Wall clock time and date at job start Sat Apr 11 2020 05:40:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47090 * 2 1 4 4 N 1.46506 * 109.46719 * 119.99989 * 2 1 3 5 5 C 1.34780 * 119.99577 * 274.99382 * 4 2 1 6 6 O 1.21277 * 120.00186 * 0.02562 * 5 4 2 7 7 C 1.50699 * 119.99717 * 180.02562 * 5 4 2 8 8 N 1.46498 * 109.47183 * 180.02562 * 7 5 4 9 9 C 1.46497 * 119.99861 * 270.00043 * 8 7 5 10 10 C 1.34774 * 120.00027 * 89.99874 * 8 7 5 11 11 O 1.21700 * 120.00295 * 0.13572 * 10 8 7 12 12 C 1.46587 * 119.99717 * 180.13223 * 10 8 7 13 13 C 1.36653 * 125.45710 * 171.40021 * 12 10 8 14 14 C 1.37470 * 113.29601 * 179.97438 * 13 12 10 15 15 C 1.33810 * 115.10323 * 359.97438 * 14 13 12 16 16 S 1.70622 * 110.95575 * 359.97438 * 15 14 13 17 17 C 1.52993 * 109.47103 * 239.99397 * 2 1 3 18 18 H 1.08999 * 109.47640 * 300.00267 * 17 2 1 19 19 C 1.53008 * 109.47189 * 179.97438 * 17 2 1 20 20 N 1.46507 * 109.47159 * 60.00423 * 17 2 1 21 21 C 1.36935 * 120.00069 * 204.99985 * 20 17 2 22 22 H 1.07999 * 120.00382 * 359.97438 * 21 20 17 23 23 C 1.38812 * 119.99713 * 179.97438 * 21 20 17 24 24 N 1.31620 * 119.99980 * 179.97438 * 23 21 20 25 25 Si 1.86795 * 120.00189 * 0.02562 * 23 21 20 26 26 H 1.48498 * 109.47512 * 89.99616 * 25 23 21 27 27 H 1.48504 * 109.47365 * 209.99996 * 25 23 21 28 28 H 1.48504 * 109.47216 * 329.99911 * 25 23 21 29 29 H 1.09007 * 109.47365 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47692 * 300.00186 * 1 2 3 31 31 H 1.08995 * 109.47053 * 60.00420 * 1 2 3 32 32 H 0.96995 * 120.00326 * 95.00230 * 4 2 1 33 33 H 1.09004 * 109.47263 * 60.00604 * 7 5 4 34 34 H 1.09001 * 109.47041 * 300.00569 * 7 5 4 35 35 H 1.08996 * 109.47470 * 263.45634 * 9 8 7 36 36 H 1.09006 * 109.47528 * 23.46122 * 9 8 7 37 37 H 1.09000 * 109.47474 * 143.45659 * 9 8 7 38 38 H 1.07997 * 123.34915 * 0.27103 * 13 12 10 39 39 H 1.08002 * 122.44916 * 180.02562 * 14 13 12 40 40 H 1.08004 * 124.52467 * 179.97438 * 15 14 13 41 41 H 1.08995 * 109.46969 * 60.00181 * 19 17 2 42 42 H 1.09001 * 109.47109 * 180.02562 * 19 17 2 43 43 H 1.09003 * 109.46883 * 300.00211 * 19 17 2 44 44 H 0.97003 * 119.99602 * 24.99607 * 20 17 2 45 45 H 0.96998 * 120.00276 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0182 -0.6906 1.1962 5 6 2.1470 -0.0182 2.3572 6 8 1.8583 1.1585 2.4117 7 6 2.6498 -0.7284 3.5875 8 7 2.6985 0.2128 4.7091 9 6 3.9142 0.9906 4.9603 10 6 1.6248 0.3631 5.5097 11 8 0.6156 -0.2848 5.3025 12 6 1.6726 1.3071 6.6302 13 6 0.6082 1.6709 7.4062 14 6 0.9357 2.5740 8.3895 15 6 2.2230 2.9380 8.4200 16 16 3.1091 2.1506 7.1928 17 6 2.0399 -0.7213 -1.2491 18 1 1.6766 -1.7490 -1.2491 19 6 3.5700 -0.7208 -1.2494 20 7 1.5517 -0.0308 -2.4454 21 6 1.4209 -0.7140 -3.6249 22 1 1.6781 -1.7618 -3.6735 23 6 0.9578 -0.0597 -4.7582 24 7 0.8325 -0.7162 -5.8921 25 14 0.5136 1.7527 -4.6744 26 1 1.7107 2.5711 -4.9943 27 1 -0.5622 2.0447 -5.6556 28 1 0.0391 2.0834 -3.3067 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5137 -0.8900 32 1 2.2489 -1.6318 1.1528 33 1 3.6491 -1.1203 3.3980 34 1 1.9775 -1.5507 3.8326 35 1 4.5134 0.4923 5.7223 36 1 4.4913 1.0706 4.0390 37 1 3.6426 1.9878 5.3065 38 1 -0.3899 1.2837 7.2642 39 1 0.2075 2.9608 9.0870 40 1 2.6449 3.6369 9.1271 41 1 3.9337 -1.2343 -0.3595 42 1 3.9333 -1.2343 -2.1396 43 1 3.9330 0.3070 -1.2498 44 1 1.3210 0.9104 -2.4019 45 1 0.5085 -0.2592 -6.6839 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700400167.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:52 Heat of formation + Delta-G solvation = -9.036040 kcal Electronic energy + Delta-G solvation = -27004.448244 eV Core-core repulsion = 23149.899497 eV Total energy + Delta-G solvation = -3854.548747 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.58031 -39.36449 -37.83546 -36.89801 -35.69632 -34.03818 -31.95851 -30.98290 -29.87650 -28.91186 -28.41141 -27.02395 -24.84391 -23.90470 -22.81283 -21.44502 -20.35279 -20.01253 -19.44069 -18.41611 -17.96200 -17.31463 -16.73881 -16.20229 -15.94313 -15.56473 -15.15046 -14.92396 -14.40439 -14.07159 -13.83578 -13.74121 -13.56528 -13.47805 -13.35613 -13.09828 -12.94698 -12.92425 -12.55161 -12.51716 -12.28973 -12.04208 -11.79212 -11.36270 -11.09964 -10.96451 -10.92917 -10.78848 -10.36363 -10.31244 -10.12947 -9.95534 -9.61667 -9.29288 -9.07637 -9.04006 -8.83884 -8.77272 -7.31906 -5.79657 -3.16015 0.18372 1.13009 1.56909 2.06112 2.39027 2.65375 2.92545 3.33672 3.37531 3.41517 3.45985 4.15030 4.54335 4.57472 4.64246 4.69534 4.79449 4.93528 4.95730 5.11822 5.15214 5.16737 5.22026 5.37745 5.42066 5.59924 5.63784 5.72170 5.79783 5.91755 5.98984 5.99992 6.10373 6.24683 6.28149 6.36966 6.52973 6.68956 6.80474 6.87200 6.90902 7.57005 7.78035 7.94455 8.28117 8.38795 9.16205 9.88917 10.07788 11.38309 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.024028 B = 0.002206 C = 0.002161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.042763 B =12686.852324 C =12951.961357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.135 3.865 3 H 0.082 0.918 4 N -0.715 5.715 5 C 0.495 3.505 6 O -0.533 6.533 7 C 0.098 3.902 8 N -0.595 5.595 9 C 0.067 3.933 10 C 0.597 3.403 11 O -0.524 6.524 12 C -0.267 4.267 13 C -0.053 4.053 14 C -0.151 4.151 15 C -0.258 4.258 16 S 0.225 5.775 17 C 0.173 3.827 18 H 0.060 0.940 19 C -0.164 4.164 20 N -0.742 5.742 21 C -0.242 4.242 22 H 0.091 0.909 23 C 0.006 3.994 24 N -0.932 5.932 25 Si 0.882 3.118 26 H -0.284 1.284 27 H -0.291 1.291 28 H -0.276 1.276 29 H 0.055 0.945 30 H 0.048 0.952 31 H 0.073 0.927 32 H 0.399 0.601 33 H 0.112 0.888 34 H 0.117 0.883 35 H 0.070 0.930 36 H 0.093 0.907 37 H 0.079 0.921 38 H 0.153 0.847 39 H 0.141 0.859 40 H 0.164 0.836 41 H 0.039 0.961 42 H 0.060 0.940 43 H 0.045 0.955 44 H 0.362 0.638 45 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.518 3.064 31.088 32.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.030 3.970 3 H 0.100 0.900 4 N -0.367 5.367 5 C 0.279 3.721 6 O -0.409 6.409 7 C -0.029 4.029 8 N -0.327 5.327 9 C -0.078 4.078 10 C 0.385 3.615 11 O -0.401 6.401 12 C -0.387 4.387 13 C -0.086 4.086 14 C -0.181 4.181 15 C -0.395 4.395 16 S 0.493 5.507 17 C 0.063 3.937 18 H 0.078 0.922 19 C -0.224 4.224 20 N -0.386 5.386 21 C -0.372 4.372 22 H 0.109 0.891 23 C -0.190 4.190 24 N -0.580 5.580 25 Si 0.712 3.288 26 H -0.211 1.211 27 H -0.217 1.217 28 H -0.202 1.202 29 H 0.074 0.926 30 H 0.067 0.933 31 H 0.092 0.908 32 H 0.233 0.767 33 H 0.130 0.870 34 H 0.135 0.865 35 H 0.088 0.912 36 H 0.111 0.889 37 H 0.096 0.904 38 H 0.170 0.830 39 H 0.159 0.841 40 H 0.182 0.818 41 H 0.058 0.942 42 H 0.079 0.921 43 H 0.064 0.936 44 H 0.195 0.805 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 9.276 3.453 30.412 31.982 hybrid contribution -1.702 1.108 0.367 2.064 sum 7.574 4.561 30.780 32.024 Atomic orbital electron populations 1.22062 0.94974 1.02197 1.02040 1.21334 0.94471 0.97428 0.83794 0.89956 1.46003 1.67047 1.13998 1.09649 1.21015 0.78388 0.87924 0.84777 1.90708 1.49548 1.15999 1.84652 1.21380 1.04321 0.92562 0.84615 1.47119 1.14339 1.42592 1.28664 1.22056 0.86918 0.95778 1.03087 1.16950 0.82637 0.81253 0.80652 1.90843 1.30500 1.46516 1.72264 1.24509 0.98945 1.09587 1.05648 1.20800 0.99576 0.95394 0.92863 1.20017 0.96398 1.00577 1.01125 1.25907 1.00126 1.07584 1.05886 1.83503 1.09747 1.36254 1.21155 1.20367 0.92283 0.95911 0.85113 0.92229 1.22409 0.98530 1.01056 1.00364 1.42656 1.79787 1.09462 1.06685 1.19008 1.37262 0.95605 0.85325 0.89124 1.24652 1.01273 0.97485 0.95560 1.69693 1.52450 1.35593 1.00254 0.86593 0.78190 0.86818 0.77188 1.21084 1.21718 1.20186 0.92553 0.93252 0.90795 0.76654 0.86987 0.86487 0.91151 0.88854 0.90358 0.82976 0.84111 0.81826 0.94248 0.92133 0.93587 0.80481 0.93020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.65 9.33 37.16 0.35 -2.30 16 2 C 0.13 2.18 2.21 -67.93 -0.15 2.03 16 3 H 0.08 1.48 7.58 -51.93 -0.39 1.09 16 4 N -0.71 -9.00 4.38 -53.81 -0.24 -9.24 16 5 C 0.50 6.61 7.86 -10.98 -0.09 6.53 16 6 O -0.53 -9.41 16.09 5.56 0.09 -9.32 16 7 C 0.10 0.92 5.86 -5.20 -0.03 0.89 16 8 N -0.59 -6.19 2.36 -184.55 -0.44 -6.63 16 9 C 0.07 0.46 8.92 59.85 0.53 1.00 16 10 C 0.60 7.72 7.64 -12.89 -0.10 7.62 16 11 O -0.52 -8.52 16.43 5.19 0.09 -8.43 16 12 C -0.27 -2.85 6.23 -36.79 -0.23 -3.08 16 13 C -0.05 -0.53 10.02 -40.43 -0.41 -0.93 16 14 C -0.15 -1.17 10.15 -41.42 -0.42 -1.59 16 15 C -0.26 -1.74 10.92 29.18 0.32 -1.42 16 16 S 0.23 1.56 17.90 -107.50 -1.92 -0.37 16 17 C 0.17 3.11 2.52 -67.93 -0.17 2.94 16 18 H 0.06 1.08 8.08 -51.93 -0.42 0.66 16 19 C -0.16 -2.65 9.33 37.16 0.35 -2.30 16 20 N -0.74 -16.90 4.23 -53.42 -0.23 -17.13 16 21 C -0.24 -6.60 10.41 -15.06 -0.16 -6.76 16 22 H 0.09 2.63 8.06 -52.49 -0.42 2.21 16 23 C 0.01 0.18 5.50 -17.43 -0.10 0.09 16 24 N -0.93 -28.90 13.97 55.49 0.78 -28.12 16 25 Si 0.88 22.07 27.74 -169.99 -4.71 17.35 16 26 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 27 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 28 H -0.28 -6.54 6.52 56.52 0.37 -6.17 16 29 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 30 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.07 1.39 7.44 -51.93 -0.39 1.01 16 32 H 0.40 3.82 8.39 -40.82 -0.34 3.48 16 33 H 0.11 0.61 8.07 -51.93 -0.42 0.19 16 34 H 0.12 1.08 7.42 -51.93 -0.39 0.70 16 35 H 0.07 0.31 7.76 -51.93 -0.40 -0.09 16 36 H 0.09 0.57 8.02 -51.93 -0.42 0.15 16 37 H 0.08 0.58 4.62 -23.27 -0.11 0.47 16 38 H 0.15 1.50 8.06 -52.49 -0.42 1.08 16 39 H 0.14 0.80 8.06 -52.49 -0.42 0.38 16 40 H 0.16 0.71 8.06 -52.48 -0.42 0.28 16 41 H 0.04 0.50 7.45 -51.93 -0.39 0.11 16 42 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 43 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.36 8.32 5.44 -40.82 -0.22 8.10 16 45 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 LS Contribution 384.12 15.07 5.79 5.79 Total: -1.00 -36.61 384.12 -7.53 -44.14 By element: Atomic # 1 Polarization: 15.68 SS G_CDS: -6.43 Total: 9.25 kcal Atomic # 6 Polarization: 3.00 SS G_CDS: -0.30 Total: 2.71 kcal Atomic # 7 Polarization: -61.00 SS G_CDS: -0.12 Total: -61.12 kcal Atomic # 8 Polarization: -17.93 SS G_CDS: 0.17 Total: -17.75 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -4.71 Total: 17.35 kcal Atomic # 16 Polarization: 1.56 SS G_CDS: -1.92 Total: -0.37 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -36.61 -7.53 -44.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700400167.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.106 kcal (2) G-P(sol) polarization free energy of solvation -36.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds