Wall clock time and date at job start Sat Apr 11 2020 05:40:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47166 * 2 1 4 4 C 1.52992 * 109.47448 * 120.00767 * 2 1 3 5 5 C 1.52997 * 109.47482 * 184.99813 * 4 2 1 6 6 N 1.46505 * 109.47212 * 179.97438 * 5 4 2 7 7 C 1.36936 * 119.99992 * 179.97438 * 6 5 4 8 8 H 1.08006 * 119.99834 * 0.02562 * 7 6 5 9 9 C 1.38801 * 120.00093 * 180.02562 * 7 6 5 10 10 N 1.31619 * 120.00176 * 0.02562 * 9 7 6 11 11 Si 1.86804 * 120.00265 * 180.02562 * 9 7 6 12 12 H 1.48503 * 109.46968 * 0.02562 * 11 9 7 13 13 H 1.48497 * 109.47299 * 119.99957 * 11 9 7 14 14 H 1.48495 * 109.47075 * 240.00117 * 11 9 7 15 15 N 1.46502 * 109.46969 * 240.00729 * 2 1 3 16 16 C 1.34773 * 120.00306 * 84.99801 * 15 2 1 17 17 O 1.21292 * 119.99815 * 0.02562 * 16 15 2 18 18 C 1.50694 * 120.00409 * 179.97438 * 16 15 2 19 19 C 1.52998 * 109.47517 * 179.97438 * 18 16 15 20 20 N 1.46502 * 109.47414 * 180.02562 * 19 18 16 21 21 C 1.34777 * 119.99990 * 180.02562 * 20 19 18 22 22 O 1.21633 * 120.00009 * 0.02562 * 21 20 19 23 23 C 1.47196 * 119.99928 * 180.02562 * 21 20 19 24 24 C 1.44424 * 123.45821 * 179.72946 * 23 21 20 25 25 C 1.32774 * 113.07929 * 179.80615 * 24 23 21 26 26 S 1.75505 * 110.57647 * 0.44003 * 25 24 23 27 27 C 1.36004 * 123.45849 * 0.02562 * 23 21 20 28 28 H 1.09000 * 109.47346 * 179.97438 * 1 2 3 29 29 H 1.09007 * 109.46964 * 299.99762 * 1 2 3 30 30 H 1.09004 * 109.47224 * 59.99257 * 1 2 3 31 31 H 1.09002 * 109.47103 * 64.99566 * 4 2 1 32 32 H 1.08998 * 109.46862 * 305.00378 * 4 2 1 33 33 H 1.09002 * 109.47153 * 59.99783 * 5 4 2 34 34 H 1.09001 * 109.46832 * 299.99974 * 5 4 2 35 35 H 0.96996 * 119.99606 * 0.02562 * 6 5 4 36 36 H 0.97001 * 120.00803 * 179.97438 * 10 9 7 37 37 H 0.97003 * 120.00235 * 265.00555 * 15 2 1 38 38 H 1.08997 * 109.47334 * 300.00478 * 18 16 15 39 39 H 1.09008 * 109.47061 * 60.00564 * 18 16 15 40 40 H 1.08994 * 109.47712 * 300.00322 * 19 18 16 41 41 H 1.09004 * 109.47103 * 60.00404 * 19 18 16 42 42 H 0.96999 * 120.00074 * 359.97438 * 20 19 18 43 43 H 1.07995 * 123.46269 * 359.97438 * 24 23 21 44 44 H 1.07997 * 124.71301 * 180.18208 * 25 24 23 45 45 H 1.08002 * 124.59444 * 0.02562 * 27 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7214 1.2491 5 6 3.5648 -0.6135 1.3135 6 7 4.0531 -1.3037 2.5099 7 6 5.3952 -1.3405 2.7793 8 1 6.0937 -0.8603 2.1100 9 6 5.8579 -1.9949 3.9126 10 7 5.0068 -2.5806 4.7280 11 14 7.6887 -2.0445 4.2805 12 1 8.4271 -1.3163 3.2176 13 1 7.9475 -1.3997 5.5929 14 1 8.1468 -3.4564 4.3238 15 7 2.0183 -0.6905 -1.1963 16 6 2.1470 -0.0181 -2.3572 17 8 1.8589 1.1589 -2.4114 18 6 2.6498 -0.7281 -3.5876 19 6 2.7005 0.2549 -4.7589 20 7 3.1887 -0.4356 -5.9552 21 6 3.3173 0.2369 -7.1161 22 8 3.0284 1.4171 -7.1705 23 6 3.8073 -0.4571 -8.3182 24 6 3.9682 0.1883 -9.6002 25 6 4.4276 -0.6290 -10.5403 26 16 4.6724 -2.2408 -9.8906 27 6 4.1496 -1.7732 -8.3371 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5140 -0.8899 31 1 1.7516 -1.7716 1.2053 32 1 1.6054 -0.2620 2.1368 33 1 3.8532 0.4368 1.3572 34 1 3.9994 -1.0729 0.4257 35 1 3.4258 -1.7353 3.1108 36 1 5.3301 -3.0383 5.5198 37 1 2.2489 -1.6317 -1.1529 38 1 3.6491 -1.1200 -3.3981 39 1 1.9775 -1.5504 -3.8328 40 1 1.7011 0.6463 -4.9483 41 1 3.3725 1.0775 -4.5141 42 1 3.4202 -1.3766 -5.9116 43 1 3.7410 1.2294 -9.7754 44 1 4.6196 -0.3428 -11.5638 45 1 4.0966 -2.4329 -7.4836 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699109806.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:32 Heat of formation + Delta-G solvation = -43.282873 kcal Electronic energy + Delta-G solvation = -25462.564513 eV Core-core repulsion = 21606.530712 eV Total energy + Delta-G solvation = -3856.033801 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.34053 -39.78107 -37.28309 -36.67669 -35.40196 -34.38198 -32.31474 -31.52314 -30.62920 -29.62317 -27.90281 -25.78656 -24.35907 -23.78255 -21.79716 -21.61872 -20.87684 -20.46399 -19.57077 -18.55889 -17.60492 -17.21081 -17.01884 -16.29213 -16.00538 -15.59747 -15.16096 -14.90818 -14.72819 -14.08265 -13.90163 -13.82029 -13.57829 -13.50909 -13.40428 -13.32049 -13.06752 -12.88639 -12.85170 -12.41333 -12.19192 -11.88108 -11.73207 -11.59605 -11.24166 -11.06320 -10.83190 -10.67660 -10.59133 -10.29732 -10.04753 -9.86999 -9.73765 -9.57674 -9.42136 -9.05558 -8.90516 -8.89586 -6.96038 -5.80314 -3.09219 0.28534 1.05136 1.42692 1.58889 2.57846 2.64539 3.03112 3.31235 3.40536 3.46591 3.48653 4.22120 4.36522 4.53893 4.59875 4.71113 4.74696 4.76833 4.90275 4.95347 5.14095 5.22896 5.32815 5.33015 5.51946 5.58875 5.59830 5.69065 5.71516 5.74215 5.80672 5.90519 6.00539 6.04765 6.20109 6.24932 6.30439 6.50605 6.77158 6.82916 7.10845 7.48902 7.67209 7.87938 8.18925 8.38651 9.49850 10.07421 10.41993 11.42558 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011384 B = 0.001807 C = 0.001618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2459.088523 B =15494.216425 C =17303.248870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.144 3.856 3 H 0.089 0.911 4 C -0.135 4.135 5 C 0.154 3.846 6 N -0.734 5.734 7 C -0.239 4.239 8 H 0.070 0.930 9 C -0.015 4.015 10 N -0.933 5.933 11 Si 0.907 3.093 12 H -0.280 1.280 13 H -0.291 1.291 14 H -0.291 1.291 15 N -0.718 5.718 16 C 0.518 3.482 17 O -0.540 6.540 18 C -0.156 4.156 19 C 0.136 3.864 20 N -0.727 5.727 21 C 0.576 3.424 22 O -0.530 6.530 23 C -0.153 4.153 24 C -0.086 4.086 25 C -0.236 4.236 26 S 0.188 5.812 27 C -0.214 4.214 28 H 0.055 0.945 29 H 0.066 0.934 30 H 0.057 0.943 31 H 0.068 0.932 32 H 0.079 0.921 33 H 0.018 0.982 34 H 0.018 0.982 35 H 0.383 0.617 36 H 0.255 0.745 37 H 0.402 0.598 38 H 0.103 0.897 39 H 0.099 0.901 40 H 0.079 0.921 41 H 0.080 0.920 42 H 0.398 0.602 43 H 0.155 0.845 44 H 0.171 0.829 45 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.440 -2.128 -29.761 30.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.040 3.960 3 H 0.107 0.893 4 C -0.173 4.173 5 C 0.026 3.974 6 N -0.378 5.378 7 C -0.370 4.370 8 H 0.088 0.912 9 C -0.211 4.211 10 N -0.582 5.582 11 Si 0.738 3.262 12 H -0.206 1.206 13 H -0.218 1.218 14 H -0.218 1.218 15 N -0.369 5.369 16 C 0.303 3.697 17 O -0.417 6.417 18 C -0.197 4.197 19 C 0.012 3.988 20 N -0.379 5.379 21 C 0.362 3.638 22 O -0.408 6.408 23 C -0.171 4.171 24 C -0.114 4.114 25 C -0.371 4.371 26 S 0.453 5.547 27 C -0.352 4.352 28 H 0.074 0.926 29 H 0.085 0.915 30 H 0.076 0.924 31 H 0.086 0.914 32 H 0.098 0.902 33 H 0.036 0.964 34 H 0.036 0.964 35 H 0.217 0.783 36 H 0.064 0.936 37 H 0.237 0.763 38 H 0.121 0.879 39 H 0.118 0.882 40 H 0.097 0.903 41 H 0.099 0.901 42 H 0.233 0.767 43 H 0.173 0.827 44 H 0.188 0.812 45 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -6.174 -1.728 -30.450 31.118 hybrid contribution 0.568 0.043 1.328 1.446 sum -5.605 -1.685 -29.122 29.704 Atomic orbital electron populations 1.22160 0.95422 1.01963 1.02366 1.20993 0.93573 0.97762 0.83709 0.89297 1.22063 0.98042 1.00763 0.96428 1.20633 0.90368 0.95648 0.90706 1.42376 1.05391 1.64966 1.25104 1.19274 0.83835 1.28415 1.05523 0.91189 1.24749 0.97755 1.00914 0.97658 1.69666 1.32707 1.40714 1.15127 0.86116 0.85032 0.77206 0.77842 1.20556 1.21817 1.21846 1.46114 1.66929 1.14246 1.09619 1.20210 0.77757 0.87273 0.84421 1.90743 1.50076 1.15831 1.85058 1.21824 1.04239 0.99949 0.93644 1.21062 1.01491 0.94407 0.81807 1.45828 1.68119 1.14065 1.09906 1.17572 0.77697 0.86285 0.82284 1.90831 1.49634 1.15317 1.84970 1.20335 1.08055 0.93227 0.95501 1.21171 0.98944 1.01358 0.89971 1.25555 1.10094 0.97054 1.04386 1.83151 1.61612 1.10605 0.99338 1.25702 1.05834 0.99377 1.04275 0.92554 0.91500 0.92406 0.91375 0.90226 0.96415 0.96439 0.78323 0.93554 0.76341 0.87911 0.88234 0.90287 0.90137 0.76742 0.82739 0.81199 0.81194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.80 9.48 37.16 0.35 -1.45 16 2 C 0.14 1.86 2.57 -67.93 -0.17 1.68 16 3 H 0.09 1.32 7.58 -51.93 -0.39 0.93 16 4 C -0.13 -1.99 4.87 -26.74 -0.13 -2.12 16 5 C 0.15 2.99 6.15 -4.04 -0.02 2.97 16 6 N -0.73 -18.31 5.60 -59.91 -0.34 -18.65 16 7 C -0.24 -6.68 9.99 -15.06 -0.15 -6.83 16 8 H 0.07 1.91 7.83 -52.48 -0.41 1.50 16 9 C -0.01 -0.43 5.50 -17.43 -0.10 -0.52 16 10 N -0.93 -27.99 13.06 55.49 0.72 -27.27 16 11 Si 0.91 22.31 29.55 -169.99 -5.02 17.28 16 12 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 13 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 14 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 15 N -0.72 -8.02 4.53 -53.81 -0.24 -8.26 16 16 C 0.52 6.13 7.79 -10.99 -0.09 6.05 16 17 O -0.54 -8.59 15.65 5.55 0.09 -8.50 16 18 C -0.16 -1.21 5.81 -27.89 -0.16 -1.37 16 19 C 0.14 1.35 4.96 -4.04 -0.02 1.33 16 20 N -0.73 -6.00 5.52 -61.46 -0.34 -6.34 16 21 C 0.58 6.32 7.79 -12.62 -0.10 6.22 16 22 O -0.53 -8.03 16.80 5.25 0.09 -7.94 16 23 C -0.15 -1.31 5.98 -104.63 -0.63 -1.93 16 24 C -0.09 -0.68 10.10 -39.02 -0.39 -1.08 16 25 C -0.24 -1.35 11.12 28.86 0.32 -1.03 16 26 S 0.19 0.90 23.02 -107.50 -2.48 -1.58 16 27 C -0.21 -1.24 10.38 29.93 0.31 -0.93 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.07 0.71 8.14 -51.92 -0.42 0.28 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.02 0.34 7.75 -51.93 -0.40 -0.07 16 35 H 0.38 9.98 7.67 -40.82 -0.31 9.67 16 36 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 37 H 0.40 3.71 8.60 -40.82 -0.35 3.36 16 38 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 39 H 0.10 0.51 8.14 -51.92 -0.42 0.09 16 40 H 0.08 0.92 8.10 -51.93 -0.42 0.50 16 41 H 0.08 0.99 8.10 -51.93 -0.42 0.57 16 42 H 0.40 1.93 6.97 -40.82 -0.28 1.65 16 43 H 0.16 1.23 8.06 -52.49 -0.42 0.81 16 44 H 0.17 0.57 8.06 -52.49 -0.42 0.15 16 45 H 0.17 0.52 7.01 -52.49 -0.37 0.15 16 LS Contribution 396.73 15.07 5.98 5.98 Total: -1.00 -36.37 396.73 -9.25 -45.62 By element: Atomic # 1 Polarization: 15.40 SS G_CDS: -6.73 Total: 8.67 kcal Atomic # 6 Polarization: 1.97 SS G_CDS: -0.98 Total: 0.99 kcal Atomic # 7 Polarization: -60.32 SS G_CDS: -0.19 Total: -60.51 kcal Atomic # 8 Polarization: -16.62 SS G_CDS: 0.17 Total: -16.45 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.28 kcal Atomic # 16 Polarization: 0.90 SS G_CDS: -2.48 Total: -1.58 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -36.37 -9.25 -45.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699109806.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.333 kcal (2) G-P(sol) polarization free energy of solvation -36.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds