Wall clock time and date at job start Sat Apr 11 2020 05:40:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.47393 * 2 1 4 4 C 1.53002 * 109.46743 * 120.00186 * 2 1 3 5 5 N 1.46898 * 109.46974 * 175.00083 * 4 2 1 6 6 C 1.46903 * 110.99957 * 179.97438 * 5 4 2 7 7 C 1.50701 * 109.47042 * 179.97438 * 6 5 4 8 8 O 1.21297 * 120.00146 * 0.02562 * 7 6 5 9 9 N 1.34776 * 120.00089 * 180.02562 * 7 6 5 10 10 C 1.37096 * 120.00158 * 180.02562 * 9 7 6 11 11 H 1.08004 * 119.99878 * 359.97438 * 10 9 7 12 12 C 1.38947 * 120.00207 * 179.97438 * 10 9 7 13 13 N 1.31414 * 119.99978 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 120.00178 * 179.97438 * 12 10 9 15 15 H 1.48496 * 109.47010 * 0.02562 * 14 12 10 16 16 H 1.48501 * 109.46853 * 120.00491 * 14 12 10 17 17 H 1.48498 * 109.47134 * 240.00054 * 14 12 10 18 18 N 1.46500 * 109.47283 * 239.99742 * 2 1 3 19 19 C 1.34771 * 120.00117 * 84.99973 * 18 2 1 20 20 O 1.21285 * 119.99770 * 0.02562 * 19 18 2 21 21 C 1.50699 * 120.00527 * 179.97438 * 19 18 2 22 22 C 1.52997 * 109.47356 * 180.02562 * 21 19 18 23 23 C 1.50704 * 109.46974 * 180.02562 * 22 21 19 24 24 C 1.38425 * 122.54253 * 89.99943 * 23 22 21 25 25 C 1.33383 * 114.92174 * 179.73216 * 24 23 22 26 26 S 1.75887 * 109.59638 * 359.97438 * 25 24 23 27 27 C 1.33390 * 122.53568 * 269.71278 * 23 22 21 28 28 H 1.08998 * 109.47393 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47198 * 300.00202 * 1 2 3 30 30 H 1.08998 * 109.46786 * 59.99897 * 1 2 3 31 31 H 1.09003 * 109.46583 * 294.99586 * 4 2 1 32 32 H 1.08997 * 109.47446 * 54.99889 * 4 2 1 33 33 H 1.00907 * 111.00087 * 56.04360 * 5 4 2 34 34 H 1.08999 * 109.47457 * 300.00085 * 6 5 4 35 35 H 1.08997 * 109.46664 * 60.00294 * 6 5 4 36 36 H 0.96996 * 119.99841 * 359.97438 * 9 7 6 37 37 H 0.97000 * 120.00429 * 179.97438 * 13 12 10 38 38 H 0.97005 * 119.99903 * 265.00634 * 18 2 1 39 39 H 1.09009 * 109.46749 * 60.00029 * 21 19 18 40 40 H 1.08994 * 109.46946 * 300.00955 * 21 19 18 41 41 H 1.08995 * 109.47094 * 60.00380 * 22 21 19 42 42 H 1.09002 * 109.47034 * 299.99927 * 22 21 19 43 43 H 1.08001 * 122.53542 * 359.75120 * 24 23 22 44 44 H 1.08000 * 125.20529 * 180.02562 * 25 24 23 45 45 H 1.08003 * 125.20243 * 0.24567 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 3.5040 -0.8267 1.1905 6 6 4.0303 -1.5150 2.3768 7 6 5.5316 -1.6046 2.2808 8 8 6.1066 -1.1403 1.3190 9 7 6.2353 -2.2005 3.2637 10 6 7.6011 -2.2816 3.1767 11 1 8.1131 -1.8682 2.3202 12 6 8.3267 -2.8955 4.1902 13 7 7.7037 -3.3990 5.2320 14 14 10.1875 -3.0066 4.0712 15 1 10.6418 -2.3692 2.8093 16 1 10.8002 -2.3053 5.2280 17 1 10.6000 -4.4331 4.0823 18 7 2.0184 -0.6907 -1.1961 19 6 2.1472 -0.0184 -2.3571 20 8 1.8591 1.1585 -2.4115 21 6 2.6501 -0.7286 -3.5874 22 6 2.7020 0.2546 -4.7585 23 6 3.2043 -0.4559 -5.9889 24 6 2.3565 -1.0884 -6.8818 25 6 2.9629 -1.6642 -7.9210 26 16 4.7000 -1.4157 -7.8023 27 6 4.4992 -0.5181 -6.3031 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.7516 -0.1583 2.1370 32 1 1.6053 -1.7198 1.2952 33 1 3.9280 0.0825 1.0825 34 1 3.7557 -0.9572 3.2722 35 1 3.6095 -2.5190 2.4309 36 1 5.7755 -2.5714 4.0330 37 1 8.2101 -3.8279 5.9394 38 1 2.2490 -1.6319 -1.1525 39 1 1.9778 -1.5510 -3.8325 40 1 3.6493 -1.1205 -3.3977 41 1 3.3744 1.0766 -4.5132 42 1 1.7028 0.6467 -4.9483 43 1 1.2852 -1.1135 -6.7473 44 1 2.4635 -2.2003 -8.7145 45 1 5.3016 -0.0831 -5.7256 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699405622.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:34 Heat of formation + Delta-G solvation = -76.294499 kcal Electronic energy + Delta-G solvation = -25811.402026 eV Core-core repulsion = 21953.936734 eV Total energy + Delta-G solvation = -3857.465292 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.89106 -40.12556 -39.19631 -37.76184 -36.02584 -35.06813 -33.85162 -33.25318 -31.90339 -29.92391 -28.94703 -26.75308 -26.33189 -24.59893 -23.54540 -22.09466 -21.23887 -21.02629 -19.90302 -19.59569 -18.58165 -18.10983 -17.77447 -17.33576 -16.61626 -16.48458 -16.32411 -16.04780 -15.89434 -15.32614 -15.20158 -14.90271 -14.56527 -14.38531 -14.09024 -14.02771 -13.84526 -13.54771 -13.39404 -13.17235 -13.08402 -12.99599 -12.85267 -12.78849 -12.75451 -12.62620 -12.40546 -12.12374 -11.94636 -11.81511 -11.60617 -11.51394 -10.80951 -10.35007 -10.01137 -9.93796 -9.69290 -9.34647 -9.27159 -8.47140 -5.95469 0.11810 0.79126 1.11401 1.36077 1.41634 1.55459 1.74396 1.77797 2.06187 2.28554 2.39107 2.91218 3.20491 3.52707 3.79633 3.87916 4.01263 4.14923 4.18871 4.26117 4.33909 4.35042 4.42729 4.53420 4.60098 4.63155 4.65598 4.67151 4.76154 4.78123 4.83926 4.90147 5.09231 5.14637 5.20234 5.29905 5.41018 5.54312 5.60736 5.65259 5.87705 6.09534 6.31885 6.60375 6.69802 7.13117 7.38419 7.57071 8.12646 8.70390 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.009055 B = 0.002200 C = 0.001814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3091.630435 B =12726.333809 C =15432.024998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.145 3.855 3 H 0.060 0.940 4 C 0.054 3.946 5 N -0.678 5.678 6 C 0.066 3.934 7 C 0.437 3.563 8 O -0.624 6.624 9 N -0.574 5.574 10 C -0.332 4.332 11 H 0.077 0.923 12 C -0.013 4.013 13 N -0.920 5.920 14 Si 0.991 3.009 15 H -0.274 1.274 16 H -0.271 1.271 17 H -0.270 1.270 18 N -0.703 5.703 19 C 0.511 3.489 20 O -0.590 6.590 21 C -0.127 4.127 22 C -0.037 4.037 23 C -0.105 4.105 24 C -0.140 4.140 25 C -0.209 4.209 26 S 0.085 5.915 27 C -0.226 4.226 28 H 0.074 0.926 29 H 0.078 0.922 30 H 0.046 0.954 31 H 0.059 0.941 32 H 0.098 0.902 33 H 0.339 0.661 34 H 0.066 0.934 35 H 0.110 0.890 36 H 0.397 0.603 37 H 0.277 0.723 38 H 0.413 0.587 39 H 0.116 0.884 40 H 0.096 0.904 41 H 0.061 0.939 42 H 0.078 0.922 43 H 0.157 0.843 44 H 0.187 0.813 45 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.798 0.932 -17.926 24.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.039 3.961 3 H 0.078 0.922 4 C -0.075 4.075 5 N -0.309 5.309 6 C -0.066 4.066 7 C 0.224 3.776 8 O -0.510 6.510 9 N -0.211 5.211 10 C -0.461 4.461 11 H 0.095 0.905 12 C -0.213 4.213 13 N -0.561 5.561 14 Si 0.815 3.185 15 H -0.199 1.199 16 H -0.197 1.197 17 H -0.195 1.195 18 N -0.353 5.353 19 C 0.299 3.701 20 O -0.471 6.471 21 C -0.167 4.167 22 C -0.077 4.077 23 C -0.118 4.118 24 C -0.170 4.170 25 C -0.345 4.345 26 S 0.349 5.651 27 C -0.361 4.361 28 H 0.093 0.907 29 H 0.097 0.903 30 H 0.065 0.935 31 H 0.077 0.923 32 H 0.116 0.884 33 H 0.157 0.843 34 H 0.084 0.916 35 H 0.128 0.872 36 H 0.231 0.769 37 H 0.087 0.913 38 H 0.249 0.751 39 H 0.135 0.865 40 H 0.114 0.886 41 H 0.080 0.920 42 H 0.097 0.903 43 H 0.175 0.825 44 H 0.204 0.796 45 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -15.301 0.955 -19.703 24.965 hybrid contribution -0.139 0.551 2.129 2.204 sum -15.440 1.506 -17.574 23.442 Atomic orbital electron populations 1.22043 0.93227 1.03194 1.02509 1.20933 0.94835 0.96178 0.84135 0.92155 1.22381 0.86788 1.02113 0.96211 1.60081 1.05386 1.26198 1.39270 1.21544 0.90244 1.01852 0.92992 1.20958 0.90709 0.82376 0.83514 1.90504 1.72865 1.53049 1.34628 1.41939 1.06823 1.51778 1.20599 1.19665 0.83129 1.36793 1.06536 0.90517 1.26011 1.04789 0.95893 0.94590 1.69670 1.38145 1.38573 1.09692 0.84899 0.77076 0.78329 0.78218 1.19916 1.19664 1.19534 1.45881 1.66000 1.14714 1.08736 1.21054 0.76521 0.86858 0.85646 1.90662 1.52659 1.17788 1.86024 1.21609 1.04032 0.99753 0.91267 1.19921 1.02049 0.96128 0.89636 1.19049 0.92649 1.01528 0.98564 1.20306 1.02012 1.00124 0.94522 1.25926 0.96078 1.07890 1.04568 1.84327 1.06938 1.52607 1.21240 1.25710 1.00561 1.08044 1.01818 0.90702 0.90271 0.93467 0.92328 0.88419 0.84327 0.91604 0.87171 0.76926 0.91317 0.75127 0.86539 0.88566 0.91977 0.90331 0.82509 0.79578 0.81790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.42 9.48 71.98 0.68 -1.74 16 2 C 0.14 2.96 2.82 44.99 0.13 3.09 16 3 H 0.06 1.56 7.58 -2.39 -0.02 1.54 16 4 C 0.05 1.05 5.24 86.30 0.45 1.50 16 5 N -0.68 -19.33 5.85 -517.93 -3.03 -22.36 16 6 C 0.07 2.07 6.17 85.56 0.53 2.60 16 7 C 0.44 20.17 7.82 87.66 0.69 20.85 16 8 O -0.62 -34.09 15.78 -3.08 -0.05 -34.14 16 9 N -0.57 -28.87 5.29 -306.98 -1.62 -30.50 16 10 C -0.33 -18.69 9.68 84.04 0.81 -17.88 16 11 H 0.08 4.65 7.16 -2.91 -0.02 4.63 16 12 C -0.01 -0.70 5.50 84.93 0.47 -0.23 16 13 N -0.92 -49.08 13.05 21.66 0.28 -48.80 16 14 Si 0.99 42.76 29.55 68.60 2.03 44.79 16 15 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 16 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 17 H -0.27 -11.13 7.11 99.48 0.71 -10.43 16 18 N -0.70 -14.77 4.80 -442.53 -2.12 -16.89 16 19 C 0.51 12.42 7.79 87.66 0.68 13.11 16 20 O -0.59 -18.75 15.64 -3.05 -0.05 -18.80 16 21 C -0.13 -2.36 5.68 29.85 0.17 -2.19 16 22 C -0.04 -0.73 4.76 29.85 0.14 -0.59 16 23 C -0.11 -1.95 5.06 -20.92 -0.11 -2.05 16 24 C -0.14 -2.14 9.98 21.22 0.21 -1.93 16 25 C -0.21 -2.94 11.23 66.72 0.75 -2.20 16 26 S 0.09 1.41 23.34 -56.49 -1.32 0.09 16 27 C -0.23 -4.33 10.98 66.72 0.73 -3.59 16 28 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.34 11.12 8.43 -89.69 -0.76 10.36 16 34 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 35 H 0.11 2.99 8.14 -2.39 -0.02 2.97 16 36 H 0.40 18.83 7.90 -92.71 -0.73 18.10 16 37 H 0.28 13.83 8.31 -92.71 -0.77 13.06 16 38 H 0.41 7.53 8.60 -92.70 -0.80 6.73 16 39 H 0.12 1.59 8.14 -2.38 -0.02 1.57 16 40 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 41 H 0.06 1.44 8.08 -2.39 -0.02 1.42 16 42 H 0.08 1.55 8.09 -2.39 -0.02 1.53 16 43 H 0.16 1.79 8.06 -2.91 -0.02 1.77 16 44 H 0.19 1.61 8.06 -2.91 -0.02 1.58 16 45 H 0.16 3.03 8.06 -2.91 -0.02 3.00 16 Total: -1.00 -72.05 398.40 -0.80 -72.85 By element: Atomic # 1 Polarization: 46.27 SS G_CDS: -1.26 Total: 45.01 kcal Atomic # 6 Polarization: 2.41 SS G_CDS: 6.34 Total: 8.75 kcal Atomic # 7 Polarization: -112.06 SS G_CDS: -6.49 Total: -118.55 kcal Atomic # 8 Polarization: -52.84 SS G_CDS: -0.10 Total: -52.94 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.79 kcal Atomic # 16 Polarization: 1.41 SS G_CDS: -1.32 Total: 0.09 kcal Total: -72.05 -0.80 -72.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699405622.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.440 kcal (2) G-P(sol) polarization free energy of solvation -72.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds