Wall clock time and date at job start Sat Apr 11 2020 05:40:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.46864 * 2 1 4 4 N 1.46500 * 109.47166 * 119.99487 * 2 1 3 5 5 C 1.34779 * 119.99887 * 275.00846 * 4 2 1 6 6 O 1.21702 * 120.00223 * 359.97438 * 5 4 2 7 7 C 1.46581 * 119.99721 * 179.97438 * 5 4 2 8 8 C 1.36652 * 125.45473 * 179.97438 * 7 5 4 9 9 C 1.37476 * 113.29327 * 179.97438 * 8 7 5 10 10 C 1.33818 * 115.10371 * 0.02562 * 9 8 7 11 11 S 1.70621 * 110.95323 * 359.75517 * 10 9 8 12 12 C 1.50692 * 109.47359 * 239.99919 * 2 1 3 13 13 O 1.21288 * 119.99950 * 254.24925 * 12 2 1 14 14 N 1.34777 * 120.00584 * 74.24790 * 12 2 1 15 15 C 1.46506 * 119.99531 * 3.63148 * 14 12 2 16 16 C 1.46494 * 120.00115 * 183.63818 * 14 12 2 17 17 C 1.53001 * 109.47620 * 90.00109 * 16 14 12 18 18 C 1.52993 * 109.47662 * 179.97438 * 17 16 14 19 19 N 1.46499 * 109.47480 * 179.97438 * 18 17 16 20 20 C 1.36932 * 120.00054 * 180.02562 * 19 18 17 21 21 H 1.07999 * 120.00555 * 359.97438 * 20 19 18 22 22 C 1.38814 * 119.99886 * 179.97438 * 20 19 18 23 23 N 1.31618 * 120.00006 * 0.02562 * 22 20 19 24 24 Si 1.86805 * 119.99941 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47081 * 90.00039 * 24 22 20 26 26 H 1.48496 * 109.46882 * 210.00157 * 24 22 20 27 27 H 1.48500 * 109.47085 * 329.99749 * 24 22 20 28 28 H 1.08997 * 109.47797 * 296.03925 * 1 2 3 29 29 H 1.09003 * 109.46950 * 176.03409 * 1 2 3 30 30 H 1.09005 * 109.47541 * 56.04362 * 1 2 3 31 31 H 0.96998 * 119.99737 * 95.00033 * 4 2 1 32 32 H 1.07991 * 123.35324 * 359.94704 * 8 7 5 33 33 H 1.07997 * 122.44635 * 180.02562 * 9 8 7 34 34 H 1.07997 * 124.52090 * 180.02562 * 10 9 8 35 35 H 1.09000 * 109.46772 * 84.66844 * 15 14 12 36 36 H 1.08998 * 109.46937 * 204.66668 * 15 14 12 37 37 H 1.09000 * 109.46917 * 324.66786 * 15 14 12 38 38 H 1.09006 * 109.47031 * 209.99645 * 16 14 12 39 39 H 1.08995 * 109.47257 * 329.99563 * 16 14 12 40 40 H 1.09006 * 109.46539 * 299.99837 * 17 16 14 41 41 H 1.08998 * 109.47059 * 59.98962 * 17 16 14 42 42 H 1.09006 * 109.47055 * 299.99576 * 18 17 16 43 43 H 1.08995 * 109.47192 * 59.99469 * 18 17 16 44 44 H 0.96993 * 119.99773 * 359.97438 * 19 18 17 45 45 H 0.97000 * 119.99710 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.1469 -0.0180 2.3572 6 8 1.8577 1.1629 2.4117 7 6 2.6350 -0.7091 3.5542 8 6 2.8080 -0.1385 4.7837 9 6 3.2786 -1.0179 5.7298 10 6 3.4850 -2.2656 5.2924 11 16 3.0855 -2.4066 3.6396 12 6 2.0324 -0.7104 -1.2304 13 8 2.5033 -1.8242 -1.1377 14 7 1.9583 -0.1081 -2.4338 15 6 1.4634 1.2671 -2.5354 16 6 2.3726 -0.8286 -3.6402 17 6 1.1725 -1.5754 -4.2258 18 6 1.6050 -2.3273 -5.4860 19 7 0.4560 -3.0429 -6.0464 20 6 0.6036 -3.7911 -7.1837 21 1 1.5670 -3.8534 -7.6679 22 6 -0.4850 -4.4695 -7.7143 23 7 -1.6592 -4.3932 -7.1245 24 14 -0.2838 -5.4896 -9.2662 25 1 0.0884 -6.8798 -8.9000 26 1 -1.5633 -5.5020 -10.0197 27 1 0.7834 -4.8980 -10.1126 28 1 -0.3634 0.4511 0.9233 29 1 -0.3633 -1.0252 -0.0711 30 1 -0.3634 0.5740 -0.8524 31 1 2.2490 -1.6316 1.1527 32 1 2.5966 0.9000 4.9914 33 1 3.4679 -0.7233 6.7515 34 1 3.8511 -3.0762 5.9049 35 1 2.2817 1.9624 -2.3486 36 1 1.0638 1.4364 -3.5353 37 1 0.6764 1.4253 -1.7980 38 1 2.7525 -0.1186 -4.3750 39 1 3.1560 -1.5425 -3.3860 40 1 0.7927 -2.2854 -3.4910 41 1 0.3890 -0.8615 -4.4799 42 1 1.9846 -1.6170 -6.2207 43 1 2.3886 -3.0412 -5.2323 44 1 -0.4091 -2.9872 -5.6113 45 1 -2.4198 -4.8676 -7.4951 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699526937.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:41 Heat of formation + Delta-G solvation = -46.410646 kcal Electronic energy + Delta-G solvation = -26225.871312 eV Core-core repulsion = 22369.701880 eV Total energy + Delta-G solvation = -3856.169431 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.72322 -40.50077 -38.48109 -37.63786 -36.50113 -36.19479 -34.13780 -32.63285 -31.38133 -30.30684 -27.99987 -27.23881 -26.27898 -25.28260 -24.10583 -22.64968 -22.12704 -20.96855 -20.05759 -19.75847 -19.15689 -18.02862 -17.83138 -16.94022 -16.79313 -16.64530 -16.56238 -16.25732 -15.85339 -15.75073 -15.31431 -15.07383 -14.91010 -14.58110 -14.38245 -13.90265 -13.72900 -13.68971 -13.61460 -13.45908 -13.33230 -13.22163 -12.95693 -12.82614 -12.76227 -12.52626 -12.40654 -12.06131 -11.93450 -11.82773 -11.80245 -11.34938 -11.00059 -10.95312 -10.46595 -9.89517 -9.76666 -9.58700 -9.03028 -7.96990 -5.26716 -0.53259 0.46083 0.92150 1.33282 1.39055 1.46495 1.49039 1.57025 1.58067 2.06363 2.18895 2.55316 3.22433 3.36544 3.67197 3.84402 3.93351 3.96818 4.02238 4.12717 4.17734 4.31355 4.33854 4.49634 4.52045 4.52785 4.57250 4.66283 4.69689 4.73981 4.87002 4.88645 4.99915 5.09402 5.16510 5.19243 5.27903 5.30118 5.35117 5.46676 5.47710 6.21453 6.22407 6.25257 6.88470 6.94361 7.30928 8.06466 8.29574 9.26738 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.018555 B = 0.001920 C = 0.001815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.625016 B =14577.275741 C =15422.783115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.132 3.868 3 H 0.124 0.876 4 N -0.711 5.711 5 C 0.596 3.404 6 O -0.560 6.560 7 C -0.305 4.305 8 C -0.051 4.051 9 C -0.158 4.158 10 C -0.216 4.216 11 S 0.211 5.789 12 C 0.506 3.494 13 O -0.571 6.571 14 N -0.604 5.604 15 C 0.056 3.944 16 C 0.126 3.874 17 C -0.121 4.121 18 C 0.154 3.846 19 N -0.749 5.749 20 C -0.249 4.249 21 H 0.077 0.923 22 C -0.079 4.079 23 N -0.971 5.971 24 Si 0.978 3.022 25 H -0.288 1.288 26 H -0.293 1.293 27 H -0.267 1.267 28 H 0.076 0.924 29 H 0.056 0.944 30 H 0.098 0.902 31 H 0.409 0.591 32 H 0.156 0.844 33 H 0.173 0.827 34 H 0.198 0.802 35 H 0.080 0.920 36 H 0.093 0.907 37 H 0.089 0.911 38 H 0.109 0.891 39 H 0.070 0.930 40 H 0.040 0.960 41 H 0.070 0.930 42 H 0.034 0.966 43 H 0.014 0.986 44 H 0.372 0.628 45 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.593 12.837 26.354 31.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.024 3.976 3 H 0.142 0.858 4 N -0.364 5.364 5 C 0.385 3.615 6 O -0.441 6.441 7 C -0.425 4.425 8 C -0.085 4.085 9 C -0.188 4.188 10 C -0.354 4.354 11 S 0.478 5.522 12 C 0.294 3.706 13 O -0.451 6.451 14 N -0.335 5.335 15 C -0.085 4.085 16 C 0.003 3.997 17 C -0.160 4.160 18 C 0.027 3.973 19 N -0.391 5.391 20 C -0.380 4.380 21 H 0.095 0.905 22 C -0.271 4.271 23 N -0.621 5.621 24 Si 0.806 3.194 25 H -0.215 1.215 26 H -0.220 1.220 27 H -0.192 1.192 28 H 0.095 0.905 29 H 0.076 0.924 30 H 0.117 0.883 31 H 0.246 0.754 32 H 0.173 0.827 33 H 0.190 0.810 34 H 0.216 0.784 35 H 0.098 0.902 36 H 0.111 0.889 37 H 0.107 0.893 38 H 0.127 0.873 39 H 0.089 0.911 40 H 0.059 0.941 41 H 0.089 0.911 42 H 0.052 0.948 43 H 0.032 0.968 44 H 0.204 0.796 45 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 10.787 11.837 25.203 29.860 hybrid contribution -0.436 -0.122 0.291 0.538 sum 10.351 11.714 25.494 29.905 Atomic orbital electron populations 1.22190 0.91265 1.03425 1.04719 1.20845 0.96752 0.97901 0.82139 0.85796 1.45709 1.67268 1.14753 1.08652 1.17144 0.76560 0.85753 0.82084 1.90793 1.52134 1.15956 1.85187 1.24530 1.19019 1.00216 0.98763 1.21055 0.95395 1.01945 0.90133 1.20308 1.03863 0.92189 1.02478 1.25808 1.06421 1.03079 1.00077 1.83391 1.58286 1.04148 1.06344 1.20879 0.78154 0.86020 0.85574 1.90697 1.46867 1.21138 1.86349 1.47853 1.63857 1.16087 1.05696 1.22378 1.00887 0.79802 1.05428 1.21390 0.95868 0.96637 0.85822 1.21861 0.99027 0.98927 0.96204 1.20708 0.89738 0.93554 0.93302 1.42592 1.08690 1.57912 1.29932 1.19678 0.95463 1.21082 1.01797 0.90462 1.25648 0.95457 1.02937 1.03053 1.69826 1.00656 1.48471 1.43180 0.85081 0.76780 0.78467 0.79075 1.21485 1.21974 1.19159 0.90504 0.92440 0.88339 0.75425 0.82692 0.80995 0.78450 0.90188 0.88858 0.89279 0.87253 0.91105 0.94145 0.91139 0.94830 0.96776 0.79604 0.93944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.88 9.22 71.98 0.66 -2.22 16 2 C 0.13 2.74 2.15 44.24 0.10 2.84 16 3 H 0.12 2.33 6.90 -2.39 -0.02 2.31 16 4 N -0.71 -15.91 5.02 -450.17 -2.26 -18.17 16 5 C 0.60 13.96 7.75 86.42 0.67 14.63 16 6 O -0.56 -15.55 16.50 -4.36 -0.07 -15.62 16 7 C -0.31 -5.89 6.45 24.08 0.16 -5.73 16 8 C -0.05 -0.81 10.01 21.72 0.22 -0.59 16 9 C -0.16 -1.74 10.15 21.08 0.21 -1.53 16 10 C -0.22 -2.22 10.92 66.81 0.73 -1.49 16 11 S 0.21 3.09 22.16 -56.49 -1.25 1.84 16 12 C 0.51 12.82 6.97 87.65 0.61 13.43 16 13 O -0.57 -18.79 15.42 -3.05 -0.05 -18.84 16 14 N -0.60 -12.97 2.87 -846.76 -2.43 -15.40 16 15 C 0.06 0.73 9.85 127.77 1.26 1.99 16 16 C 0.13 3.13 5.41 86.38 0.47 3.60 16 17 C -0.12 -3.92 5.65 30.59 0.17 -3.74 16 18 C 0.15 6.22 6.26 86.38 0.54 6.76 16 19 N -0.75 -39.38 5.60 -343.47 -1.92 -41.31 16 20 C -0.25 -14.24 9.99 84.03 0.84 -13.40 16 21 H 0.08 4.22 7.83 -2.91 -0.02 4.20 16 22 C -0.08 -4.63 5.50 84.86 0.47 -4.16 16 23 N -0.97 -60.52 13.06 21.65 0.28 -60.24 16 24 Si 0.98 46.71 29.55 68.60 2.03 48.74 16 25 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 26 H -0.29 -13.99 7.11 99.48 0.71 -13.29 16 27 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 28 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.10 1.40 5.84 -2.38 -0.01 1.39 16 31 H 0.41 9.27 6.83 -92.71 -0.63 8.63 16 32 H 0.16 2.33 8.06 -2.92 -0.02 2.31 16 33 H 0.17 0.94 8.06 -2.91 -0.02 0.91 16 34 H 0.20 0.85 8.06 -2.91 -0.02 0.83 16 35 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 36 H 0.09 1.06 8.03 -2.39 -0.02 1.05 16 37 H 0.09 0.95 4.58 -2.39 -0.01 0.94 16 38 H 0.11 2.11 8.07 -2.38 -0.02 2.09 16 39 H 0.07 2.02 7.37 -2.39 -0.02 2.00 16 40 H 0.04 1.50 8.14 -2.38 -0.02 1.48 16 41 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 42 H 0.03 1.28 8.14 -2.38 -0.02 1.26 16 43 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 44 H 0.37 20.84 7.67 -92.71 -0.71 20.13 16 45 H 0.25 15.14 8.31 -92.71 -0.77 14.37 16 Total: -1.00 -77.16 390.38 1.10 -76.05 By element: Atomic # 1 Polarization: 32.88 SS G_CDS: -0.32 Total: 32.56 kcal Atomic # 6 Polarization: 3.28 SS G_CDS: 7.10 Total: 10.38 kcal Atomic # 7 Polarization: -128.78 SS G_CDS: -6.33 Total: -135.12 kcal Atomic # 8 Polarization: -34.34 SS G_CDS: -0.12 Total: -34.46 kcal Atomic # 14 Polarization: 46.71 SS G_CDS: 2.03 Total: 48.74 kcal Atomic # 16 Polarization: 3.09 SS G_CDS: -1.25 Total: 1.84 kcal Total: -77.16 1.10 -76.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699526937.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.640 kcal (2) G-P(sol) polarization free energy of solvation -77.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds