Wall clock time and date at job start Sat Apr 11 2020 05:40:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09006 * 109.47134 * 2 1 4 4 N 1.46509 * 109.46920 * 119.99139 * 2 1 3 5 5 C 1.36940 * 119.99895 * 274.99983 * 4 2 1 6 6 H 1.07997 * 120.00219 * 0.02562 * 5 4 2 7 7 C 1.38811 * 119.99558 * 179.97438 * 5 4 2 8 8 N 1.31620 * 119.99656 * 179.97438 * 7 5 4 9 9 Si 1.86794 * 120.00153 * 0.02562 * 7 5 4 10 10 H 1.48498 * 109.47403 * 89.99920 * 9 7 5 11 11 H 1.48505 * 109.47413 * 209.99767 * 9 7 5 12 12 H 1.48499 * 109.47190 * 329.99681 * 9 7 5 13 13 C 1.52993 * 109.47596 * 239.99184 * 2 1 3 14 14 H 1.08999 * 109.47640 * 175.00067 * 13 2 1 15 15 C 1.52998 * 109.47103 * 295.00333 * 13 2 1 16 16 N 1.46506 * 109.46849 * 54.99661 * 13 2 1 17 17 C 1.34780 * 119.99577 * 154.99820 * 16 13 2 18 18 O 1.21277 * 120.00186 * 0.02562 * 17 16 13 19 19 C 1.50699 * 119.99717 * 180.02562 * 17 16 13 20 20 N 1.46498 * 109.47183 * 180.02562 * 19 17 16 21 21 C 1.46497 * 119.99861 * 270.00043 * 20 19 17 22 22 C 1.34774 * 120.00027 * 89.99874 * 20 19 17 23 23 O 1.21700 * 120.00295 * 0.13572 * 22 20 19 24 24 C 1.46587 * 119.99717 * 180.13223 * 22 20 19 25 25 C 1.36653 * 125.45710 * 171.40021 * 24 22 20 26 26 C 1.37470 * 113.29601 * 179.97438 * 25 24 22 27 27 C 1.33810 * 115.10323 * 359.97438 * 26 25 24 28 28 S 1.70622 * 110.95575 * 359.97438 * 27 26 25 29 29 H 1.09001 * 109.47197 * 60.00716 * 1 2 3 30 30 H 1.08999 * 109.47270 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.47298 * 300.01087 * 1 2 3 32 32 H 0.96997 * 119.99874 * 95.00327 * 4 2 1 33 33 H 0.97002 * 119.99755 * 179.97438 * 8 7 5 34 34 H 1.08999 * 109.47692 * 179.97438 * 15 13 2 35 35 H 1.08995 * 109.47053 * 299.99817 * 15 13 2 36 36 H 1.09007 * 109.47365 * 59.99986 * 15 13 2 37 37 H 0.96995 * 120.00326 * 335.00667 * 16 13 2 38 38 H 1.09004 * 109.47263 * 60.00604 * 19 17 16 39 39 H 1.09001 * 109.47041 * 300.00569 * 19 17 16 40 40 H 1.08996 * 109.47470 * 263.45634 * 21 20 19 41 41 H 1.09006 * 109.47528 * 23.46122 * 21 20 19 42 42 H 1.09000 * 109.47474 * 143.45659 * 21 20 19 43 43 H 1.07997 * 123.34915 * 0.27103 * 25 24 22 44 44 H 1.08002 * 122.44916 * 180.02562 * 26 25 24 45 45 H 1.08004 * 124.52467 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 1.1964 5 6 2.1490 -0.0071 2.3759 6 1 1.8918 1.0406 2.4243 7 6 2.6112 -0.6615 3.5094 8 7 2.7374 -0.0046 4.6430 9 14 3.0554 -2.4740 3.4258 10 1 4.4882 -2.6163 3.0626 11 1 2.8153 -3.1041 4.7489 12 1 2.2158 -3.1425 2.3995 13 6 2.0401 -0.7214 -1.2490 14 1 3.1264 -0.6445 -1.2950 15 6 1.6353 -2.1956 -1.1876 16 7 1.4558 -0.1039 -2.4423 17 6 2.0914 -0.1942 -3.6274 18 8 3.1465 -0.7869 -3.7061 19 6 1.4908 0.4414 -4.8548 20 7 2.3656 0.2038 -6.0056 21 6 3.4266 1.1607 -6.3290 22 6 2.1944 -0.8952 -6.7667 23 8 1.3114 -1.6890 -6.4994 24 6 3.0716 -1.1344 -7.9164 25 6 3.1095 -2.2805 -8.6597 26 6 4.0270 -2.2350 -9.6825 27 6 4.7170 -1.0924 -9.7758 28 16 4.2419 0.0082 -8.5617 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5140 0.8899 32 1 2.2490 -1.6316 1.1529 33 1 3.0600 -0.4620 5.4353 34 1 1.9983 -2.7095 -2.0777 35 1 2.0698 -2.6549 -0.2999 36 1 0.5489 -2.2725 -1.1418 37 1 0.6118 0.3698 -2.3794 38 1 1.3852 1.5143 -4.6937 39 1 0.5108 0.0048 -5.0474 40 1 3.0745 1.8473 -7.0989 41 1 3.6933 1.7237 -5.4345 42 1 4.3018 0.6233 -6.6942 43 1 2.4780 -3.1349 -8.4661 44 1 4.1790 -3.0609 -10.3617 45 1 5.4738 -0.8933 -10.5202 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700400164.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:46 Heat of formation + Delta-G solvation = -4.499457 kcal Electronic energy + Delta-G solvation = -27008.294589 eV Core-core repulsion = 23153.942564 eV Total energy + Delta-G solvation = -3854.352026 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.58368 -39.39689 -37.84948 -37.04583 -35.69964 -34.01705 -32.00280 -30.94994 -29.85109 -28.65338 -28.39439 -27.02846 -24.92019 -24.40951 -22.99450 -21.56868 -20.31547 -19.43664 -19.32308 -18.41267 -18.07701 -17.34021 -16.73151 -16.19507 -15.86569 -15.56811 -15.07356 -15.03548 -14.60119 -14.13713 -13.98718 -13.80161 -13.66565 -13.50375 -13.36479 -13.09743 -12.95429 -12.80356 -12.68716 -12.45920 -12.26030 -11.99301 -11.75764 -11.52928 -11.12018 -10.95479 -10.91078 -10.60508 -10.37493 -10.33954 -10.13437 -10.03907 -9.60517 -9.28954 -9.04253 -8.97769 -8.90327 -8.76846 -7.33164 -5.80175 -3.16572 0.18858 1.13658 1.57619 2.06460 2.39521 2.65453 2.92795 3.33928 3.37028 3.40345 3.45169 4.15510 4.55646 4.56873 4.64818 4.70299 4.80175 4.94160 4.96242 5.11702 5.15501 5.21807 5.23895 5.27856 5.40658 5.55360 5.60366 5.65400 5.80106 5.91858 5.92770 5.99328 6.00692 6.14274 6.26220 6.32780 6.47940 6.61809 6.74568 6.87675 6.96929 7.56551 7.78093 7.94841 8.28258 8.38522 9.16262 9.88769 10.07514 11.37824 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.023174 B = 0.002201 C = 0.002164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.972901 B =12716.501459 C =12935.191116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.174 3.826 3 H 0.061 0.939 4 N -0.744 5.744 5 C -0.244 4.244 6 H 0.091 0.909 7 C 0.007 3.993 8 N -0.932 5.932 9 Si 0.881 3.119 10 H -0.283 1.283 11 H -0.290 1.290 12 H -0.276 1.276 13 C 0.135 3.865 14 H 0.088 0.912 15 C -0.161 4.161 16 N -0.717 5.717 17 C 0.494 3.506 18 O -0.532 6.532 19 C 0.098 3.902 20 N -0.595 5.595 21 C 0.066 3.934 22 C 0.597 3.403 23 O -0.525 6.525 24 C -0.267 4.267 25 C -0.053 4.053 26 C -0.151 4.151 27 C -0.258 4.258 28 S 0.226 5.774 29 H 0.036 0.964 30 H 0.052 0.948 31 H 0.062 0.938 32 H 0.363 0.637 33 H 0.260 0.740 34 H 0.053 0.947 35 H 0.066 0.934 36 H 0.059 0.941 37 H 0.399 0.601 38 H 0.113 0.887 39 H 0.117 0.883 40 H 0.070 0.930 41 H 0.094 0.906 42 H 0.079 0.921 43 H 0.152 0.848 44 H 0.141 0.859 45 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.202 3.275 -31.359 31.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.064 3.936 3 H 0.079 0.921 4 N -0.389 5.389 5 C -0.374 4.374 6 H 0.109 0.891 7 C -0.190 4.190 8 N -0.579 5.579 9 Si 0.711 3.289 10 H -0.209 1.209 11 H -0.216 1.216 12 H -0.203 1.203 13 C 0.030 3.970 14 H 0.106 0.894 15 C -0.220 4.220 16 N -0.371 5.371 17 C 0.278 3.722 18 O -0.408 6.408 19 C -0.029 4.029 20 N -0.327 5.327 21 C -0.079 4.079 22 C 0.385 3.615 23 O -0.402 6.402 24 C -0.387 4.387 25 C -0.086 4.086 26 C -0.181 4.181 27 C -0.395 4.395 28 S 0.495 5.505 29 H 0.055 0.945 30 H 0.071 0.929 31 H 0.081 0.919 32 H 0.198 0.802 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.085 0.915 36 H 0.078 0.922 37 H 0.235 0.765 38 H 0.131 0.869 39 H 0.135 0.865 40 H 0.089 0.911 41 H 0.112 0.888 42 H 0.097 0.903 43 H 0.170 0.830 44 H 0.159 0.841 45 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 0.589 4.068 -30.731 31.005 hybrid contribution -0.287 -2.621 -0.298 2.653 sum 0.301 1.447 -31.029 31.064 Atomic orbital electron populations 1.22507 0.98787 1.01353 1.00280 1.20327 0.92365 0.95808 0.85148 0.92143 1.42808 1.79867 1.09481 1.06709 1.19036 1.37270 0.95571 0.85540 0.89108 1.24653 1.01252 0.97490 0.95556 1.69696 1.52423 1.35567 1.00264 0.86614 0.78639 0.86745 0.76909 1.20941 1.21644 1.20257 1.21323 0.99080 0.92706 0.83928 0.89368 1.22161 1.01828 0.96064 1.01911 1.46167 1.25861 1.56845 1.08216 1.21047 0.85489 0.80807 0.84882 1.90712 1.22546 1.42242 1.85285 1.21382 0.95310 1.02273 0.83933 1.47120 1.34078 1.23534 1.27951 1.22064 0.90187 0.93030 1.02594 1.16949 0.83020 0.80532 0.80967 1.90838 1.33474 1.44627 1.71291 1.24508 1.07762 1.01272 1.05178 1.20794 0.97504 0.97338 0.93013 1.20014 0.98265 0.99242 1.00621 1.25911 1.06489 1.01105 1.06002 1.83515 1.31143 1.16441 1.19439 0.94483 0.92903 0.91884 0.80219 0.93006 0.92759 0.91495 0.92154 0.76485 0.86946 0.86525 0.91135 0.88785 0.90343 0.83001 0.84122 0.81820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.67 9.01 37.16 0.33 -2.34 16 2 C 0.17 3.15 2.93 -67.93 -0.20 2.95 16 3 H 0.06 1.13 8.08 -51.93 -0.42 0.71 16 4 N -0.74 -17.12 4.84 -53.42 -0.26 -17.37 16 5 C -0.24 -6.73 10.41 -15.06 -0.16 -6.89 16 6 H 0.09 2.66 8.06 -52.49 -0.42 2.23 16 7 C 0.01 0.19 5.50 -17.43 -0.10 0.09 16 8 N -0.93 -28.97 13.97 55.49 0.78 -28.20 16 9 Si 0.88 22.13 27.74 -169.99 -4.71 17.41 16 10 H -0.28 -7.11 7.11 56.52 0.40 -6.71 16 11 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 12 H -0.28 -6.54 6.52 56.52 0.37 -6.17 16 13 C 0.13 2.19 2.62 -67.93 -0.18 2.01 16 14 H 0.09 1.64 7.58 -51.93 -0.39 1.24 16 15 C -0.16 -2.66 9.00 37.16 0.33 -2.32 16 16 N -0.72 -9.16 4.99 -53.81 -0.27 -9.43 16 17 C 0.49 6.68 7.86 -10.98 -0.09 6.59 16 18 O -0.53 -9.48 16.09 5.56 0.09 -9.39 16 19 C 0.10 0.93 5.86 -5.20 -0.03 0.90 16 20 N -0.59 -6.24 2.36 -184.55 -0.44 -6.68 16 21 C 0.07 0.47 8.92 59.85 0.53 1.00 16 22 C 0.60 7.73 7.64 -12.89 -0.10 7.63 16 23 O -0.52 -8.50 16.43 5.19 0.09 -8.42 16 24 C -0.27 -2.86 6.23 -36.79 -0.23 -3.09 16 25 C -0.05 -0.53 10.02 -40.43 -0.41 -0.93 16 26 C -0.15 -1.17 10.15 -41.42 -0.42 -1.59 16 27 C -0.26 -1.75 10.92 29.18 0.32 -1.43 16 28 S 0.23 1.58 17.90 -107.50 -1.92 -0.34 16 29 H 0.04 0.44 6.29 -51.93 -0.33 0.11 16 30 H 0.05 0.84 6.57 -51.93 -0.34 0.50 16 31 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 32 H 0.36 8.34 3.63 -40.82 -0.15 8.20 16 33 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 34 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 35 H 0.07 1.18 6.29 -51.93 -0.33 0.86 16 36 H 0.06 0.92 6.57 -51.93 -0.34 0.58 16 37 H 0.40 3.95 6.58 -40.82 -0.27 3.68 16 38 H 0.11 0.62 8.07 -51.93 -0.42 0.20 16 39 H 0.12 1.08 7.42 -51.93 -0.39 0.70 16 40 H 0.07 0.32 7.76 -51.93 -0.40 -0.08 16 41 H 0.09 0.59 8.02 -51.93 -0.42 0.17 16 42 H 0.08 0.59 4.62 -23.27 -0.11 0.48 16 43 H 0.15 1.49 8.06 -52.49 -0.42 1.07 16 44 H 0.14 0.80 8.06 -52.49 -0.42 0.38 16 45 H 0.16 0.72 8.06 -52.48 -0.42 0.29 16 LS Contribution 376.42 15.07 5.67 5.67 Total: -1.00 -36.75 376.42 -7.36 -44.11 By element: Atomic # 1 Polarization: 16.04 SS G_CDS: -6.00 Total: 10.04 kcal Atomic # 6 Polarization: 2.97 SS G_CDS: -0.38 Total: 2.59 kcal Atomic # 7 Polarization: -61.49 SS G_CDS: -0.19 Total: -61.67 kcal Atomic # 8 Polarization: -17.98 SS G_CDS: 0.17 Total: -17.81 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -4.71 Total: 17.41 kcal Atomic # 16 Polarization: 1.58 SS G_CDS: -1.92 Total: -0.34 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -36.75 -7.36 -44.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700400164.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.614 kcal (2) G-P(sol) polarization free energy of solvation -36.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds