Wall clock time and date at job start Sat Apr 11 2020 05:40:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47460 * 2 1 4 4 N 1.46504 * 109.47134 * 119.99803 * 2 1 3 5 5 C 1.36946 * 119.99723 * 274.72809 * 4 2 1 6 6 H 1.08003 * 119.99612 * 0.26664 * 5 4 2 7 7 C 1.38813 * 119.99861 * 180.27834 * 5 4 2 8 8 N 1.31614 * 119.99813 * 180.02562 * 7 5 4 9 9 Si 1.86796 * 119.99965 * 359.97438 * 7 5 4 10 10 H 1.48506 * 109.46834 * 90.00661 * 9 7 5 11 11 H 1.48498 * 109.46982 * 210.00364 * 9 7 5 12 12 H 1.48499 * 109.47377 * 330.00702 * 9 7 5 13 13 C 1.52996 * 109.47545 * 239.99495 * 2 1 3 14 14 H 1.09003 * 109.47548 * 300.00087 * 13 2 1 15 15 C 1.52999 * 109.47545 * 180.02562 * 13 2 1 16 16 N 1.46498 * 109.46905 * 59.99808 * 13 2 1 17 17 C 1.34782 * 120.00332 * 205.00165 * 16 13 2 18 18 O 1.21273 * 119.99471 * 0.02562 * 17 16 13 19 19 C 1.50700 * 119.99932 * 180.02562 * 17 16 13 20 20 N 1.46502 * 109.46563 * 179.97438 * 19 17 16 21 21 C 1.46498 * 120.00054 * 90.00154 * 20 19 17 22 22 C 1.34775 * 119.99962 * 269.99729 * 20 19 17 23 23 O 1.21699 * 120.00386 * 6.06640 * 22 20 19 24 24 C 1.46583 * 120.00003 * 186.07139 * 22 20 19 25 25 C 1.36645 * 125.45712 * 186.82883 * 24 22 20 26 26 C 1.37474 * 113.29656 * 179.97438 * 25 24 22 27 27 C 1.33814 * 115.10171 * 359.97438 * 26 25 24 28 28 S 1.70616 * 110.95412 * 359.72276 * 27 26 25 29 29 H 1.09001 * 109.46690 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47164 * 300.00008 * 1 2 3 31 31 H 1.08995 * 109.47075 * 60.00572 * 1 2 3 32 32 H 0.96996 * 120.00587 * 94.99955 * 4 2 1 33 33 H 0.96995 * 120.00084 * 180.02562 * 8 7 5 34 34 H 1.08995 * 109.47075 * 59.99933 * 15 13 2 35 35 H 1.09000 * 109.47164 * 180.02562 * 15 13 2 36 36 H 1.09001 * 109.46690 * 300.00022 * 15 13 2 37 37 H 0.97005 * 120.00341 * 25.00512 * 16 13 2 38 38 H 1.08998 * 109.47144 * 299.99304 * 19 17 16 39 39 H 1.08997 * 109.47348 * 60.00277 * 19 17 16 40 40 H 1.09005 * 109.47146 * 95.95735 * 21 20 19 41 41 H 1.08998 * 109.46901 * 215.95718 * 21 20 19 42 42 H 1.08999 * 109.47153 * 335.95694 * 21 20 19 43 43 H 1.08004 * 123.35459 * 359.97001 * 25 24 22 44 44 H 1.08005 * 122.44951 * 180.02562 * 26 25 24 45 45 H 1.08006 * 124.52426 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1544 -0.0060 2.3744 6 1 1.8976 1.0420 2.4228 7 6 2.6226 -0.6589 3.5064 8 7 2.7529 -0.0010 4.6389 9 14 3.0663 -2.4714 3.4228 10 1 4.4974 -2.6141 3.0523 11 1 2.8331 -3.0998 4.7479 12 1 2.2215 -3.1413 2.4016 13 6 2.0401 -0.7213 -1.2491 14 1 1.6768 -1.7490 -1.2491 15 6 3.5701 -0.7219 -1.2488 16 7 1.5517 -0.0308 -2.4453 17 6 1.4230 -0.7032 -3.6063 18 8 1.7111 -1.8800 -3.6605 19 6 0.9212 0.0073 -4.8369 20 7 0.8725 -0.9341 -5.9584 21 6 -0.3436 -1.7112 -6.2102 22 6 1.9464 -1.0851 -6.7586 23 8 2.9918 -0.5245 -6.4865 24 6 1.8553 -1.9246 -7.9568 25 6 2.9005 -2.2613 -8.7701 26 6 2.5324 -3.0618 -9.8253 27 6 1.2316 -3.3716 -9.8761 28 16 0.3854 -2.6673 -8.5727 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5137 -0.8900 32 1 2.2490 -1.6317 1.1528 33 1 3.0804 -0.4571 5.4298 34 1 3.9330 -1.2359 -0.3588 35 1 3.9334 -1.2354 -2.1390 36 1 3.9337 0.3057 -1.2486 37 1 1.3210 0.9104 -2.4019 38 1 -0.0779 0.3997 -4.6479 39 1 1.5941 0.8290 -5.0818 40 1 -0.9472 -1.2071 -6.9650 41 1 -0.0725 -2.7051 -6.5660 42 1 -0.9160 -1.7995 -5.2868 43 1 3.9149 -1.9313 -8.6008 44 1 3.2414 -3.4156 -10.5592 45 1 0.7786 -3.9887 -10.6379 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700400165.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:48 Heat of formation + Delta-G solvation = -9.757405 kcal Electronic energy + Delta-G solvation = -26984.775558 eV Core-core repulsion = 23130.195531 eV Total energy + Delta-G solvation = -3854.580027 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.57064 -39.35474 -37.84555 -36.88829 -35.68779 -34.02862 -31.95193 -30.97320 -29.87734 -28.90839 -28.40875 -27.01612 -24.84654 -23.89977 -22.80905 -21.43844 -20.34588 -20.01862 -19.44161 -18.40717 -17.95330 -17.30480 -16.72805 -16.20443 -15.96469 -15.48026 -15.18458 -14.90481 -14.39515 -14.07107 -13.81188 -13.75068 -13.53698 -13.45198 -13.36586 -13.10404 -12.94258 -12.92315 -12.56541 -12.50231 -12.29562 -12.04137 -11.79392 -11.35000 -11.09530 -11.02396 -10.91921 -10.78653 -10.35822 -10.30715 -10.11604 -9.96197 -9.61321 -9.29904 -9.06293 -9.03642 -8.83555 -8.78817 -7.31515 -5.79395 -3.15704 0.16916 1.12024 1.55992 2.05072 2.39966 2.66934 2.92025 3.33854 3.38481 3.41782 3.46172 4.15419 4.56310 4.57808 4.63094 4.70365 4.79877 4.93423 4.94438 5.10994 5.13872 5.17419 5.23380 5.37514 5.42851 5.58816 5.64615 5.72685 5.78915 5.92650 5.97520 6.00593 6.10788 6.24928 6.28582 6.37570 6.53668 6.68971 6.80932 6.88244 6.91453 7.58167 7.78659 7.94855 8.29681 8.39105 9.16570 9.89298 10.08147 11.38596 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.025303 B = 0.002177 C = 0.002136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.331314 B =12859.995075 C =13107.154463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.173 3.827 3 H 0.060 0.940 4 N -0.742 5.742 5 C -0.242 4.242 6 H 0.091 0.909 7 C 0.006 3.994 8 N -0.932 5.932 9 Si 0.881 3.119 10 H -0.283 1.283 11 H -0.291 1.291 12 H -0.276 1.276 13 C 0.134 3.866 14 H 0.082 0.918 15 C -0.154 4.154 16 N -0.715 5.715 17 C 0.495 3.505 18 O -0.532 6.532 19 C 0.099 3.901 20 N -0.596 5.596 21 C 0.066 3.934 22 C 0.596 3.404 23 O -0.522 6.522 24 C -0.267 4.267 25 C -0.053 4.053 26 C -0.151 4.151 27 C -0.256 4.256 28 S 0.223 5.777 29 H 0.045 0.955 30 H 0.059 0.941 31 H 0.039 0.961 32 H 0.362 0.638 33 H 0.260 0.740 34 H 0.072 0.928 35 H 0.049 0.951 36 H 0.056 0.944 37 H 0.399 0.601 38 H 0.112 0.888 39 H 0.116 0.884 40 H 0.069 0.931 41 H 0.080 0.920 42 H 0.092 0.908 43 H 0.153 0.847 44 H 0.142 0.858 45 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.709 -2.624 -31.505 32.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.063 3.937 3 H 0.078 0.922 4 N -0.386 5.386 5 C -0.372 4.372 6 H 0.109 0.891 7 C -0.190 4.190 8 N -0.580 5.580 9 Si 0.711 3.289 10 H -0.210 1.210 11 H -0.217 1.217 12 H -0.202 1.202 13 C 0.029 3.971 14 H 0.100 0.900 15 C -0.213 4.213 16 N -0.367 5.367 17 C 0.279 3.721 18 O -0.408 6.408 19 C -0.028 4.028 20 N -0.328 5.328 21 C -0.079 4.079 22 C 0.384 3.616 23 O -0.399 6.399 24 C -0.387 4.387 25 C -0.087 4.087 26 C -0.181 4.181 27 C -0.393 4.393 28 S 0.491 5.509 29 H 0.064 0.936 30 H 0.078 0.922 31 H 0.057 0.943 32 H 0.195 0.805 33 H 0.070 0.930 34 H 0.091 0.909 35 H 0.068 0.932 36 H 0.075 0.925 37 H 0.233 0.767 38 H 0.130 0.870 39 H 0.133 0.867 40 H 0.087 0.913 41 H 0.098 0.902 42 H 0.111 0.889 43 H 0.170 0.830 44 H 0.159 0.841 45 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -9.452 -3.046 -30.774 32.337 hybrid contribution 1.677 -1.085 -0.407 2.039 sum -7.775 -4.131 -31.181 32.400 Atomic orbital electron populations 1.22407 0.98564 1.01042 1.00341 1.20364 0.92272 0.95912 0.85122 0.92203 1.42659 1.79856 1.09289 1.06786 1.19012 1.37073 0.95500 0.85617 0.89124 1.24649 1.01273 0.97461 0.95576 1.69690 1.52292 1.35599 1.00408 0.86602 0.78613 0.86767 0.76885 1.20968 1.21725 1.20240 1.21332 0.94466 0.97443 0.83811 0.89968 1.22058 0.94973 1.02227 1.01994 1.46003 1.67098 1.13986 1.09658 1.21008 0.78369 0.87936 0.84750 1.90706 1.49480 1.16003 1.84635 1.21378 1.04221 0.92441 0.84723 1.47120 1.14372 1.42688 1.28643 1.22013 0.86903 0.96000 1.02976 1.16946 0.83075 0.80214 0.81352 1.90849 1.27833 1.48073 1.73127 1.24526 0.98698 1.11609 1.03836 1.20810 0.99867 0.95460 0.92536 1.20025 0.95972 1.01684 1.00446 1.25840 0.99960 1.07725 1.05741 1.83480 1.09184 1.42906 1.15282 0.93601 0.92162 0.94251 0.80483 0.93022 0.90882 0.93195 0.92531 0.76681 0.87004 0.86654 0.91278 0.90238 0.88896 0.82952 0.84067 0.81775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.67 9.34 37.16 0.35 -2.32 16 2 C 0.17 3.13 2.52 -67.93 -0.17 2.95 16 3 H 0.06 1.09 8.08 -51.93 -0.42 0.67 16 4 N -0.74 -16.96 4.23 -53.42 -0.23 -17.18 16 5 C -0.24 -6.62 10.41 -15.05 -0.16 -6.77 16 6 H 0.09 2.64 8.06 -52.48 -0.42 2.22 16 7 C 0.01 0.18 5.50 -17.43 -0.10 0.09 16 8 N -0.93 -28.93 13.97 55.49 0.78 -28.16 16 9 Si 0.88 22.10 27.73 -169.99 -4.71 17.39 16 10 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 11 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 12 H -0.28 -6.59 6.52 56.52 0.37 -6.22 16 13 C 0.13 2.18 2.21 -67.93 -0.15 2.03 16 14 H 0.08 1.49 7.58 -51.93 -0.39 1.10 16 15 C -0.15 -2.64 9.33 37.16 0.35 -2.29 16 16 N -0.72 -9.05 4.38 -53.81 -0.24 -9.29 16 17 C 0.50 6.66 7.86 -10.98 -0.09 6.57 16 18 O -0.53 -9.47 16.09 5.56 0.09 -9.38 16 19 C 0.10 0.93 5.82 -5.19 -0.03 0.90 16 20 N -0.60 -6.20 2.36 -184.55 -0.44 -6.63 16 21 C 0.07 0.46 8.83 59.85 0.53 0.99 16 22 C 0.60 7.68 7.62 -12.90 -0.10 7.58 16 23 O -0.52 -8.54 16.49 5.19 0.09 -8.45 16 24 C -0.27 -2.80 6.21 -36.79 -0.23 -3.03 16 25 C -0.05 -0.52 10.02 -40.44 -0.41 -0.93 16 26 C -0.15 -1.14 10.15 -41.41 -0.42 -1.56 16 27 C -0.26 -1.67 10.92 29.18 0.32 -1.35 16 28 S 0.22 1.50 17.89 -107.50 -1.92 -0.42 16 29 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 31 H 0.04 0.50 7.44 -51.93 -0.39 0.11 16 32 H 0.36 8.35 5.44 -40.82 -0.22 8.13 16 33 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 34 H 0.07 1.36 7.44 -51.93 -0.39 0.97 16 35 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.40 3.84 8.39 -40.82 -0.34 3.50 16 38 H 0.11 0.61 8.07 -51.93 -0.42 0.19 16 39 H 0.12 1.06 7.51 -51.93 -0.39 0.67 16 40 H 0.07 0.31 7.50 -51.93 -0.39 -0.08 16 41 H 0.08 0.59 5.11 -27.32 -0.14 0.45 16 42 H 0.09 0.57 8.03 -51.93 -0.42 0.16 16 43 H 0.15 1.48 8.06 -52.48 -0.42 1.06 16 44 H 0.14 0.77 8.06 -52.48 -0.42 0.35 16 45 H 0.16 0.67 8.06 -52.48 -0.42 0.25 16 LS Contribution 384.32 15.07 5.79 5.79 Total: -1.00 -36.77 384.32 -7.55 -44.32 By element: Atomic # 1 Polarization: 15.59 SS G_CDS: -6.46 Total: 9.14 kcal Atomic # 6 Polarization: 3.18 SS G_CDS: -0.30 Total: 2.88 kcal Atomic # 7 Polarization: -61.14 SS G_CDS: -0.12 Total: -61.26 kcal Atomic # 8 Polarization: -18.01 SS G_CDS: 0.18 Total: -17.83 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -4.71 Total: 17.39 kcal Atomic # 16 Polarization: 1.50 SS G_CDS: -1.92 Total: -0.42 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -36.77 -7.55 -44.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700400165.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.559 kcal (2) G-P(sol) polarization free energy of solvation -36.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds