Wall clock time and date at job start Sat Apr 11 2020 05:40:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.46864 * 2 1 4 4 N 1.46500 * 109.47166 * 119.99487 * 2 1 3 5 5 C 1.34779 * 119.99887 * 275.00846 * 4 2 1 6 6 O 1.21702 * 120.00223 * 359.97438 * 5 4 2 7 7 C 1.46581 * 119.99721 * 179.97438 * 5 4 2 8 8 C 1.36652 * 125.45473 * 179.97438 * 7 5 4 9 9 C 1.37476 * 113.29327 * 179.97438 * 8 7 5 10 10 C 1.33818 * 115.10371 * 0.02562 * 9 8 7 11 11 S 1.70621 * 110.95323 * 359.75517 * 10 9 8 12 12 C 1.50692 * 109.47359 * 239.99919 * 2 1 3 13 13 O 1.21288 * 119.99950 * 254.24925 * 12 2 1 14 14 N 1.34777 * 120.00584 * 74.24790 * 12 2 1 15 15 C 1.46506 * 119.99531 * 3.63148 * 14 12 2 16 16 C 1.46494 * 120.00115 * 183.63818 * 14 12 2 17 17 C 1.53001 * 109.47620 * 90.00109 * 16 14 12 18 18 C 1.52993 * 109.47662 * 179.97438 * 17 16 14 19 19 N 1.46499 * 109.47480 * 179.97438 * 18 17 16 20 20 C 1.36932 * 120.00054 * 180.02562 * 19 18 17 21 21 H 1.07999 * 120.00555 * 359.97438 * 20 19 18 22 22 C 1.38814 * 119.99886 * 179.97438 * 20 19 18 23 23 N 1.31618 * 120.00006 * 0.02562 * 22 20 19 24 24 Si 1.86805 * 119.99941 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47081 * 90.00039 * 24 22 20 26 26 H 1.48496 * 109.46882 * 210.00157 * 24 22 20 27 27 H 1.48500 * 109.47085 * 329.99749 * 24 22 20 28 28 H 1.08997 * 109.47797 * 296.03925 * 1 2 3 29 29 H 1.09003 * 109.46950 * 176.03409 * 1 2 3 30 30 H 1.09005 * 109.47541 * 56.04362 * 1 2 3 31 31 H 0.96998 * 119.99737 * 95.00033 * 4 2 1 32 32 H 1.07991 * 123.35324 * 359.94704 * 8 7 5 33 33 H 1.07997 * 122.44635 * 180.02562 * 9 8 7 34 34 H 1.07997 * 124.52090 * 180.02562 * 10 9 8 35 35 H 1.09000 * 109.46772 * 84.66844 * 15 14 12 36 36 H 1.08998 * 109.46937 * 204.66668 * 15 14 12 37 37 H 1.09000 * 109.46917 * 324.66786 * 15 14 12 38 38 H 1.09006 * 109.47031 * 209.99645 * 16 14 12 39 39 H 1.08995 * 109.47257 * 329.99563 * 16 14 12 40 40 H 1.09006 * 109.46539 * 299.99837 * 17 16 14 41 41 H 1.08998 * 109.47059 * 59.98962 * 17 16 14 42 42 H 1.09006 * 109.47055 * 299.99576 * 18 17 16 43 43 H 1.08995 * 109.47192 * 59.99469 * 18 17 16 44 44 H 0.96993 * 119.99773 * 359.97438 * 19 18 17 45 45 H 0.97000 * 119.99710 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.1469 -0.0180 2.3572 6 8 1.8577 1.1629 2.4117 7 6 2.6350 -0.7091 3.5542 8 6 2.8080 -0.1385 4.7837 9 6 3.2786 -1.0179 5.7298 10 6 3.4850 -2.2656 5.2924 11 16 3.0855 -2.4066 3.6396 12 6 2.0324 -0.7104 -1.2304 13 8 2.5033 -1.8242 -1.1377 14 7 1.9583 -0.1081 -2.4338 15 6 1.4634 1.2671 -2.5354 16 6 2.3726 -0.8286 -3.6402 17 6 1.1725 -1.5754 -4.2258 18 6 1.6050 -2.3273 -5.4860 19 7 0.4560 -3.0429 -6.0464 20 6 0.6036 -3.7911 -7.1837 21 1 1.5670 -3.8534 -7.6679 22 6 -0.4850 -4.4695 -7.7143 23 7 -1.6592 -4.3932 -7.1245 24 14 -0.2838 -5.4896 -9.2662 25 1 0.0884 -6.8798 -8.9000 26 1 -1.5633 -5.5020 -10.0197 27 1 0.7834 -4.8980 -10.1126 28 1 -0.3634 0.4511 0.9233 29 1 -0.3633 -1.0252 -0.0711 30 1 -0.3634 0.5740 -0.8524 31 1 2.2490 -1.6316 1.1527 32 1 2.5966 0.9000 4.9914 33 1 3.4679 -0.7233 6.7515 34 1 3.8511 -3.0762 5.9049 35 1 2.2817 1.9624 -2.3486 36 1 1.0638 1.4364 -3.5353 37 1 0.6764 1.4253 -1.7980 38 1 2.7525 -0.1186 -4.3750 39 1 3.1560 -1.5425 -3.3860 40 1 0.7927 -2.2854 -3.4910 41 1 0.3890 -0.8615 -4.4799 42 1 1.9846 -1.6170 -6.2207 43 1 2.3886 -3.0412 -5.2323 44 1 -0.4091 -2.9872 -5.6113 45 1 -2.4198 -4.8676 -7.4951 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699526937.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:41 Heat of formation + Delta-G solvation = -21.865184 kcal Electronic energy + Delta-G solvation = -26224.806940 eV Core-core repulsion = 22369.701880 eV Total energy + Delta-G solvation = -3855.105060 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.79241 -39.60155 -37.86407 -36.38449 -35.30965 -34.85358 -32.49885 -31.51569 -29.98392 -29.43144 -27.10859 -25.95189 -25.47005 -23.97830 -22.74329 -21.45557 -20.93516 -20.15033 -19.36035 -18.94187 -17.08940 -17.07387 -16.97366 -16.07245 -15.95537 -15.71443 -15.41422 -15.01220 -14.52545 -14.47006 -14.20141 -13.90619 -13.59013 -13.31176 -13.22839 -13.17923 -13.05318 -12.86364 -12.69993 -12.68196 -12.24711 -12.01504 -11.93692 -11.72468 -11.36004 -10.94212 -10.84939 -10.75961 -10.47048 -10.42359 -10.10360 -9.97098 -9.71518 -9.56974 -9.26935 -9.01413 -8.85886 -8.78673 -6.90769 -5.74993 -3.03714 0.09388 1.06008 1.47505 1.98081 2.34289 2.45324 2.83391 3.05238 3.44850 3.49545 3.51403 4.09570 4.41866 4.57992 4.60729 4.72884 4.77494 4.85904 4.88422 5.04971 5.09167 5.16360 5.27721 5.40029 5.43491 5.49094 5.52981 5.57579 5.66220 5.74124 5.85547 5.88394 5.89387 5.94278 6.04981 6.27644 6.37253 6.43706 6.84641 6.86674 7.07062 7.15805 7.71256 7.75304 7.91317 8.43938 9.54820 10.13164 10.47722 11.48050 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.018555 B = 0.001920 C = 0.001815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.625016 B =14577.275741 C =15422.783115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.128 3.872 3 H 0.114 0.886 4 N -0.710 5.710 5 C 0.597 3.403 6 O -0.530 6.530 7 C -0.271 4.271 8 C -0.053 4.053 9 C -0.152 4.152 10 C -0.230 4.230 11 S 0.215 5.785 12 C 0.511 3.489 13 O -0.531 6.531 14 N -0.607 5.607 15 C 0.064 3.936 16 C 0.117 3.883 17 C -0.139 4.139 18 C 0.156 3.844 19 N -0.733 5.733 20 C -0.239 4.239 21 H 0.071 0.929 22 C -0.016 4.016 23 N -0.934 5.934 24 Si 0.908 3.092 25 H -0.290 1.290 26 H -0.291 1.291 27 H -0.282 1.282 28 H 0.075 0.925 29 H 0.068 0.932 30 H 0.080 0.920 31 H 0.409 0.591 32 H 0.154 0.846 33 H 0.146 0.854 34 H 0.170 0.830 35 H 0.060 0.940 36 H 0.082 0.918 37 H 0.076 0.924 38 H 0.080 0.920 39 H 0.086 0.914 40 H 0.065 0.935 41 H 0.063 0.937 42 H 0.019 0.981 43 H 0.020 0.980 44 H 0.383 0.617 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.541 12.032 25.816 30.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.019 3.981 3 H 0.132 0.868 4 N -0.364 5.364 5 C 0.383 3.617 6 O -0.409 6.409 7 C -0.391 4.391 8 C -0.087 4.087 9 C -0.184 4.184 10 C -0.368 4.368 11 S 0.482 5.518 12 C 0.297 3.703 13 O -0.408 6.408 14 N -0.339 5.339 15 C -0.079 4.079 16 C -0.005 4.005 17 C -0.178 4.178 18 C 0.028 3.972 19 N -0.377 5.377 20 C -0.370 4.370 21 H 0.089 0.911 22 C -0.212 4.212 23 N -0.583 5.583 24 Si 0.739 3.261 25 H -0.217 1.217 26 H -0.218 1.218 27 H -0.208 1.208 28 H 0.094 0.906 29 H 0.088 0.912 30 H 0.099 0.901 31 H 0.247 0.753 32 H 0.172 0.828 33 H 0.164 0.836 34 H 0.187 0.813 35 H 0.078 0.922 36 H 0.101 0.899 37 H 0.095 0.905 38 H 0.098 0.902 39 H 0.104 0.896 40 H 0.084 0.916 41 H 0.081 0.919 42 H 0.036 0.964 43 H 0.038 0.962 44 H 0.217 0.783 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 9.700 10.994 24.669 28.697 hybrid contribution -0.169 0.115 0.379 0.430 sum 9.531 11.109 25.048 29.011 Atomic orbital electron populations 1.22218 0.92209 1.03855 1.03890 1.20804 0.96163 0.97886 0.83211 0.86842 1.45653 1.67435 1.14780 1.08516 1.16890 0.77159 0.86024 0.81624 1.90828 1.50543 1.14841 1.84650 1.24578 1.16704 0.98952 0.98913 1.20808 0.96269 1.01475 0.90155 1.20061 1.04178 0.92501 1.01618 1.25417 1.08084 1.02359 1.00935 1.83361 1.58183 1.05388 1.04825 1.20475 0.78756 0.86441 0.84647 1.90718 1.45010 1.19344 1.85682 1.47792 1.64478 1.14934 1.06743 1.22088 0.99714 0.81793 1.04275 1.21569 0.97990 0.96258 0.84662 1.22062 0.97519 0.99548 0.98639 1.20537 0.91566 0.93580 0.91508 1.42342 1.07645 1.57471 1.30269 1.19247 0.95240 1.21331 1.01196 0.91136 1.24761 0.95646 1.01207 0.99562 1.69665 0.99955 1.47204 1.41476 0.86166 0.76719 0.80306 0.82867 1.21706 1.21770 1.20756 0.90559 0.91249 0.90134 0.75340 0.82815 0.83625 0.81252 0.92175 0.89919 0.90525 0.90183 0.89555 0.91623 0.91863 0.96354 0.96210 0.78329 0.93534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.53 9.22 37.16 0.34 -1.19 16 2 C 0.13 1.35 2.15 -69.09 -0.15 1.20 16 3 H 0.11 1.12 6.90 -51.93 -0.36 0.76 16 4 N -0.71 -7.77 5.02 -56.28 -0.28 -8.05 16 5 C 0.60 6.85 7.75 -12.89 -0.10 6.75 16 6 O -0.53 -7.28 16.50 5.19 0.09 -7.19 16 7 C -0.27 -2.61 6.45 -36.79 -0.24 -2.85 16 8 C -0.05 -0.45 10.01 -40.43 -0.40 -0.85 16 9 C -0.15 -0.99 10.15 -41.41 -0.42 -1.41 16 10 C -0.23 -1.43 10.92 29.18 0.32 -1.11 16 11 S 0.22 1.63 22.16 -107.50 -2.38 -0.75 16 12 C 0.51 6.50 6.97 -10.99 -0.08 6.43 16 13 O -0.53 -8.51 15.42 5.55 0.09 -8.42 16 14 N -0.61 -6.91 2.87 -181.57 -0.52 -7.43 16 15 C 0.06 0.50 9.85 59.85 0.59 1.09 16 16 C 0.12 1.53 5.41 -4.04 -0.02 1.51 16 17 C -0.14 -2.27 5.65 -26.73 -0.15 -2.42 16 18 C 0.16 3.19 6.26 -4.05 -0.03 3.16 16 19 N -0.73 -19.15 5.60 -59.91 -0.34 -19.48 16 20 C -0.24 -6.85 9.99 -15.06 -0.15 -7.00 16 21 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 22 C -0.02 -0.47 5.50 -17.43 -0.10 -0.57 16 23 N -0.93 -28.74 13.06 55.49 0.72 -28.02 16 24 Si 0.91 22.72 29.55 -169.99 -5.02 17.69 16 25 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 26 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 27 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 28 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 29 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.08 0.63 5.84 -51.93 -0.30 0.33 16 31 H 0.41 4.44 6.83 -40.82 -0.28 4.16 16 32 H 0.15 1.18 8.06 -52.49 -0.42 0.76 16 33 H 0.15 0.61 8.06 -52.49 -0.42 0.19 16 34 H 0.17 0.64 8.06 -52.49 -0.42 0.22 16 35 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 36 H 0.08 0.60 8.03 -51.93 -0.42 0.18 16 37 H 0.08 0.50 4.58 -51.93 -0.24 0.26 16 38 H 0.08 0.88 8.07 -51.93 -0.42 0.46 16 39 H 0.09 1.24 7.37 -51.93 -0.38 0.86 16 40 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 41 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 42 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 43 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 44 H 0.38 10.51 7.67 -40.82 -0.31 10.19 16 45 H 0.25 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 390.38 15.07 5.88 5.88 Total: -1.00 -35.36 390.38 -8.83 -44.19 By element: Atomic # 1 Polarization: 15.33 SS G_CDS: -6.48 Total: 8.84 kcal Atomic # 6 Polarization: 3.33 SS G_CDS: -0.58 Total: 2.74 kcal Atomic # 7 Polarization: -62.57 SS G_CDS: -0.42 Total: -62.98 kcal Atomic # 8 Polarization: -15.79 SS G_CDS: 0.17 Total: -15.61 kcal Atomic # 14 Polarization: 22.72 SS G_CDS: -5.02 Total: 17.69 kcal Atomic # 16 Polarization: 1.63 SS G_CDS: -2.38 Total: -0.75 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -35.36 -8.83 -44.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699526937.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.327 kcal (2) G-P(sol) polarization free energy of solvation -35.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds