Wall clock time and date at job start Sat Apr 11 2020 05:40:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08995 * 109.47566 * 2 1 4 4 C 1.53006 * 109.47268 * 120.00134 * 2 1 3 5 5 N 1.46898 * 109.47138 * 174.99901 * 4 2 1 6 6 C 1.46906 * 110.99888 * 180.02562 * 5 4 2 7 7 C 1.50699 * 109.47140 * 179.97438 * 6 5 4 8 8 O 1.21289 * 119.99678 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99614 * 180.02562 * 7 6 5 10 10 C 1.37097 * 119.99518 * 180.02562 * 9 7 6 11 11 H 1.08003 * 120.00058 * 359.97438 * 10 9 7 12 12 C 1.38949 * 120.00085 * 179.97438 * 10 9 7 13 13 N 1.31416 * 119.99807 * 359.97438 * 12 10 9 14 14 Si 1.86793 * 120.00409 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.46949 * 60.00154 * 14 12 10 16 16 H 1.48496 * 109.47431 * 179.97438 * 14 12 10 17 17 H 1.48497 * 109.47561 * 300.00356 * 14 12 10 18 18 N 1.46500 * 109.47187 * 239.99643 * 2 1 3 19 19 C 1.34783 * 119.99492 * 85.00558 * 18 2 1 20 20 O 1.21280 * 120.00245 * 359.97438 * 19 18 2 21 21 C 1.50698 * 120.00020 * 180.02562 * 19 18 2 22 22 H 1.09002 * 109.47821 * 59.99138 * 21 19 18 23 23 C 1.53003 * 109.46851 * 299.99535 * 21 19 18 24 24 C 1.50694 * 109.47278 * 179.97438 * 21 19 18 25 25 C 1.33387 * 125.20229 * 239.71583 * 24 21 19 26 26 C 1.38431 * 114.91988 * 179.86292 * 25 24 21 27 27 C 1.33385 * 114.91950 * 0.42578 * 26 25 24 28 28 S 1.75883 * 109.59459 * 359.77502 * 27 26 25 29 29 H 1.09002 * 109.47076 * 300.00066 * 1 2 3 30 30 H 1.09000 * 109.47314 * 59.99687 * 1 2 3 31 31 H 1.09004 * 109.47456 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.46770 * 54.99847 * 4 2 1 33 33 H 1.08995 * 109.47019 * 295.00060 * 4 2 1 34 34 H 1.00904 * 110.99913 * 303.95145 * 5 4 2 35 35 H 1.09004 * 109.47040 * 299.99934 * 6 5 4 36 36 H 1.09000 * 109.47033 * 59.99886 * 6 5 4 37 37 H 0.96996 * 120.00269 * 359.97438 * 9 7 6 38 38 H 0.97002 * 120.00022 * 179.97438 * 13 12 10 39 39 H 0.96993 * 120.00698 * 265.00113 * 18 2 1 40 40 H 1.08998 * 109.47260 * 60.00320 * 23 21 19 41 41 H 1.09002 * 109.47235 * 179.97438 * 23 21 19 42 42 H 1.09000 * 109.47134 * 299.99851 * 23 21 19 43 43 H 1.07995 * 122.54254 * 0.02562 * 25 24 21 44 44 H 1.08005 * 122.53618 * 180.20492 * 26 25 24 45 45 H 1.07999 * 125.20052 * 179.75103 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 3.5040 -0.8267 1.1904 6 6 4.0303 -1.5160 2.3762 7 6 5.5315 -1.6056 2.2801 8 8 6.1065 -1.1405 1.3187 9 7 6.2351 -2.2025 3.2626 10 6 7.6009 -2.2835 3.1754 11 1 8.1129 -1.8694 2.3194 12 6 8.3265 -2.8983 4.1885 13 7 7.7035 -3.4018 5.2303 14 14 10.1873 -3.0094 4.0695 15 1 10.7611 -1.6417 3.9967 16 1 10.7193 -3.7056 5.2684 17 1 10.5610 -3.7685 2.8491 18 7 2.0183 -0.6907 -1.1961 19 6 2.1471 -0.0182 -2.3571 20 8 1.8583 1.1584 -2.4117 21 6 2.6489 -0.7287 -3.5877 22 1 1.9760 -1.5506 -3.8326 23 6 4.0513 -1.2797 -3.3222 24 6 2.6992 0.2395 -4.7414 25 6 2.0284 0.1065 -5.8866 26 6 2.2294 1.1253 -6.8020 27 6 3.0704 2.0810 -6.4036 28 16 3.6573 1.7138 -4.7867 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 1.6053 -1.7198 1.2951 33 1 1.7516 -0.1584 2.1370 34 1 3.7995 -1.2885 0.3432 35 1 3.7557 -0.9589 3.2720 36 1 3.6094 -2.5201 2.4294 37 1 5.7753 -2.5740 4.0315 38 1 8.2099 -3.8313 5.9374 39 1 2.2490 -1.6318 -1.1526 40 1 4.0146 -1.9802 -2.4879 41 1 4.4141 -1.7941 -4.2121 42 1 4.7242 -0.4579 -3.0774 43 1 1.3757 -0.7310 -6.0837 44 1 1.7449 1.1431 -7.7671 45 1 3.3487 2.9474 -6.9851 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699421261.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:39 Heat of formation + Delta-G solvation = -43.477137 kcal Electronic energy + Delta-G solvation = -26558.899261 eV Core-core repulsion = 22702.857037 eV Total energy + Delta-G solvation = -3856.042225 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.21718 -38.39384 -37.90035 -36.70551 -34.31877 -34.14246 -33.60782 -31.26382 -30.91603 -28.61559 -27.62788 -25.20344 -24.92590 -23.63787 -23.16965 -21.28220 -20.43815 -19.49215 -19.29296 -17.98208 -17.67168 -16.88680 -16.29595 -16.03614 -15.69243 -15.39348 -14.97080 -14.62336 -14.47068 -14.22487 -13.93309 -13.76266 -13.47562 -13.21696 -13.10270 -12.84022 -12.66197 -12.49499 -12.38375 -12.31510 -11.98530 -11.82060 -11.76718 -11.63861 -11.62062 -11.48025 -11.07134 -10.98163 -10.67278 -10.45902 -10.23437 -9.85805 -9.52187 -9.19177 -8.76844 -8.49968 -8.41585 -8.11947 -7.98519 -6.43862 -3.84778 0.90687 1.60311 2.00572 2.56372 2.59600 3.10312 3.18638 3.24601 3.28966 3.87683 4.02463 4.25439 4.31241 4.58346 4.77544 4.86057 4.94460 4.97603 5.01509 5.15833 5.19922 5.25141 5.35654 5.40451 5.41194 5.52401 5.54294 5.59053 5.60881 5.73691 5.90875 5.93659 5.95652 6.00596 6.05657 6.16969 6.23015 6.35862 6.40494 7.11597 7.36366 7.52973 7.56711 8.03620 8.13333 8.58706 9.15526 9.51619 10.02966 10.73719 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013809 B = 0.002353 C = 0.002086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2027.184034 B =11895.000167 C =13418.021851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.145 3.855 3 H 0.098 0.902 4 C 0.050 3.950 5 N -0.666 5.666 6 C 0.050 3.950 7 C 0.439 3.561 8 O -0.582 6.582 9 N -0.563 5.563 10 C -0.300 4.300 11 H 0.102 0.898 12 C 0.022 3.978 13 N -0.902 5.902 14 Si 0.931 3.069 15 H -0.273 1.273 16 H -0.284 1.284 17 H -0.274 1.274 18 N -0.721 5.721 19 C 0.520 3.480 20 O -0.525 6.525 21 C -0.041 4.041 22 H 0.111 0.889 23 C -0.146 4.146 24 C -0.157 4.157 25 C -0.142 4.142 26 C -0.138 4.138 27 C -0.228 4.228 28 S 0.151 5.849 29 H 0.067 0.933 30 H 0.062 0.938 31 H 0.055 0.945 32 H 0.032 0.968 33 H 0.087 0.913 34 H 0.347 0.653 35 H 0.087 0.913 36 H 0.043 0.957 37 H 0.392 0.608 38 H 0.272 0.728 39 H 0.397 0.603 40 H 0.071 0.929 41 H 0.072 0.928 42 H 0.068 0.932 43 H 0.135 0.865 44 H 0.135 0.865 45 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.720 2.736 -16.770 23.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.040 3.960 3 H 0.116 0.884 4 C -0.080 4.080 5 N -0.299 5.299 6 C -0.083 4.083 7 C 0.225 3.775 8 O -0.466 6.466 9 N -0.200 5.200 10 C -0.429 4.429 11 H 0.120 0.880 12 C -0.179 4.179 13 N -0.543 5.543 14 Si 0.758 3.242 15 H -0.199 1.199 16 H -0.210 1.210 17 H -0.199 1.199 18 N -0.373 5.373 19 C 0.305 3.695 20 O -0.400 6.400 21 C -0.064 4.064 22 H 0.129 0.871 23 C -0.203 4.203 24 C -0.275 4.275 25 C -0.173 4.173 26 C -0.169 4.169 27 C -0.365 4.365 28 S 0.416 5.584 29 H 0.086 0.914 30 H 0.081 0.919 31 H 0.074 0.926 32 H 0.050 0.950 33 H 0.105 0.895 34 H 0.167 0.833 35 H 0.105 0.895 36 H 0.061 0.939 37 H 0.225 0.775 38 H 0.082 0.918 39 H 0.231 0.769 40 H 0.090 0.910 41 H 0.091 0.909 42 H 0.087 0.913 43 H 0.153 0.847 44 H 0.153 0.847 45 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -14.341 5.179 -16.005 22.105 hybrid contribution -0.573 -2.423 -0.585 2.557 sum -14.914 2.757 -16.590 22.478 Atomic orbital electron populations 1.22143 0.95070 1.02012 1.02749 1.21039 0.93369 0.98531 0.83045 0.88388 1.22308 0.88841 0.98963 0.97857 1.60020 1.07477 1.57501 1.04933 1.21699 0.95193 0.96917 0.94485 1.19790 0.88050 0.84325 0.85365 1.90528 1.71097 1.51480 1.33526 1.41856 1.07417 1.50793 1.19890 1.19650 0.81516 1.35161 1.06609 0.87974 1.25265 1.00712 0.96757 0.95194 1.69604 1.36819 1.38502 1.09388 0.85915 0.82101 0.78641 0.77557 1.19857 1.20973 1.19909 1.45971 1.67712 1.13869 1.09725 1.20361 0.77485 0.87400 0.84271 1.90732 1.49054 1.15531 1.84715 1.19839 1.00189 0.96354 0.90061 0.87097 1.21876 0.93474 1.02036 1.02957 1.23932 1.04571 1.00294 0.98740 1.20016 1.02625 1.01147 0.93516 1.20037 1.01020 0.94749 1.01129 1.25734 1.05707 1.04813 1.00199 1.84526 1.44040 1.18154 1.11642 0.91397 0.91929 0.92586 0.95007 0.89455 0.83323 0.89462 0.93885 0.77468 0.91807 0.76887 0.91019 0.90897 0.91251 0.84684 0.84691 0.82193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.46 9.48 37.15 0.35 -1.11 16 2 C 0.14 1.59 2.88 -67.93 -0.20 1.39 16 3 H 0.10 1.35 7.58 -51.93 -0.39 0.96 16 4 C 0.05 0.56 5.30 -3.82 -0.02 0.54 16 5 N -0.67 -10.18 6.12 -115.05 -0.70 -10.88 16 6 C 0.05 0.84 6.17 -4.97 -0.03 0.81 16 7 C 0.44 10.14 7.82 -10.99 -0.09 10.06 16 8 O -0.58 -15.53 15.78 5.55 0.09 -15.45 16 9 N -0.56 -14.03 5.29 -10.96 -0.06 -14.09 16 10 C -0.30 -8.28 9.68 -14.93 -0.14 -8.42 16 11 H 0.10 2.96 7.16 -52.48 -0.38 2.58 16 12 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 13 N -0.90 -24.27 13.05 55.50 0.72 -23.55 16 14 Si 0.93 20.90 29.55 -169.99 -5.02 15.88 16 15 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 16 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 17 H -0.27 -6.09 7.11 56.52 0.40 -5.68 16 18 N -0.72 -7.49 4.25 -53.81 -0.23 -7.72 16 19 C 0.52 6.36 7.09 -10.98 -0.08 6.28 16 20 O -0.53 -8.29 14.92 5.56 0.08 -8.20 16 21 C -0.04 -0.41 3.10 -92.93 -0.29 -0.70 16 22 H 0.11 0.81 8.08 -51.93 -0.42 0.39 16 23 C -0.15 -1.41 9.01 37.16 0.33 -1.08 16 24 C -0.16 -1.77 4.60 -36.01 -0.17 -1.93 16 25 C -0.14 -1.42 10.01 -41.21 -0.41 -1.84 16 26 C -0.14 -1.33 10.18 -41.21 -0.42 -1.75 16 27 C -0.23 -2.31 11.23 29.04 0.33 -1.98 16 28 S 0.15 1.83 22.18 -107.50 -2.38 -0.56 16 29 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.03 0.31 8.14 -51.93 -0.42 -0.12 16 33 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.35 5.36 7.28 -39.29 -0.29 5.07 16 35 H 0.09 1.37 8.14 -51.93 -0.42 0.94 16 36 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.39 9.32 7.90 -40.82 -0.32 9.00 16 38 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 39 H 0.40 3.31 7.57 -40.82 -0.31 3.00 16 40 H 0.07 0.63 7.56 -51.93 -0.39 0.24 16 41 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.07 0.82 8.00 -51.93 -0.42 0.40 16 43 H 0.14 1.05 8.06 -52.49 -0.42 0.63 16 44 H 0.14 0.98 8.06 -52.48 -0.42 0.55 16 45 H 0.16 1.24 8.06 -52.49 -0.42 0.82 16 LS Contribution 393.26 15.07 5.93 5.93 Total: -1.00 -33.55 393.26 -9.20 -42.75 By element: Atomic # 1 Polarization: 21.82 SS G_CDS: -6.70 Total: 15.12 kcal Atomic # 6 Polarization: 1.70 SS G_CDS: -0.92 Total: 0.77 kcal Atomic # 7 Polarization: -55.98 SS G_CDS: -0.27 Total: -56.24 kcal Atomic # 8 Polarization: -23.82 SS G_CDS: 0.17 Total: -23.65 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Atomic # 16 Polarization: 1.83 SS G_CDS: -2.38 Total: -0.56 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -33.55 -9.20 -42.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699421261.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.726 kcal (2) G-P(sol) polarization free energy of solvation -33.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds