Wall clock time and date at job start Sat Apr 11 2020 05:40:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47522 * 2 1 4 4 N 1.46506 * 109.47095 * 239.99792 * 2 1 3 5 5 C 1.36936 * 119.99736 * 84.99985 * 4 2 1 6 6 H 1.08007 * 120.00298 * 359.97438 * 5 4 2 7 7 C 1.38809 * 119.99886 * 180.02562 * 5 4 2 8 8 N 1.31620 * 120.00371 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 120.00040 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.46905 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.46982 * 119.99933 * 9 7 5 12 12 H 1.48491 * 109.47383 * 239.99996 * 9 7 5 13 13 C 1.53003 * 109.47317 * 120.00451 * 2 1 3 14 14 H 1.08996 * 109.47150 * 185.00003 * 13 2 1 15 15 C 1.52996 * 109.47387 * 64.99345 * 13 2 1 16 16 N 1.46506 * 109.46465 * 304.99321 * 13 2 1 17 17 C 1.34780 * 119.99577 * 204.99654 * 16 13 2 18 18 O 1.21277 * 120.00186 * 0.02562 * 17 16 13 19 19 C 1.50699 * 119.99717 * 180.02562 * 17 16 13 20 20 N 1.46498 * 109.47183 * 180.02562 * 19 17 16 21 21 C 1.46497 * 119.99861 * 270.00043 * 20 19 17 22 22 C 1.34774 * 120.00027 * 89.99874 * 20 19 17 23 23 O 1.21700 * 120.00295 * 0.13572 * 22 20 19 24 24 C 1.46587 * 119.99717 * 180.13223 * 22 20 19 25 25 C 1.36653 * 125.45710 * 171.40021 * 24 22 20 26 26 C 1.37470 * 113.29601 * 179.97438 * 25 24 22 27 27 C 1.33810 * 115.10323 * 359.97438 * 26 25 24 28 28 S 1.70622 * 110.95575 * 359.97438 * 27 26 25 29 29 H 1.08998 * 109.47088 * 59.99740 * 1 2 3 30 30 H 1.09003 * 109.47145 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46837 * 300.00176 * 1 2 3 32 32 H 0.96998 * 120.00123 * 265.00374 * 4 2 1 33 33 H 0.96995 * 120.00327 * 180.02562 * 8 7 5 34 34 H 1.09005 * 109.47015 * 60.00208 * 15 13 2 35 35 H 1.08998 * 109.47322 * 180.02562 * 15 13 2 36 36 H 1.08996 * 109.47513 * 300.00436 * 15 13 2 37 37 H 0.96995 * 120.00326 * 25.00501 * 16 13 2 38 38 H 1.09004 * 109.47263 * 60.00604 * 19 17 16 39 39 H 1.09001 * 109.47041 * 300.00569 * 19 17 16 40 40 H 1.08996 * 109.47470 * 263.45634 * 21 20 19 41 41 H 1.09006 * 109.47528 * 23.46122 * 21 20 19 42 42 H 1.09000 * 109.47474 * 143.45659 * 21 20 19 43 43 H 1.07997 * 123.34915 * 0.27103 * 25 24 22 44 44 H 1.08002 * 122.44916 * 180.02562 * 26 25 24 45 45 H 1.08004 * 124.52467 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1962 5 6 2.1491 -0.0076 -2.3758 6 1 1.8918 1.0403 -2.4244 7 6 2.6113 -0.6620 -3.5093 8 7 2.9243 -1.9391 -3.4502 9 14 2.7890 0.2696 -5.1186 10 1 2.3752 1.6821 -4.9211 11 1 4.2057 0.2267 -5.5616 12 1 1.9279 -0.3590 -6.1522 13 6 2.0400 -0.7214 1.2492 14 1 3.1263 -0.6444 1.2951 15 6 1.6352 -2.1955 1.1880 16 7 1.4559 -0.1036 2.4423 17 6 2.0914 -0.1939 3.6275 18 8 3.1469 -0.7860 3.7062 19 6 1.4903 0.4411 4.8550 20 7 2.3658 0.2046 6.0055 21 6 2.1813 -0.9902 6.8330 22 6 3.3409 1.0862 6.3028 23 8 3.4926 2.0800 5.6169 24 6 4.2187 0.8481 7.4523 25 6 5.3378 1.5702 7.7581 26 6 5.9746 1.1309 8.8945 27 6 5.3985 0.0860 9.5001 28 16 3.9989 -0.4107 8.6601 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 2.2490 -1.6318 -1.1526 33 1 3.2476 -2.3963 -4.2422 34 1 2.0698 -2.6551 0.3002 35 1 1.9982 -2.7093 2.0781 36 1 0.5489 -2.2724 1.1421 37 1 0.6119 0.3702 2.3794 38 1 0.5106 0.0037 5.0476 39 1 1.3840 1.5139 4.6940 40 1 1.5773 -0.7387 7.7047 41 1 1.6761 -1.7609 6.2508 42 1 3.1534 -1.3600 7.1590 43 1 5.6846 2.4059 7.1686 44 1 6.8737 1.5957 9.2714 45 1 5.7698 -0.3808 10.4006 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700400166.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:50 Heat of formation + Delta-G solvation = -8.453851 kcal Electronic energy + Delta-G solvation = -26924.590666 eV Core-core repulsion = 23070.067165 eV Total energy + Delta-G solvation = -3854.523501 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.51588 -39.30457 -37.79223 -36.88541 -35.63677 -33.89258 -31.94204 -30.83910 -29.57955 -28.33037 -28.20444 -26.98537 -24.85903 -24.34478 -23.19353 -21.58115 -20.24870 -19.39048 -19.19965 -18.35446 -17.65201 -17.22166 -16.67154 -16.14342 -15.72046 -15.52029 -15.15695 -14.77730 -14.51166 -14.19404 -13.84827 -13.74391 -13.51139 -13.46136 -13.27475 -13.04968 -12.93061 -12.78512 -12.60375 -12.37465 -12.14345 -11.85048 -11.63863 -11.30015 -10.94418 -10.92189 -10.83107 -10.47362 -10.30437 -10.23402 -10.06028 -9.95246 -9.68203 -9.23687 -8.98559 -8.93805 -8.79352 -8.72174 -6.99934 -5.78133 -3.07505 0.23279 1.17649 1.61392 2.11285 2.44869 2.73918 2.98489 3.41961 3.44537 3.49986 3.51428 4.20305 4.58574 4.59292 4.68654 4.77546 4.84083 4.98828 5.00470 5.17296 5.20252 5.25838 5.36403 5.48578 5.63375 5.64715 5.65860 5.82548 5.84679 5.97288 6.03960 6.06610 6.15136 6.29142 6.40113 6.47590 6.62010 6.72939 6.92466 6.93082 7.07702 7.66288 7.69938 7.84300 8.37116 8.40964 9.51787 10.07100 10.41917 11.44569 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.022299 B = 0.002123 C = 0.002063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.371056 B =13188.015892 C =13567.120094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.167 3.833 3 H 0.052 0.948 4 N -0.720 5.720 5 C -0.239 4.239 6 H 0.071 0.929 7 C -0.013 4.013 8 N -0.932 5.932 9 Si 0.907 3.093 10 H -0.280 1.280 11 H -0.291 1.291 12 H -0.292 1.292 13 C 0.137 3.863 14 H 0.086 0.914 15 C -0.157 4.157 16 N -0.717 5.717 17 C 0.493 3.507 18 O -0.532 6.532 19 C 0.097 3.903 20 N -0.595 5.595 21 C 0.067 3.933 22 C 0.596 3.404 23 O -0.523 6.523 24 C -0.266 4.266 25 C -0.053 4.053 26 C -0.150 4.150 27 C -0.259 4.259 28 S 0.224 5.776 29 H 0.057 0.943 30 H 0.053 0.947 31 H 0.033 0.967 32 H 0.386 0.614 33 H 0.255 0.745 34 H 0.076 0.924 35 H 0.048 0.952 36 H 0.056 0.944 37 H 0.398 0.602 38 H 0.111 0.889 39 H 0.117 0.883 40 H 0.070 0.930 41 H 0.092 0.908 42 H 0.079 0.921 43 H 0.153 0.847 44 H 0.141 0.859 45 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.672 2.036 29.707 30.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.057 3.943 3 H 0.070 0.930 4 N -0.363 5.363 5 C -0.370 4.370 6 H 0.089 0.911 7 C -0.209 4.209 8 N -0.580 5.580 9 Si 0.739 3.261 10 H -0.205 1.205 11 H -0.219 1.219 12 H -0.219 1.219 13 C 0.032 3.968 14 H 0.104 0.896 15 C -0.216 4.216 16 N -0.371 5.371 17 C 0.277 3.723 18 O -0.408 6.408 19 C -0.029 4.029 20 N -0.327 5.327 21 C -0.078 4.078 22 C 0.385 3.615 23 O -0.400 6.400 24 C -0.386 4.386 25 C -0.086 4.086 26 C -0.181 4.181 27 C -0.395 4.395 28 S 0.492 5.508 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.052 0.948 32 H 0.222 0.778 33 H 0.065 0.935 34 H 0.095 0.905 35 H 0.067 0.933 36 H 0.075 0.925 37 H 0.233 0.767 38 H 0.129 0.871 39 H 0.135 0.865 40 H 0.088 0.912 41 H 0.111 0.889 42 H 0.097 0.903 43 H 0.171 0.829 44 H 0.159 0.841 45 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -3.841 1.107 29.517 29.786 hybrid contribution 1.010 1.324 -1.100 1.996 sum -2.831 2.432 28.416 28.660 Atomic orbital electron populations 1.22528 0.99294 1.01191 0.99763 1.20370 0.92177 0.95658 0.86145 0.93024 1.42461 1.78220 1.10771 1.04854 1.19274 1.36671 0.93971 0.87089 0.91058 1.24748 1.02014 0.96012 0.98134 1.69665 1.50814 1.08667 1.28865 0.86110 0.77337 0.78783 0.83905 1.20547 1.21850 1.21892 1.21318 0.99039 0.92769 0.83656 0.89551 1.22123 1.01412 0.95843 1.02175 1.46217 1.25808 1.56749 1.08333 1.21025 0.85551 0.80701 0.85063 1.90713 1.22073 1.42538 1.85448 1.21383 0.93462 1.03832 0.84227 1.47113 1.33472 1.23441 1.28699 1.22047 1.02592 0.87897 0.95260 1.16952 0.79115 0.82652 0.82828 1.90849 1.69759 1.28301 1.51087 1.24510 1.04617 1.05975 1.03491 1.20807 0.92513 0.99198 0.96115 1.20017 1.02811 0.98562 0.96689 1.25898 1.04697 1.02780 1.06164 1.83478 1.23252 1.29159 1.14899 0.92387 0.92837 0.94839 0.77810 0.93504 0.90548 0.93272 0.92546 0.76667 0.87117 0.86534 0.91211 0.88910 0.90345 0.82945 0.84114 0.81846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.76 9.01 37.16 0.33 -2.42 16 2 C 0.17 3.24 2.93 -67.93 -0.20 3.04 16 3 H 0.05 1.05 8.08 -51.93 -0.42 0.63 16 4 N -0.72 -17.75 5.03 -53.42 -0.27 -18.02 16 5 C -0.24 -6.58 9.93 -15.06 -0.15 -6.73 16 6 H 0.07 1.91 7.83 -52.48 -0.41 1.50 16 7 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 8 N -0.93 -28.07 13.06 55.49 0.72 -27.35 16 9 Si 0.91 22.46 29.55 -169.99 -5.02 17.44 16 10 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 12 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 13 C 0.14 2.38 2.62 -67.93 -0.18 2.20 16 14 H 0.09 1.78 7.58 -51.93 -0.39 1.39 16 15 C -0.16 -2.63 9.00 37.16 0.33 -2.29 16 16 N -0.72 -9.77 4.99 -53.80 -0.27 -10.04 16 17 C 0.49 7.04 7.86 -10.98 -0.09 6.95 16 18 O -0.53 -9.92 16.09 5.56 0.09 -9.83 16 19 C 0.10 0.98 5.86 -5.20 -0.03 0.95 16 20 N -0.60 -6.53 2.36 -184.55 -0.44 -6.96 16 21 C 0.07 0.49 8.92 59.85 0.53 1.03 16 22 C 0.60 8.09 7.64 -12.89 -0.10 7.99 16 23 O -0.52 -8.91 16.43 5.19 0.09 -8.82 16 24 C -0.27 -2.98 6.23 -36.79 -0.23 -3.21 16 25 C -0.05 -0.56 10.02 -40.43 -0.41 -0.96 16 26 C -0.15 -1.23 10.15 -41.42 -0.42 -1.65 16 27 C -0.26 -1.84 10.92 29.18 0.32 -1.52 16 28 S 0.22 1.63 17.90 -107.50 -1.92 -0.29 16 29 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.05 0.88 6.56 -51.93 -0.34 0.54 16 31 H 0.03 0.42 6.29 -51.93 -0.33 0.09 16 32 H 0.39 10.05 5.77 -40.82 -0.24 9.81 16 33 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 34 H 0.08 1.45 6.29 -51.93 -0.33 1.12 16 35 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 36 H 0.06 0.85 6.56 -51.93 -0.34 0.51 16 37 H 0.40 4.25 6.58 -40.82 -0.27 3.98 16 38 H 0.11 0.65 8.07 -51.93 -0.42 0.23 16 39 H 0.12 1.16 7.42 -51.93 -0.39 0.78 16 40 H 0.07 0.33 7.76 -51.93 -0.40 -0.07 16 41 H 0.09 0.59 8.02 -51.93 -0.42 0.17 16 42 H 0.08 0.61 4.62 -23.27 -0.11 0.50 16 43 H 0.15 1.59 8.06 -52.49 -0.42 1.17 16 44 H 0.14 0.86 8.06 -52.49 -0.42 0.44 16 45 H 0.16 0.76 8.06 -52.48 -0.42 0.34 16 LS Contribution 379.53 15.07 5.72 5.72 Total: -1.00 -36.33 379.53 -7.72 -44.04 By element: Atomic # 1 Polarization: 17.25 SS G_CDS: -6.04 Total: 11.21 kcal Atomic # 6 Polarization: 3.28 SS G_CDS: -0.37 Total: 2.91 kcal Atomic # 7 Polarization: -62.12 SS G_CDS: -0.25 Total: -62.37 kcal Atomic # 8 Polarization: -18.83 SS G_CDS: 0.17 Total: -18.66 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.44 kcal Atomic # 16 Polarization: 1.63 SS G_CDS: -1.92 Total: -0.29 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -36.33 -7.72 -44.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700400166.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.589 kcal (2) G-P(sol) polarization free energy of solvation -36.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds