Wall clock time and date at job start Sat Apr 11 2020 05:40:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.47355 * 2 1 4 4 N 1.46497 * 109.47103 * 240.00088 * 2 1 3 5 5 C 1.34780 * 120.00310 * 85.00069 * 4 2 1 6 6 O 1.21702 * 119.99543 * 0.02562 * 5 4 2 7 7 C 1.46579 * 119.99808 * 180.02562 * 5 4 2 8 8 C 1.36649 * 125.45202 * 180.02562 * 7 5 4 9 9 C 1.37477 * 113.29422 * 179.97438 * 8 7 5 10 10 C 1.33809 * 115.10160 * 359.97438 * 9 8 7 11 11 S 1.70617 * 110.95481 * 359.72866 * 10 9 8 12 12 C 1.50703 * 109.47060 * 120.00142 * 2 1 3 13 13 O 1.21280 * 119.99779 * 106.21272 * 12 2 1 14 14 N 1.34773 * 119.99817 * 286.21578 * 12 2 1 15 15 C 1.46504 * 120.00248 * 4.73650 * 14 12 2 16 16 C 1.46505 * 119.99911 * 185.00855 * 14 12 2 17 17 C 1.52995 * 109.47143 * 269.72535 * 16 14 12 18 18 C 1.53002 * 109.46970 * 179.97438 * 17 16 14 19 19 N 1.46508 * 109.47036 * 180.02562 * 18 17 16 20 20 C 1.36934 * 119.99799 * 180.02562 * 19 18 17 21 21 H 1.08000 * 120.00113 * 359.97438 * 20 19 18 22 22 C 1.38816 * 119.99733 * 180.02562 * 20 19 18 23 23 N 1.31618 * 120.00369 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 119.99699 * 179.97438 * 22 20 19 25 25 H 1.48494 * 109.47191 * 359.97438 * 24 22 20 26 26 H 1.48500 * 109.47030 * 119.99807 * 24 22 20 27 27 H 1.48502 * 109.46865 * 239.99480 * 24 22 20 28 28 H 1.09000 * 109.47354 * 170.37559 * 1 2 3 29 29 H 1.08999 * 109.47250 * 290.37753 * 1 2 3 30 30 H 1.09004 * 109.47158 * 50.37318 * 1 2 3 31 31 H 0.97009 * 119.99794 * 265.00199 * 4 2 1 32 32 H 1.07997 * 123.35424 * 359.97438 * 8 7 5 33 33 H 1.07997 * 122.44522 * 180.02562 * 9 8 7 34 34 H 1.08001 * 124.52222 * 180.02562 * 10 9 8 35 35 H 1.09004 * 109.47009 * 267.88288 * 15 14 12 36 36 H 1.09002 * 109.46855 * 27.88294 * 15 14 12 37 37 H 1.09003 * 109.47118 * 147.88261 * 15 14 12 38 38 H 1.08998 * 109.46672 * 29.72457 * 16 14 12 39 39 H 1.09006 * 109.47006 * 149.72570 * 16 14 12 40 40 H 1.09004 * 109.47475 * 300.00239 * 17 16 14 41 41 H 1.09000 * 109.47454 * 59.99842 * 17 16 14 42 42 H 1.08993 * 109.47607 * 300.00040 * 18 17 16 43 43 H 1.08999 * 109.47063 * 60.00541 * 18 17 16 44 44 H 0.97001 * 119.99673 * 359.97438 * 19 18 17 45 45 H 0.96991 * 120.00190 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1471 -0.0182 -2.3572 6 8 1.8581 1.1627 -2.4117 7 6 2.6351 -0.7095 -3.5541 8 6 2.8083 -0.1389 -4.7836 9 6 3.2800 -1.0181 -5.7294 10 6 3.4870 -2.2655 -5.2917 11 16 3.1003 -2.4031 -3.6356 12 6 2.0323 -0.7105 1.2305 13 8 2.5109 -1.8209 1.1366 14 7 1.9496 -0.1118 2.4351 15 6 1.2784 1.1839 2.5648 16 6 2.5362 -0.7541 3.6140 17 6 1.4904 -1.6507 4.2797 18 6 2.1032 -2.3219 5.5105 19 7 1.1019 -3.1809 6.1477 20 6 1.4242 -3.8879 7.2752 21 1 2.4166 -3.8126 7.6946 22 6 0.4756 -4.7023 7.8786 23 7 -0.7336 -4.7945 7.3672 24 14 0.9155 -5.6673 9.4164 25 1 2.3272 -5.3926 9.7862 26 1 0.0228 -5.2575 10.5301 27 1 0.7462 -7.1192 9.1549 28 1 -0.3634 -1.0132 -0.1718 29 1 -0.3634 0.3578 0.9633 30 1 -0.3634 0.6554 -0.7915 31 1 2.2490 -1.6318 -1.1526 32 1 2.5959 0.8993 -4.9917 33 1 3.4703 -0.7233 -6.7508 34 1 3.8546 -3.0759 -5.9037 35 1 2.0102 1.9846 2.4572 36 1 0.5191 1.2790 1.7885 37 1 0.8065 1.2522 3.5450 38 1 3.3920 -1.3573 3.3110 39 1 2.8619 0.0101 4.3199 40 1 0.6345 -1.0475 4.5827 41 1 1.1646 -2.4148 3.5740 42 1 2.9588 -2.9251 5.2073 43 1 2.4291 -1.5580 6.2165 44 1 0.2105 -3.2482 5.7711 45 1 -1.3965 -5.3632 7.7890 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699526943.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:43 Heat of formation + Delta-G solvation = -18.911781 kcal Electronic energy + Delta-G solvation = -26211.475728 eV Core-core repulsion = 22356.498737 eV Total energy + Delta-G solvation = -3854.976991 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.80416 -39.60603 -37.86586 -36.37363 -35.34130 -34.84829 -32.52519 -31.51303 -29.99899 -29.40036 -27.14929 -25.92428 -25.46954 -23.96187 -22.75310 -21.45775 -20.93832 -20.16374 -19.37502 -18.95549 -17.08485 -17.06135 -16.97619 -16.07798 -15.96073 -15.69717 -15.36575 -15.06230 -14.52381 -14.46173 -14.21486 -13.90573 -13.63513 -13.33240 -13.24952 -13.18154 -13.08006 -12.93019 -12.71418 -12.65331 -12.18477 -12.02831 -11.91932 -11.63664 -11.35951 -10.93767 -10.86112 -10.74476 -10.47338 -10.41706 -10.07114 -9.95253 -9.71582 -9.57347 -9.27298 -9.01510 -8.85978 -8.78200 -6.90128 -5.74687 -3.03333 0.09263 1.05932 1.47446 1.97882 2.33714 2.46204 2.83187 3.04478 3.44560 3.49910 3.52437 4.08256 4.41554 4.57861 4.61024 4.71438 4.77271 4.83325 4.88103 5.04822 5.11204 5.15838 5.24917 5.40485 5.41428 5.50087 5.52483 5.58020 5.66229 5.73962 5.86298 5.86896 5.89020 5.93471 6.05602 6.28833 6.38360 6.44144 6.85995 6.87950 7.06555 7.16488 7.72074 7.74907 7.91626 8.44242 9.55176 10.13692 10.48252 11.48454 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.018219 B = 0.001925 C = 0.001806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1536.470065 B =14545.688766 C =15499.561579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.128 3.872 3 H 0.115 0.885 4 N -0.710 5.710 5 C 0.597 3.403 6 O -0.530 6.530 7 C -0.271 4.271 8 C -0.053 4.053 9 C -0.152 4.152 10 C -0.230 4.230 11 S 0.216 5.784 12 C 0.509 3.491 13 O -0.529 6.529 14 N -0.607 5.607 15 C 0.059 3.941 16 C 0.119 3.881 17 C -0.139 4.139 18 C 0.156 3.844 19 N -0.733 5.733 20 C -0.238 4.238 21 H 0.071 0.929 22 C -0.016 4.016 23 N -0.934 5.934 24 Si 0.908 3.092 25 H -0.280 1.280 26 H -0.292 1.292 27 H -0.291 1.291 28 H 0.069 0.931 29 H 0.082 0.918 30 H 0.076 0.924 31 H 0.409 0.591 32 H 0.154 0.846 33 H 0.146 0.854 34 H 0.170 0.830 35 H 0.060 0.940 36 H 0.082 0.918 37 H 0.080 0.920 38 H 0.084 0.916 39 H 0.080 0.920 40 H 0.062 0.938 41 H 0.067 0.933 42 H 0.020 0.980 43 H 0.018 0.982 44 H 0.383 0.617 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.540 13.004 -26.527 30.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.020 3.980 3 H 0.132 0.868 4 N -0.364 5.364 5 C 0.383 3.617 6 O -0.409 6.409 7 C -0.392 4.392 8 C -0.087 4.087 9 C -0.184 4.184 10 C -0.368 4.368 11 S 0.483 5.517 12 C 0.295 3.705 13 O -0.406 6.406 14 N -0.340 5.340 15 C -0.084 4.084 16 C -0.003 4.003 17 C -0.178 4.178 18 C 0.028 3.972 19 N -0.377 5.377 20 C -0.369 4.369 21 H 0.089 0.911 22 C -0.212 4.212 23 N -0.583 5.583 24 Si 0.739 3.261 25 H -0.205 1.205 26 H -0.219 1.219 27 H -0.219 1.219 28 H 0.089 0.911 29 H 0.101 0.899 30 H 0.095 0.905 31 H 0.247 0.753 32 H 0.172 0.828 33 H 0.164 0.836 34 H 0.188 0.812 35 H 0.078 0.922 36 H 0.101 0.899 37 H 0.099 0.901 38 H 0.103 0.897 39 H 0.098 0.902 40 H 0.081 0.919 41 H 0.085 0.915 42 H 0.038 0.962 43 H 0.036 0.964 44 H 0.217 0.783 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 6.750 11.977 -25.389 28.872 hybrid contribution -0.053 0.091 -0.353 0.369 sum 6.697 12.068 -25.742 29.209 Atomic orbital electron populations 1.22327 0.92388 1.04056 1.03888 1.20799 0.96099 0.97886 0.83244 0.86760 1.45659 1.67456 1.14769 1.08497 1.16890 0.77140 0.86014 0.81624 1.90825 1.50561 1.14844 1.84651 1.24573 1.16624 0.99067 0.98909 1.20808 0.96253 1.01444 0.90201 1.20059 1.04206 0.92459 1.01641 1.25417 1.08123 1.02370 1.00880 1.83367 1.58112 1.05709 1.04526 1.20485 0.79063 0.86283 0.84623 1.90725 1.45236 1.18835 1.85764 1.47794 1.56861 1.21556 1.07781 1.22191 0.97749 0.84111 1.04301 1.21554 0.96796 0.96617 0.85342 1.22052 0.98386 0.99003 0.98327 1.20541 0.92721 0.92713 0.91216 1.42355 1.11771 1.52642 1.30964 1.19297 0.96947 1.18915 1.01767 0.91080 1.24762 0.95964 1.00800 0.99695 1.69672 1.03687 1.43158 1.41775 0.86096 0.77408 0.79721 0.82862 1.20539 1.21878 1.21866 0.91149 0.89912 0.90474 0.75312 0.82821 0.83625 0.81247 0.92167 0.89939 0.90123 0.89747 0.90199 0.91922 0.91467 0.96219 0.96393 0.78327 0.93585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.51 9.05 37.16 0.34 -1.17 16 2 C 0.13 1.33 2.17 -69.08 -0.15 1.18 16 3 H 0.11 1.12 7.15 -51.93 -0.37 0.75 16 4 N -0.71 -7.71 5.02 -56.27 -0.28 -7.99 16 5 C 0.60 6.82 7.75 -12.90 -0.10 6.72 16 6 O -0.53 -7.24 16.50 5.19 0.09 -7.16 16 7 C -0.27 -2.61 6.45 -36.79 -0.24 -2.84 16 8 C -0.05 -0.44 10.01 -40.43 -0.40 -0.85 16 9 C -0.15 -0.99 10.15 -41.41 -0.42 -1.41 16 10 C -0.23 -1.43 10.92 29.18 0.32 -1.11 16 11 S 0.22 1.63 22.16 -107.50 -2.38 -0.75 16 12 C 0.51 6.46 6.99 -10.99 -0.08 6.39 16 13 O -0.53 -8.52 15.48 5.56 0.09 -8.43 16 14 N -0.61 -6.91 2.87 -181.56 -0.52 -7.44 16 15 C 0.06 0.46 9.85 59.85 0.59 1.05 16 16 C 0.12 1.56 5.39 -4.04 -0.02 1.54 16 17 C -0.14 -2.30 5.65 -26.73 -0.15 -2.45 16 18 C 0.16 3.21 6.26 -4.04 -0.03 3.18 16 19 N -0.73 -19.23 5.60 -59.91 -0.34 -19.56 16 20 C -0.24 -6.85 9.99 -15.06 -0.15 -7.00 16 21 H 0.07 1.98 7.83 -52.49 -0.41 1.57 16 22 C -0.02 -0.49 5.50 -17.43 -0.10 -0.58 16 23 N -0.93 -28.82 13.06 55.49 0.72 -28.10 16 24 Si 0.91 22.76 29.55 -169.99 -5.02 17.74 16 25 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 26 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 27 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 28 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.08 0.63 5.50 -51.93 -0.29 0.35 16 30 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.41 4.42 6.83 -40.82 -0.28 4.14 16 32 H 0.15 1.18 8.06 -52.49 -0.42 0.75 16 33 H 0.15 0.61 8.06 -52.49 -0.42 0.19 16 34 H 0.17 0.64 8.06 -52.49 -0.42 0.22 16 35 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.08 0.53 4.19 -51.93 -0.22 0.31 16 37 H 0.08 0.60 8.09 -51.93 -0.42 0.17 16 38 H 0.08 1.21 7.49 -51.93 -0.39 0.82 16 39 H 0.08 0.88 8.07 -51.93 -0.42 0.46 16 40 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 42 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 44 H 0.38 10.56 7.67 -40.82 -0.31 10.25 16 45 H 0.25 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 389.99 15.07 5.88 5.88 Total: -1.00 -35.54 389.99 -8.83 -44.37 By element: Atomic # 1 Polarization: 15.26 SS G_CDS: -6.47 Total: 8.79 kcal Atomic # 6 Polarization: 3.24 SS G_CDS: -0.59 Total: 2.65 kcal Atomic # 7 Polarization: -62.67 SS G_CDS: -0.42 Total: -63.09 kcal Atomic # 8 Polarization: -15.76 SS G_CDS: 0.17 Total: -15.59 kcal Atomic # 14 Polarization: 22.76 SS G_CDS: -5.02 Total: 17.74 kcal Atomic # 16 Polarization: 1.63 SS G_CDS: -2.38 Total: -0.75 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -35.54 -8.83 -44.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699526943.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.454 kcal (2) G-P(sol) polarization free energy of solvation -35.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds