Wall clock time and date at job start Sat Apr 11 2020 05:40:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47522 * 2 1 4 4 N 1.46506 * 109.47095 * 239.99792 * 2 1 3 5 5 C 1.36936 * 119.99736 * 84.99985 * 4 2 1 6 6 H 1.08007 * 120.00298 * 359.97438 * 5 4 2 7 7 C 1.38809 * 119.99886 * 180.02562 * 5 4 2 8 8 N 1.31620 * 120.00371 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 120.00040 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.46905 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.46982 * 119.99933 * 9 7 5 12 12 H 1.48491 * 109.47383 * 239.99996 * 9 7 5 13 13 C 1.53003 * 109.47317 * 120.00451 * 2 1 3 14 14 H 1.08996 * 109.47150 * 185.00003 * 13 2 1 15 15 C 1.52996 * 109.47387 * 64.99345 * 13 2 1 16 16 N 1.46506 * 109.46465 * 304.99321 * 13 2 1 17 17 C 1.34780 * 119.99577 * 204.99654 * 16 13 2 18 18 O 1.21277 * 120.00186 * 0.02562 * 17 16 13 19 19 C 1.50699 * 119.99717 * 180.02562 * 17 16 13 20 20 N 1.46498 * 109.47183 * 180.02562 * 19 17 16 21 21 C 1.46497 * 119.99861 * 270.00043 * 20 19 17 22 22 C 1.34774 * 120.00027 * 89.99874 * 20 19 17 23 23 O 1.21700 * 120.00295 * 0.13572 * 22 20 19 24 24 C 1.46587 * 119.99717 * 180.13223 * 22 20 19 25 25 C 1.36653 * 125.45710 * 171.40021 * 24 22 20 26 26 C 1.37470 * 113.29601 * 179.97438 * 25 24 22 27 27 C 1.33810 * 115.10323 * 359.97438 * 26 25 24 28 28 S 1.70622 * 110.95575 * 359.97438 * 27 26 25 29 29 H 1.08998 * 109.47088 * 59.99740 * 1 2 3 30 30 H 1.09003 * 109.47145 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46837 * 300.00176 * 1 2 3 32 32 H 0.96998 * 120.00123 * 265.00374 * 4 2 1 33 33 H 0.96995 * 120.00327 * 180.02562 * 8 7 5 34 34 H 1.09005 * 109.47015 * 60.00208 * 15 13 2 35 35 H 1.08998 * 109.47322 * 180.02562 * 15 13 2 36 36 H 1.08996 * 109.47513 * 300.00436 * 15 13 2 37 37 H 0.96995 * 120.00326 * 25.00501 * 16 13 2 38 38 H 1.09004 * 109.47263 * 60.00604 * 19 17 16 39 39 H 1.09001 * 109.47041 * 300.00569 * 19 17 16 40 40 H 1.08996 * 109.47470 * 263.45634 * 21 20 19 41 41 H 1.09006 * 109.47528 * 23.46122 * 21 20 19 42 42 H 1.09000 * 109.47474 * 143.45659 * 21 20 19 43 43 H 1.07997 * 123.34915 * 0.27103 * 25 24 22 44 44 H 1.08002 * 122.44916 * 180.02562 * 26 25 24 45 45 H 1.08004 * 124.52467 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1962 5 6 2.1491 -0.0076 -2.3758 6 1 1.8918 1.0403 -2.4244 7 6 2.6113 -0.6620 -3.5093 8 7 2.9243 -1.9391 -3.4502 9 14 2.7890 0.2696 -5.1186 10 1 2.3752 1.6821 -4.9211 11 1 4.2057 0.2267 -5.5616 12 1 1.9279 -0.3590 -6.1522 13 6 2.0400 -0.7214 1.2492 14 1 3.1263 -0.6444 1.2951 15 6 1.6352 -2.1955 1.1880 16 7 1.4559 -0.1036 2.4423 17 6 2.0914 -0.1939 3.6275 18 8 3.1469 -0.7860 3.7062 19 6 1.4903 0.4411 4.8550 20 7 2.3658 0.2046 6.0055 21 6 2.1813 -0.9902 6.8330 22 6 3.3409 1.0862 6.3028 23 8 3.4926 2.0800 5.6169 24 6 4.2187 0.8481 7.4523 25 6 5.3378 1.5702 7.7581 26 6 5.9746 1.1309 8.8945 27 6 5.3985 0.0860 9.5001 28 16 3.9989 -0.4107 8.6601 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 2.2490 -1.6318 -1.1526 33 1 3.2476 -2.3963 -4.2422 34 1 2.0698 -2.6551 0.3002 35 1 1.9982 -2.7093 2.0781 36 1 0.5489 -2.2724 1.1421 37 1 0.6119 0.3702 2.3794 38 1 0.5106 0.0037 5.0476 39 1 1.3840 1.5139 4.6940 40 1 1.5773 -0.7387 7.7047 41 1 1.6761 -1.7609 6.2508 42 1 3.1534 -1.3600 7.1590 43 1 5.6846 2.4059 7.1686 44 1 6.8737 1.5957 9.2714 45 1 5.7698 -0.3808 10.4006 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700400166.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:50 Heat of formation + Delta-G solvation = -34.913000 kcal Electronic energy + Delta-G solvation = -26925.738021 eV Core-core repulsion = 23070.067165 eV Total energy + Delta-G solvation = -3855.670856 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.52477 -40.44864 -38.62922 -38.22873 -36.60293 -35.58801 -33.63945 -31.87479 -30.88757 -29.82168 -29.18908 -27.75171 -26.17884 -25.64036 -24.71903 -22.57011 -21.32130 -20.66832 -20.09627 -19.50373 -19.13262 -18.50565 -17.62083 -16.87079 -16.78853 -16.65835 -16.43035 -16.24441 -15.84583 -15.60286 -15.33016 -14.87098 -14.58056 -14.49262 -14.18809 -14.04630 -13.91349 -13.76055 -13.58066 -13.54200 -13.17168 -13.08905 -13.01175 -12.84410 -12.81738 -12.65284 -12.09242 -12.01988 -11.68161 -11.60682 -11.51384 -11.29819 -11.19445 -10.97844 -10.09787 -10.07469 -9.72276 -9.35374 -9.04290 -7.95380 -5.24057 -0.48779 0.51838 1.00660 1.35264 1.46257 1.47602 1.57034 1.61097 1.65617 2.12411 2.32119 2.57657 3.38512 3.47137 3.73179 3.91387 3.97737 4.02358 4.07028 4.14337 4.20899 4.32501 4.34376 4.37545 4.52584 4.55142 4.60711 4.71238 4.73142 4.88669 4.97346 5.00683 5.03290 5.18313 5.20362 5.25784 5.27747 5.37156 5.48876 5.56410 5.64618 6.09593 6.27219 6.56174 6.91703 7.27111 7.33553 8.07891 8.31052 9.28369 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.022299 B = 0.002123 C = 0.002063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.371056 B =13188.015892 C =13567.120094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.163 3.837 3 H 0.040 0.960 4 N -0.734 5.734 5 C -0.237 4.237 6 H 0.076 0.924 7 C -0.077 4.077 8 N -0.969 5.969 9 Si 0.972 3.028 10 H -0.266 1.266 11 H -0.297 1.297 12 H -0.292 1.292 13 C 0.151 3.849 14 H 0.045 0.955 15 C -0.145 4.145 16 N -0.704 5.704 17 C 0.490 3.510 18 O -0.581 6.581 19 C 0.101 3.899 20 N -0.595 5.595 21 C 0.057 3.943 22 C 0.585 3.415 23 O -0.577 6.577 24 C -0.311 4.311 25 C -0.067 4.067 26 C -0.165 4.165 27 C -0.253 4.253 28 S 0.291 5.709 29 H 0.041 0.959 30 H 0.055 0.945 31 H 0.080 0.920 32 H 0.376 0.624 33 H 0.251 0.749 34 H 0.048 0.952 35 H 0.052 0.948 36 H 0.078 0.922 37 H 0.416 0.584 38 H 0.166 0.834 39 H 0.119 0.881 40 H 0.103 0.897 41 H 0.107 0.893 42 H 0.073 0.927 43 H 0.137 0.863 44 H 0.158 0.842 45 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.764 1.863 32.367 32.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.054 3.946 3 H 0.058 0.942 4 N -0.377 5.377 5 C -0.369 4.369 6 H 0.094 0.906 7 C -0.269 4.269 8 N -0.620 5.620 9 Si 0.801 3.199 10 H -0.190 1.190 11 H -0.225 1.225 12 H -0.219 1.219 13 C 0.045 3.955 14 H 0.063 0.937 15 C -0.204 4.204 16 N -0.358 5.358 17 C 0.276 3.724 18 O -0.460 6.460 19 C -0.025 4.025 20 N -0.325 5.325 21 C -0.086 4.086 22 C 0.375 3.625 23 O -0.458 6.458 24 C -0.431 4.431 25 C -0.102 4.102 26 C -0.195 4.195 27 C -0.390 4.390 28 S 0.560 5.440 29 H 0.060 0.940 30 H 0.074 0.926 31 H 0.099 0.901 32 H 0.210 0.790 33 H 0.059 0.941 34 H 0.067 0.933 35 H 0.071 0.929 36 H 0.097 0.903 37 H 0.255 0.745 38 H 0.183 0.817 39 H 0.137 0.863 40 H 0.121 0.879 41 H 0.126 0.874 42 H 0.090 0.910 43 H 0.154 0.846 44 H 0.176 0.824 45 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -6.011 0.952 32.234 32.803 hybrid contribution 1.674 1.354 -1.776 2.791 sum -4.336 2.306 30.458 30.852 Atomic orbital electron populations 1.22337 0.96035 1.01844 1.01335 1.20555 0.94279 0.94589 0.85134 0.94180 1.42662 1.78700 1.10521 1.05823 1.19638 1.34890 0.94225 0.88100 0.90605 1.25544 1.02952 0.96937 1.01477 1.69818 1.52637 1.10184 1.29371 0.85093 0.76649 0.78227 0.79914 1.19045 1.22465 1.21879 1.20826 0.96824 0.93444 0.84432 0.93663 1.21990 1.02525 0.94888 1.00956 1.45971 1.26319 1.56482 1.07075 1.21865 0.84785 0.79729 0.86032 1.90699 1.24279 1.44816 1.86203 1.21585 0.95026 1.03926 0.81935 1.47302 1.32662 1.23798 1.28759 1.22362 1.03045 0.86946 0.96262 1.17432 0.79558 0.82421 0.83113 1.90796 1.71380 1.30552 1.53096 1.24579 1.05099 1.08700 1.04748 1.20937 0.93058 0.99171 0.97062 1.20137 1.03712 0.99409 0.96218 1.26376 1.04313 1.01745 1.06541 1.83083 1.22445 1.26297 1.12149 0.93970 0.92609 0.90127 0.78954 0.94061 0.93338 0.92878 0.90324 0.74510 0.81692 0.86331 0.87878 0.87413 0.90975 0.84559 0.82408 0.78792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.79 9.01 71.98 0.65 -4.14 16 2 C 0.16 6.31 2.93 44.99 0.13 6.44 16 3 H 0.04 1.64 8.08 -2.39 -0.02 1.62 16 4 N -0.73 -36.96 5.03 -322.92 -1.63 -38.58 16 5 C -0.24 -13.19 9.93 84.03 0.83 -12.35 16 6 H 0.08 4.07 7.83 -2.91 -0.02 4.04 16 7 C -0.08 -4.46 5.50 84.86 0.47 -3.99 16 8 N -0.97 -59.94 13.06 21.65 0.28 -59.65 16 9 Si 0.97 46.81 29.55 68.60 2.03 48.84 16 10 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 11 H -0.30 -14.48 7.11 99.48 0.71 -13.77 16 12 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 13 C 0.15 5.27 2.62 44.99 0.12 5.38 16 14 H 0.05 1.96 7.58 -2.39 -0.02 1.95 16 15 C -0.15 -4.82 9.00 71.98 0.65 -4.17 16 16 N -0.70 -18.04 4.99 -442.53 -2.21 -20.25 16 17 C 0.49 13.47 7.86 87.66 0.69 14.16 16 18 O -0.58 -21.96 16.09 -3.02 -0.05 -22.01 16 19 C 0.10 1.81 5.86 85.63 0.50 2.31 16 20 N -0.59 -12.16 2.36 -856.00 -2.02 -14.18 16 21 C 0.06 0.68 8.92 127.77 1.14 1.81 16 22 C 0.58 16.11 7.64 86.42 0.66 16.77 16 23 O -0.58 -20.71 16.43 -4.35 -0.07 -20.78 16 24 C -0.31 -6.97 6.23 24.08 0.15 -6.82 16 25 C -0.07 -1.47 10.02 21.72 0.22 -1.26 16 26 C -0.17 -2.54 10.15 21.08 0.21 -2.33 16 27 C -0.25 -2.92 10.92 66.81 0.73 -2.19 16 28 S 0.29 3.54 17.90 -56.49 -1.01 2.52 16 29 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.05 1.70 6.56 -2.39 -0.02 1.69 16 31 H 0.08 1.70 6.29 -2.39 -0.02 1.68 16 32 H 0.38 20.28 5.77 -92.71 -0.54 19.75 16 33 H 0.25 15.02 8.31 -92.71 -0.77 14.25 16 34 H 0.05 1.89 6.29 -2.38 -0.02 1.87 16 35 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.08 2.23 6.56 -2.39 -0.02 2.21 16 37 H 0.42 7.52 6.58 -92.71 -0.61 6.91 16 38 H 0.17 1.13 8.07 -2.38 -0.02 1.11 16 39 H 0.12 2.16 7.42 -2.39 -0.02 2.15 16 40 H 0.10 0.55 7.76 -2.39 -0.02 0.53 16 41 H 0.11 0.98 8.02 -2.38 -0.02 0.96 16 42 H 0.07 0.96 4.62 -20.61 -0.10 0.86 16 43 H 0.14 3.22 8.06 -2.91 -0.02 3.20 16 44 H 0.16 1.75 8.06 -2.91 -0.02 1.72 16 45 H 0.19 1.01 8.06 -2.91 -0.02 0.99 16 Total: -1.00 -84.49 379.53 2.28 -82.21 By element: Atomic # 1 Polarization: 32.47 SS G_CDS: -0.20 Total: 32.27 kcal Atomic # 6 Polarization: 2.47 SS G_CDS: 7.15 Total: 9.62 kcal Atomic # 7 Polarization: -127.10 SS G_CDS: -5.57 Total: -132.67 kcal Atomic # 8 Polarization: -42.67 SS G_CDS: -0.12 Total: -42.79 kcal Atomic # 14 Polarization: 46.81 SS G_CDS: 2.03 Total: 48.84 kcal Atomic # 16 Polarization: 3.54 SS G_CDS: -1.01 Total: 2.52 kcal Total: -84.49 2.28 -82.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700400166.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.297 kcal (2) G-P(sol) polarization free energy of solvation -84.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds