Wall clock time and date at job start Sat Apr 11 2020 05:40:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 109.46925 * 2 1 4 4 C 1.50701 * 109.46955 * 239.99940 * 2 1 3 5 5 O 1.21275 * 119.99632 * 240.00229 * 4 2 1 6 6 N 1.34769 * 119.99690 * 60.00305 * 4 2 1 7 7 C 1.46505 * 119.99686 * 179.97438 * 6 4 2 8 8 H 1.09002 * 109.47068 * 324.99893 * 7 6 4 9 9 C 1.53002 * 109.47411 * 84.99974 * 7 6 4 10 10 C 1.52997 * 109.47212 * 204.99833 * 7 6 4 11 11 N 1.46905 * 109.47325 * 54.99792 * 10 7 6 12 12 C 1.46899 * 111.00405 * 180.02562 * 11 10 7 13 13 C 1.50699 * 109.47325 * 180.02562 * 12 11 10 14 14 O 1.21293 * 119.99687 * 359.97438 * 13 12 11 15 15 N 1.34769 * 120.00001 * 179.97438 * 13 12 11 16 16 C 1.37097 * 119.99931 * 180.02562 * 15 13 12 17 17 H 1.07998 * 119.99837 * 0.02562 * 16 15 13 18 18 C 1.38950 * 120.00009 * 179.97438 * 16 15 13 19 19 N 1.31416 * 120.00045 * 180.02562 * 18 16 15 20 20 Si 1.86801 * 120.00033 * 0.02562 * 18 16 15 21 21 H 1.48496 * 109.47167 * 90.00073 * 20 18 16 22 22 H 1.48501 * 109.47135 * 209.99733 * 20 18 16 23 23 H 1.48504 * 109.47136 * 329.99701 * 20 18 16 24 24 C 1.50704 * 109.46834 * 120.00181 * 2 1 3 25 25 C 1.33393 * 125.19971 * 240.00035 * 24 2 1 26 26 C 1.38420 * 114.92098 * 179.97438 * 25 24 2 27 27 C 1.33395 * 114.91952 * 359.97438 * 26 25 24 28 28 S 1.75878 * 125.20637 * 59.69471 * 24 2 1 29 29 H 1.08996 * 109.47443 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47114 * 299.99993 * 1 2 3 31 31 H 1.09000 * 109.46977 * 59.99486 * 1 2 3 32 32 H 0.97000 * 120.00680 * 359.97438 * 6 4 2 33 33 H 1.08996 * 109.47407 * 180.02562 * 9 7 6 34 34 H 1.09000 * 109.46986 * 300.00092 * 9 7 6 35 35 H 1.09002 * 109.47075 * 59.99363 * 9 7 6 36 36 H 1.08998 * 109.47192 * 174.99746 * 10 7 6 37 37 H 1.09000 * 109.47325 * 294.99862 * 10 7 6 38 38 H 1.00899 * 110.99764 * 303.95647 * 11 10 7 39 39 H 1.09006 * 109.46590 * 299.99952 * 12 11 10 40 40 H 1.08996 * 109.46962 * 59.99644 * 12 11 10 41 41 H 0.96996 * 120.00362 * 0.02562 * 15 13 12 42 42 H 0.96993 * 120.00036 * 180.02562 * 19 18 16 43 43 H 1.07998 * 122.54034 * 359.97438 * 25 24 2 44 44 H 1.07998 * 122.54364 * 180.02562 * 26 25 24 45 45 H 1.08000 * 125.20050 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 8 2.7295 -1.6965 -1.1191 6 7 1.7068 -0.2499 -2.4545 7 6 2.1955 -0.9402 -3.6507 8 1 3.1949 -1.3321 -3.4612 9 6 1.2520 -2.0945 -3.9949 10 6 2.2468 0.0430 -4.8218 11 7 3.0569 1.2096 -4.4466 12 6 3.1281 2.1778 -5.5492 13 6 3.9658 3.3577 -5.1284 14 8 4.4550 3.3892 -4.0189 15 7 4.1714 4.3778 -5.9848 16 6 4.9339 5.4509 -5.6021 17 1 5.3702 5.4787 -4.6146 18 6 5.1464 6.5024 -6.4853 19 7 5.8777 7.5309 -6.1187 20 14 4.3924 6.4541 -8.1937 21 1 3.0472 7.0821 -8.1590 22 1 5.2619 7.1986 -9.1397 23 1 4.2688 5.0433 -8.6405 24 6 2.0323 -0.7105 1.2305 25 6 2.8024 -0.1646 2.1730 26 6 3.1395 -1.0124 3.2140 27 6 2.6426 -2.2466 3.1172 28 16 1.6866 -2.3838 1.6473 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.1488 0.5386 -2.5435 33 1 1.6159 -2.6083 -4.8845 34 1 1.2154 -2.7950 -3.1605 35 1 0.2526 -1.7026 -4.1842 36 1 2.6933 -0.4461 -5.6875 37 1 1.2358 0.3670 -5.0688 38 1 2.7004 1.6428 -3.6080 39 1 3.5805 1.7036 -6.4203 40 1 2.1231 2.5164 -5.8007 41 1 3.7799 4.3527 -6.8719 42 1 6.0257 8.2651 -6.7350 43 1 3.1376 0.8610 2.1274 44 1 3.7572 -0.6983 4.0424 45 1 2.8007 -3.0393 3.8334 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699421260.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:37 Heat of formation + Delta-G solvation = -36.232260 kcal Electronic energy + Delta-G solvation = -26479.212083 eV Core-core repulsion = 22623.484020 eV Total energy + Delta-G solvation = -3855.728063 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.25125 -38.57169 -37.93629 -36.77987 -34.39400 -34.19879 -33.68618 -31.69248 -30.99361 -28.68544 -27.80525 -25.25050 -24.97714 -23.60604 -23.10777 -21.37139 -20.45548 -19.51220 -19.42600 -18.43995 -17.70342 -16.95516 -16.29733 -16.00724 -15.75877 -15.43704 -15.25404 -14.87183 -14.44659 -14.23857 -14.05431 -13.78793 -13.32179 -13.20371 -13.10907 -12.89432 -12.81751 -12.70538 -12.44623 -12.29579 -12.27865 -11.99849 -11.95278 -11.83664 -11.71534 -11.65724 -11.21254 -11.06689 -10.76958 -10.62351 -10.00301 -9.89343 -9.60357 -9.22448 -8.78432 -8.63431 -8.45097 -8.24620 -8.19104 -6.33673 -3.85342 0.87845 1.55888 1.94395 2.53442 2.61556 3.00116 3.03687 3.06603 3.12697 3.70132 3.97258 4.07724 4.26665 4.49058 4.70542 4.74377 4.78970 4.93142 5.01791 5.03872 5.14072 5.19891 5.27061 5.33652 5.38437 5.44868 5.48172 5.49334 5.51996 5.58328 5.71758 5.74511 5.88068 5.89210 5.98688 6.02219 6.17149 6.36131 6.36576 6.98568 7.33111 7.47002 7.55250 8.10883 8.11531 8.56727 8.92147 9.39386 9.79275 10.79401 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.016382 B = 0.002219 C = 0.002029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1708.761939 B =12612.531704 C =13795.174797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.044 4.044 3 H 0.118 0.882 4 C 0.521 3.479 5 O -0.524 6.524 6 N -0.721 5.721 7 C 0.145 3.855 8 H 0.098 0.902 9 C -0.161 4.161 10 C 0.051 3.949 11 N -0.667 5.667 12 C 0.047 3.953 13 C 0.448 3.552 14 O -0.564 6.564 15 N -0.590 5.590 16 C -0.305 4.305 17 H 0.120 0.880 18 C 0.041 3.959 19 N -0.881 5.881 20 Si 0.880 3.120 21 H -0.271 1.271 22 H -0.276 1.276 23 H -0.269 1.269 24 C -0.155 4.155 25 C -0.137 4.137 26 C -0.134 4.134 27 C -0.225 4.225 28 S 0.130 5.870 29 H 0.062 0.938 30 H 0.073 0.927 31 H 0.068 0.932 32 H 0.397 0.603 33 H 0.067 0.933 34 H 0.062 0.938 35 H 0.055 0.945 36 H 0.087 0.913 37 H 0.032 0.968 38 H 0.349 0.651 39 H 0.088 0.912 40 H 0.045 0.955 41 H 0.370 0.630 42 H 0.274 0.726 43 H 0.140 0.860 44 H 0.138 0.862 45 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.635 -18.903 9.696 26.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.068 4.068 3 H 0.136 0.864 4 C 0.306 3.694 5 O -0.399 6.399 6 N -0.374 5.374 7 C 0.040 3.960 8 H 0.116 0.884 9 C -0.220 4.220 10 C -0.079 4.079 11 N -0.300 5.300 12 C -0.085 4.085 13 C 0.234 3.766 14 O -0.446 6.446 15 N -0.229 5.229 16 C -0.434 4.434 17 H 0.137 0.863 18 C -0.162 4.162 19 N -0.520 5.520 20 Si 0.707 3.293 21 H -0.197 1.197 22 H -0.201 1.201 23 H -0.195 1.195 24 C -0.273 4.273 25 C -0.168 4.168 26 C -0.165 4.165 27 C -0.361 4.361 28 S 0.394 5.606 29 H 0.081 0.919 30 H 0.092 0.908 31 H 0.087 0.913 32 H 0.231 0.769 33 H 0.086 0.914 34 H 0.081 0.919 35 H 0.074 0.926 36 H 0.106 0.894 37 H 0.050 0.950 38 H 0.169 0.831 39 H 0.107 0.893 40 H 0.063 0.937 41 H 0.203 0.797 42 H 0.084 0.916 43 H 0.158 0.842 44 H 0.155 0.845 45 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -14.914 -20.870 9.652 27.407 hybrid contribution -0.669 2.136 -0.859 2.397 sum -15.583 -18.733 8.793 25.905 Atomic orbital electron populations 1.21845 0.91778 1.03002 1.03384 1.19856 0.97476 1.00376 0.89046 0.86411 1.20333 0.80098 0.84658 0.84336 1.90735 1.36764 1.25959 1.86432 1.45965 1.53819 1.32040 1.05528 1.21033 0.99411 0.92018 0.83533 0.88356 1.22144 0.99309 0.98287 1.02226 1.22311 0.95676 0.92369 0.97576 1.60001 1.55462 1.08402 1.06120 1.21729 0.98639 0.93128 0.95048 1.19694 0.86128 0.84159 0.86618 1.90574 1.53036 1.79677 1.21271 1.42204 1.47622 1.18872 1.14237 1.19431 1.26426 0.94480 1.03078 0.86282 1.25049 0.97183 0.95576 0.98381 1.69621 1.37800 1.08162 1.36460 0.86665 0.79897 0.78395 0.84385 1.19665 1.20143 1.19482 1.23868 1.05885 0.97514 1.00042 1.20129 1.00208 1.01758 0.94656 1.20095 1.02862 0.93126 1.00427 1.25667 1.06565 1.01508 1.02331 1.84152 1.49807 1.10069 1.16543 0.91942 0.90777 0.91308 0.76893 0.91414 0.91870 0.92578 0.89442 0.94952 0.83128 0.89335 0.93734 0.79698 0.91585 0.84240 0.84451 0.82170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.00 9.01 37.16 0.33 -0.66 16 2 C -0.04 -0.43 3.10 -92.92 -0.29 -0.72 16 3 H 0.12 1.04 8.08 -51.93 -0.42 0.62 16 4 C 0.52 6.24 7.09 -10.99 -0.08 6.16 16 5 O -0.52 -8.17 14.93 5.56 0.08 -8.09 16 6 N -0.72 -7.20 4.25 -53.80 -0.23 -7.42 16 7 C 0.14 1.51 2.88 -67.93 -0.20 1.32 16 8 H 0.10 1.32 7.58 -51.93 -0.39 0.92 16 9 C -0.16 -1.37 9.48 37.16 0.35 -1.02 16 10 C 0.05 0.53 5.30 -3.82 -0.02 0.51 16 11 N -0.67 -9.73 6.12 -115.06 -0.70 -10.43 16 12 C 0.05 0.74 6.17 -4.98 -0.03 0.71 16 13 C 0.45 9.96 7.82 -10.99 -0.09 9.88 16 14 O -0.56 -14.97 15.78 5.55 0.09 -14.88 16 15 N -0.59 -13.81 5.09 -10.97 -0.06 -13.87 16 16 C -0.31 -8.57 10.16 -14.93 -0.15 -8.72 16 17 H 0.12 3.83 7.39 -52.49 -0.39 3.44 16 18 C 0.04 1.12 5.50 -17.47 -0.10 1.02 16 19 N -0.88 -25.56 13.96 55.50 0.77 -24.79 16 20 Si 0.88 19.09 27.74 -169.99 -4.71 14.38 16 21 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 22 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 23 H -0.27 -5.31 6.52 56.52 0.37 -4.95 16 24 C -0.16 -1.73 4.60 -36.00 -0.17 -1.89 16 25 C -0.14 -1.48 10.01 -41.21 -0.41 -1.90 16 26 C -0.13 -1.34 10.18 -41.21 -0.42 -1.76 16 27 C -0.22 -2.19 11.23 29.04 0.33 -1.86 16 28 S 0.13 1.39 22.19 -107.50 -2.39 -0.99 16 29 H 0.06 0.46 7.99 -51.93 -0.42 0.05 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.37 7.56 -51.93 -0.39 -0.02 16 32 H 0.40 3.11 7.57 -40.82 -0.31 2.80 16 33 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16 38 H 0.35 5.19 7.28 -39.29 -0.29 4.90 16 39 H 0.09 1.26 8.14 -51.93 -0.42 0.83 16 40 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 41 H 0.37 7.56 5.76 -40.82 -0.24 7.33 16 42 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 43 H 0.14 1.33 8.06 -52.49 -0.42 0.91 16 44 H 0.14 1.09 8.06 -52.49 -0.42 0.66 16 45 H 0.16 1.17 8.06 -52.49 -0.42 0.75 16 LS Contribution 390.14 15.07 5.88 5.88 Total: -1.00 -35.26 390.14 -8.85 -44.12 By element: Atomic # 1 Polarization: 21.70 SS G_CDS: -6.66 Total: 15.04 kcal Atomic # 6 Polarization: 1.99 SS G_CDS: -0.93 Total: 1.06 kcal Atomic # 7 Polarization: -56.30 SS G_CDS: -0.21 Total: -56.51 kcal Atomic # 8 Polarization: -23.14 SS G_CDS: 0.17 Total: -22.97 kcal Atomic # 14 Polarization: 19.09 SS G_CDS: -4.71 Total: 14.38 kcal Atomic # 16 Polarization: 1.39 SS G_CDS: -2.39 Total: -0.99 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -35.26 -8.85 -44.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699421260.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.883 kcal (2) G-P(sol) polarization free energy of solvation -35.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds