480 -2.0309 -4.1715 11 14 4.6498 -2.8259 -5.0702 12 1 4.2148 -1.8583 -6.1094 13 1 5.3066 -3.9883 -5.7202 14 1 3.4678 -3.2913 -4.3012 15 7 2.0184 -0.6908 1.1960 16 6 2.1472 -0.0185 2.3570 17 8 1.8583 1.1582 2.4118 18 6 2.6437 -0.7305 3.5889 19 6 2.6899 0.2511 4.7616 20 7 3.1720 -0.4413 5.9593 21 6 3.2949 0.2294 7.1219 22 8 3.0059 1.4098 7.1765 23 6 3.7797 -0.4660 8.3250 24 6 3.9451 0.1802 9.6060 25 6 4.3907 -0.6408 10.5496 26 16 4.6401 -2.2513 9.8982 27 6 4.1236 -1.7818 8.3433 28 1 -0.3632 0.5137 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.7517 -1.7714 -1.2058 32 1 1.6053 -0.2615 -2.1371 33 1 3.8531 0.4371 -1.3574 34 1 3.9995 -1.0727 -0.4262 35 1 3.4258 -1.7355 -3.1109 36 1 7.4713 -2.4878 -4.9637 37 1 2.2492 -1.6319 1.1524 38 1 1.9698 -1.5528 3.8298 39 1 3.6437 -1.1227 3.4038 40 1 3.3637 1.0734 4.5208 41 1 1.6899 0.6432 4.9468 42 1 3.4020 -1.3826 5.9158 43 1 3.7253 1.2233 9.7796 44 1 4.5781 -0.3561 11.5744 45 1 4.0765 -2.4397 7.4881 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699109804.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:29 Heat of formation + Delta-G solvation = -67.660571 kcal Electronic energy + Delta-G solvation = -25503.277103 eV Core-core repulsion = 21646.186206 eV Total energy + Delta-G solvation = -3857.090897 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.19760 -40.70781 -38.08286 -37.77835 -36.41206 -36.08540 -33.79545 -32.92227 -31.81712 -30.32279 -29.67863 -26.47528 -25.70913 -24.78587 -23.14009 -22.39824 -22.09580 -21.45154 -20.26887 -19.68176 -19.04592 -18.34648 -17.88442 -17.24247 -16.98405 -16.60832 -16.38173 -16.08325 -15.81499 -15.56472 -15.27476 -14.89805 -14.82659 -14.54447 -14.32755 -14.19786 -13.95156 -13.86623 -13.67027 -13.36363 -13.31885 -13.03941 -12.96623 -12.82493 -12.49956 -12.40205 -12.16706 -12.10747 -11.98629 -11.83288 -11.73442 -11.15961 -10.98936 -10.86148 -10.31512 -10.06162 -9.99101 -9.35332 -9.30877 -8.03163 -5.37901 -0.21844 0.63199 0.95789 0.97716 1.38653 1.43860 1.51199 1.65362 1.86041 2.29450 2.47226 2.49088 3.28105 3.45470 3.59139 3.85232 3.94554 3.99199 4.01102 4.07304 4.14027 4.27363 4.30371 4.45947 4.50181 4.56145 4.63636 4.76784 4.81915 4.82220 4.86359 4.91022 5.01939 5.14189 5.21482 5.24696 5.25785 5.29865 5.34024 5.59204 5.74243 6.20353 6.44578 6.59448 7.07558 7.13798 7.29073 7.82548 8.03398 9.18292 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013564 B = 0.001765 C = 0.001621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2063.837506 B =15861.700250 C =17273.802929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.148 3.852 3 H 0.063 0.937 4 C -0.122 4.122 5 C 0.154 3.846 6 N -0.757 5.757 7 C -0.240 4.240 8 H 0.050 0.950 9 C -0.068 4.068 10 N -0.985 5.985 11 Si 0.962 3.038 12 H -0.280 1.280 13 H -0.296 1.296 14 H -0.243 1.243 15 N -0.711 5.711 16 C 0.513 3.487 17 O -0.587 6.587 18 C -0.140 4.140 19 C 0.141 3.859 20 N -0.708 5.708 21 C 0.571 3.429 22 O -0.588 6.588 23 C -0.186 4.186 24 C -0.115 4.115 25 C -0.235 4.235 26 S 0.245 5.755 27 C -0.203 4.203 28 H 0.046 0.954 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.089 0.911 32 H 0.085 0.915 33 H 0.007 0.993 34 H 0.030 0.970 35 H 0.369 0.631 36 H 0.258 0.742 37 H 0.416 0.584 38 H 0.139 0.861 39 H 0.127 0.873 40 H 0.049 0.951 41 H 0.057 0.943 42 H 0.418 0.582 43 H 0.139 0.861 44 H 0.192 0.808 45 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.153 -6.903 29.156 32.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.043 3.957 3 H 0.082 0.918 4 C -0.160 4.160 5 C 0.028 3.972 6 N -0.403 5.403 7 C -0.371 4.371 8 H 0.068 0.932 9 C -0.259 4.259 10 N -0.635 5.635 11 Si 0.788 3.212 12 H -0.207 1.207 13 H -0.223 1.223 14 H -0.167 1.167 15 N -0.363 5.363 16 C 0.300 3.700 17 O -0.468 6.468 18 C -0.180 4.180 19 C 0.016 3.984 20 N -0.361 5.361 21 C 0.358 3.642 22 O -0.469 6.469 23 C -0.205 4.205 24 C -0.144 4.144 25 C -0.370 4.370 26 S 0.511 5.489 27 C -0.342 4.342 28 H 0.065 0.935 29 H 0.093 0.907 30 H 0.094 0.906 31 H 0.108 0.892 32 H 0.104 0.896 33 H 0.025 0.975 34 H 0.048 0.952 35 H 0.202 0.798 36 H 0.067 0.933 37 H 0.253 0.747 38 H 0.157 0.843 39 H 0.145 0.855 40 H 0.067 0.933 41 H 0.076 0.924 42 H 0.256 0.744 43 H 0.157 0.843 44 H 0.209 0.791 45 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -12.845 -6.560 29.881 33.179 hybrid contribution -0.285 0.749 -1.793 1.964 sum -13.130 -5.810 28.088 31.545 Atomic orbital electron populations 1.22073 0.93558 1.03121 1.02298 1.20813 0.94876 0.96406 0.83607 0.91832 1.21966 0.93960 1.02401 0.97705 1.20773 0.93733 0.94259 0.88437 1.42682 1.03450 1.66467 1.27744 1.19013 0.84035 1.28096 1.05915 0.93175 1.25621 0.97692 1.02119 1.00460 1.69908 1.14370 1.49857 1.29402 0.85310 0.79109 0.77814 0.78919 1.20678 1.22274 1.16680 1.46033 1.66526 1.14803 1.08977 1.20880 0.76777 0.86810 0.85513 1.90734 1.52029 1.18152 1.85850 1.21773 1.06373 0.99549 0.90321 1.20832 0.99590 0.94648 0.83298 1.45606 1.67258 1.14789 1.08465 1.18069 0.76822 0.85810 0.83481 1.90795 1.52303 1.17814 1.86006 1.20175 1.11089 0.94464 0.94728 1.21191 1.01017 1.01339 0.90818 1.25861 1.08655 0.97587 1.04928 1.83023 1.59633 1.08854 0.97438 1.26095 1.03411 0.98517 1.06183 0.93474 0.90725 0.90648 0.89221 0.89597 0.97482 0.95153 0.79790 0.93300 0.74706 0.84263 0.85542 0.93300 0.92413 0.74373 0.84302 0.79120 0.78292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.82 9.48 71.98 0.68 -2.14 16 2 C 0.15 3.34 2.57 44.99 0.12 3.45 16 3 H 0.06 1.81 7.58 -2.38 -0.02 1.79 16 4 C -0.12 -2.97 4.87 30.59 0.15 -2.82 16 5 C 0.15 5.48 6.15 86.38 0.53 6.02 16 6 N -0.76 -33.97 5.41 -343.46 -1.86 -35.83 16 7 C -0.24 -13.59 10.47 84.03 0.88 -12.71 16 8 H 0.05 3.16 8.06 -2.91 -0.02 3.14 16 9 C -0.07 -3.94 5.50 84.86 0.47 -3.48 16 10 N -0.99 -62.87 13.97 21.65 0.30 -62.57 16 11 Si 0.96 44.02 27.74 68.60 1.90 45.92 16 12 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 13 H -0.30 -13.74 7.11 99.48 0.71 -13.04 16 14 H -0.24 -9.61 6.52 99.48 0.65 -8.96 16 15 N -0.71 -13.60 4.53 -442.52 -2.00 -15.61 16 16 C 0.51 11.33 7.79 87.66 0.68 12.02 16 17 O -0.59 -18.89 15.65 -3.04 -0.05 -18.94 16 18 C -0.14 -1.82 5.81 29.85 0.17 -1.65 16 19 C 0.14 2.83 4.96 86.38 0.43 3.26 16 20 N -0.71 -11.23 5.52 -466.59 -2.58 -13.81 16 21 C 0.57 13.07 7.79 86.59 0.67 13.74 16 22 O -0.59 -19.48 16.80 -4.17 -0.07 -19.55 16 23 C -0.19 -3.16 5.98 -19.87 -0.12 -3.28 16 24 C -0.11 -1.91 10.10 22.67 0.23 -1.68 16 25 C -0.24 -2.40 11.12 66.64 0.74 -1.66 16 26 S 0.24 1.65 23.02 -56.49 -1.30 0.35 16 27 C -0.20 -1.87 10.38 67.30 0.70 -1.17 16 28 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 32 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 33 H 0.01 0.28 8.14 -2.39 -0.02 0.26 16 34 H 0.03 1.06 7.75 -2.38 -0.02 1.05 16 35 H 0.37 15.30 5.53 -92.71 -0.51 14.79 16 36 H 0.26 15.64 8.31 -92.71 -0.77 14.87 16 37 H 0.42 5.68 8.60 -92.71 -0.80 4.88 16 38 H 0.14 0.77 8.14 -2.38 -0.02 0.75 16 39 H 0.13 1.15 8.14 -2.39 -0.02 1.13 16 40 H 0.05 1.30 8.10 -2.39 -0.02 1.28 16 41 H 0.06 1.41 8.10 -2.39 -0.02 1.39 16 42 H 0.42 2.96 6.97 -92.71 -0.65 2.32 16 43 H 0.14 2.58 8.06 -2.91 -0.02 2.56 16 44 H 0.19 0.96 8.06 -2.91 -0.02 0.94 16 45 H 0.20 0.44 7.01 -2.91 -0.02 0.42 16 Total: -1.00 -87.00 393.62 -0.30 -87.31 By element: Atomic # 1 Polarization: 25.80 SS G_CDS: -0.99 Total: 24.82 kcal Atomic # 6 Polarization: 1.57 SS G_CDS: 6.34 Total: 7.91 kcal Atomic # 7 Polarization: -121.67 SS G_CDS: -6.14 Total: -127.81 kcal Atomic # 8 Polarization: -38.37 SS G_CDS: -0.12 Total: -38.49 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 1.90 Total: 45.92 kcal Atomic # 16 Polarization: 1.65 SS G_CDS: -1.30 Total: 0.35 kcal Total: -87.00 -0.30 -87.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699109804.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.645 kcal (2) G-P(sol) polarization free energy of solvation -87.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds