Wall clock time and date at job start Sat Apr 11 2020 05:40:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.47036 * 2 1 4 4 C 1.53005 * 109.46907 * 240.00406 * 2 1 3 5 5 N 1.46502 * 109.46892 * 185.00156 * 4 2 1 6 6 C 1.34782 * 119.99588 * 179.97438 * 5 4 2 7 7 O 1.21280 * 119.99974 * 0.02562 * 6 5 4 8 8 C 1.50697 * 119.99622 * 179.97438 * 6 5 4 9 9 N 1.46504 * 109.47150 * 180.02562 * 8 6 5 10 10 C 1.46498 * 119.99960 * 270.00252 * 9 8 6 11 11 C 1.34778 * 119.99808 * 89.99590 * 9 8 6 12 12 O 1.21704 * 120.00095 * 0.12095 * 11 9 8 13 13 C 1.46583 * 119.99709 * 180.11300 * 11 9 8 14 14 C 1.36652 * 125.45522 * 171.12127 * 13 11 9 15 15 C 1.37474 * 113.29471 * 179.97438 * 14 13 11 16 16 C 1.33820 * 115.10113 * 0.02562 * 15 14 13 17 17 S 1.70621 * 110.95488 * 359.97438 * 16 15 14 18 18 N 1.46504 * 109.46861 * 120.00557 * 2 1 3 19 19 C 1.46497 * 120.00360 * 60.00240 * 18 2 1 20 20 C 1.36934 * 119.99696 * 239.99578 * 18 2 1 21 21 H 1.08012 * 120.00210 * 325.97377 * 20 18 2 22 22 C 1.38807 * 120.00108 * 145.97568 * 20 18 2 23 23 N 1.31617 * 120.00249 * 158.19679 * 22 20 18 24 24 Si 1.86804 * 119.99846 * 338.19493 * 22 20 18 25 25 H 1.48492 * 109.46979 * 90.21929 * 24 22 20 26 26 H 1.48495 * 109.47042 * 210.22031 * 24 22 20 27 27 H 1.48505 * 109.46918 * 330.21493 * 24 22 20 28 28 H 1.08994 * 109.46999 * 59.99373 * 1 2 3 29 29 H 1.08997 * 109.47036 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47002 * 299.99613 * 1 2 3 31 31 H 1.08995 * 109.47210 * 65.00129 * 4 2 1 32 32 H 1.09006 * 109.46803 * 304.99876 * 4 2 1 33 33 H 0.96991 * 119.99963 * 0.02562 * 5 4 2 34 34 H 1.09001 * 109.47194 * 59.99843 * 8 6 5 35 35 H 1.09006 * 109.47165 * 299.99820 * 8 6 5 36 36 H 1.09004 * 109.46821 * 263.87103 * 10 9 8 37 37 H 1.09002 * 109.47223 * 23.86833 * 10 9 8 38 38 H 1.08997 * 109.46851 * 143.87225 * 10 9 8 39 39 H 1.07997 * 123.35111 * 0.25699 * 14 13 11 40 40 H 1.07998 * 122.44939 * 180.02562 * 15 14 13 41 41 H 1.08002 * 124.52210 * 180.02562 * 16 15 14 42 42 H 1.08997 * 109.47234 * 84.76945 * 19 18 2 43 43 H 1.09004 * 109.47131 * 204.78048 * 19 18 2 44 44 H 1.09001 * 109.46617 * 324.77253 * 19 18 2 45 45 H 0.96999 * 119.99997 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 3.5001 -0.8264 -1.1907 6 6 4.1730 -1.4291 -2.1909 7 8 3.5698 -1.8840 -3.1397 8 6 5.6749 -1.5368 -2.1308 9 7 6.1632 -2.2275 -3.3270 10 6 6.3035 -3.6857 -3.3249 11 6 6.4832 -1.5212 -4.4294 12 8 6.3686 -0.3096 -4.4305 13 6 6.9695 -2.2125 -5.6271 14 6 7.1619 -1.6368 -6.8514 15 6 7.6266 -2.5175 -7.7992 16 6 7.8085 -3.7713 -7.3684 17 16 7.3989 -3.9151 -5.7184 18 7 2.0183 -0.6908 1.1961 19 6 1.6644 -2.0933 1.4279 20 6 2.8056 -0.0253 2.0975 21 1 3.5025 0.7255 1.7551 22 6 2.7082 -0.3158 3.4514 23 7 3.7065 -0.0285 4.2596 24 14 1.1602 -1.1143 4.1263 25 1 1.3039 -2.5914 4.0782 26 1 0.9530 -0.6825 5.5319 27 1 -0.0070 -0.7034 3.3052 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.7517 -0.1582 -2.1370 32 1 1.6053 -1.7198 -1.2953 33 1 3.9823 -0.4629 -0.4317 34 1 5.9636 -2.0991 -1.2428 35 1 6.1093 -0.5381 -2.0856 36 1 7.3342 -3.9512 -3.0897 37 1 5.6380 -4.1137 -2.5752 38 1 6.0428 -4.0772 -4.3081 39 1 6.9724 -0.5929 -7.0530 40 1 7.8299 -2.2192 -8.8171 41 1 8.1676 -4.5836 -7.9830 42 1 2.3632 -2.7373 0.8939 43 1 1.7142 -2.3091 2.4952 44 1 0.6525 -2.2771 1.0669 45 1 3.6383 -0.2311 5.2057 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700459292.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:54 Heat of formation + Delta-G solvation = 7.798247 kcal Electronic energy + Delta-G solvation = -27294.858995 eV Core-core repulsion = 23441.040238 eV Total energy + Delta-G solvation = -3853.818757 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.32902 -38.99889 -37.68576 -36.93803 -35.53753 -33.81912 -32.16981 -30.80890 -30.16328 -28.66444 -27.00296 -26.27902 -25.65395 -24.40802 -23.23546 -21.43800 -19.98884 -19.37380 -19.31566 -18.22529 -17.15796 -16.91084 -16.62402 -16.06850 -15.83908 -15.71861 -15.29146 -14.92689 -14.71902 -14.17613 -13.65489 -13.62270 -13.35654 -13.27715 -13.19868 -12.98355 -12.83394 -12.72599 -12.48866 -12.36006 -12.28617 -12.23885 -11.81988 -11.55430 -11.29543 -10.91248 -10.82965 -10.53318 -10.18310 -10.14170 -9.97477 -9.91597 -9.60506 -9.15722 -8.87540 -8.62788 -8.61682 -8.55870 -6.99484 -6.07714 -3.47766 0.30538 1.24776 1.68740 2.18530 2.60573 2.93919 3.09179 3.24279 3.42238 3.46225 3.71042 4.32241 4.44504 4.72019 4.75279 4.89856 5.00996 5.06520 5.13294 5.19404 5.21702 5.25638 5.38912 5.42256 5.44711 5.71088 5.78772 5.92010 5.95743 6.02368 6.09453 6.09772 6.14523 6.20970 6.33124 6.47079 6.65519 6.67291 6.76753 6.95696 7.08219 7.90678 7.92634 8.01455 8.23510 8.58699 8.87134 9.61598 10.00580 11.07541 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.023000 B = 0.002414 C = 0.002350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.073601 B =11596.318734 C =11913.736160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.156 3.844 3 H 0.079 0.921 4 C 0.111 3.889 5 N -0.705 5.705 6 C 0.494 3.506 7 O -0.550 6.550 8 C 0.097 3.903 9 N -0.593 5.593 10 C 0.067 3.933 11 C 0.595 3.405 12 O -0.525 6.525 13 C -0.263 4.263 14 C -0.056 4.056 15 C -0.150 4.150 16 C -0.261 4.261 17 S 0.226 5.774 18 N -0.605 5.605 19 C 0.105 3.895 20 C -0.272 4.272 21 H 0.083 0.917 22 C 0.033 3.967 23 N -0.900 5.900 24 Si 0.888 3.112 25 H -0.287 1.287 26 H -0.305 1.305 27 H -0.271 1.271 28 H 0.048 0.952 29 H 0.049 0.951 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.413 0.587 34 H 0.114 0.886 35 H 0.117 0.883 36 H 0.070 0.930 37 H 0.093 0.907 38 H 0.077 0.923 39 H 0.152 0.848 40 H 0.140 0.860 41 H 0.163 0.837 42 H 0.014 0.986 43 H 0.051 0.949 44 H 0.028 0.972 45 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.520 -9.164 -18.952 22.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.048 3.952 3 H 0.097 0.903 4 C -0.015 4.015 5 N -0.357 5.357 6 C 0.278 3.722 7 O -0.428 6.428 8 C -0.029 4.029 9 N -0.324 5.324 10 C -0.078 4.078 11 C 0.383 3.617 12 O -0.403 6.403 13 C -0.383 4.383 14 C -0.089 4.089 15 C -0.181 4.181 16 C -0.398 4.398 17 S 0.495 5.505 18 N -0.329 5.329 19 C -0.039 4.039 20 C -0.400 4.400 21 H 0.101 0.899 22 C -0.167 4.167 23 N -0.541 5.541 24 Si 0.719 3.281 25 H -0.215 1.215 26 H -0.234 1.234 27 H -0.196 1.196 28 H 0.067 0.933 29 H 0.068 0.932 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.250 0.750 34 H 0.132 0.868 35 H 0.135 0.865 36 H 0.088 0.912 37 H 0.112 0.888 38 H 0.095 0.905 39 H 0.170 0.830 40 H 0.158 0.842 41 H 0.181 0.819 42 H 0.032 0.968 43 H 0.069 0.931 44 H 0.047 0.953 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 7.132 -10.048 -18.436 22.174 hybrid contribution -0.758 0.637 -0.265 1.025 sum 6.374 -9.411 -18.700 21.884 Atomic orbital electron populations 1.22205 0.97503 1.01303 1.01174 1.20751 0.92315 0.96163 0.85931 0.90303 1.21866 0.79750 1.00853 0.98993 1.45870 1.08256 1.58357 1.23173 1.20962 0.90107 0.78393 0.82774 1.90658 1.70064 1.48588 1.33511 1.21389 0.92227 1.01289 0.87994 1.47128 1.64887 1.07328 1.13094 1.22047 1.02661 0.79704 1.03368 1.16945 0.76920 0.86448 0.81364 1.90836 1.54120 1.13079 1.82246 1.24550 1.16272 0.98375 0.99118 1.20783 0.96317 1.01432 0.90393 1.20001 1.04272 0.92500 1.01336 1.25903 1.07664 1.01899 1.04352 1.83548 1.57853 1.05499 1.03623 1.44176 1.58983 1.06607 1.23127 1.21382 0.96738 0.85919 0.99862 1.18808 1.13797 1.21176 0.86262 0.89945 1.25406 0.96941 0.98329 0.96070 1.69841 1.29755 1.49755 1.04780 0.86915 0.86121 0.77877 0.77171 1.21526 1.23350 1.19603 0.93277 0.93229 0.92121 0.92340 0.92410 0.75033 0.86779 0.86500 0.91183 0.88841 0.90518 0.83020 0.84213 0.81916 0.96752 0.93099 0.95312 0.92644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.66 9.16 37.16 0.34 -2.32 16 2 C 0.16 2.83 2.88 -67.92 -0.20 2.63 16 3 H 0.08 1.46 7.89 -51.93 -0.41 1.05 16 4 C 0.11 1.89 4.97 -4.04 -0.02 1.87 16 5 N -0.70 -11.75 5.39 -60.29 -0.32 -12.07 16 6 C 0.49 8.19 7.90 -10.98 -0.09 8.10 16 7 O -0.55 -10.82 16.43 5.56 0.09 -10.73 16 8 C 0.10 1.29 5.86 -5.19 -0.03 1.26 16 9 N -0.59 -7.69 2.36 -184.54 -0.44 -8.13 16 10 C 0.07 0.63 8.92 59.85 0.53 1.16 16 11 C 0.60 8.86 7.64 -12.89 -0.10 8.76 16 12 O -0.53 -9.55 16.43 5.18 0.09 -9.47 16 13 C -0.26 -3.18 6.23 -36.79 -0.23 -3.41 16 14 C -0.06 -0.62 10.02 -40.43 -0.41 -1.02 16 15 C -0.15 -1.31 10.15 -41.41 -0.42 -1.73 16 16 C -0.26 -2.02 10.92 29.18 0.32 -1.70 16 17 S 0.23 1.87 17.91 -107.50 -1.93 -0.06 16 18 N -0.60 -12.98 1.91 -173.48 -0.33 -13.31 16 19 C 0.11 2.18 8.52 59.85 0.51 2.69 16 20 C -0.27 -6.89 9.60 -15.06 -0.14 -7.04 16 21 H 0.08 2.20 8.06 -52.48 -0.42 1.78 16 22 C 0.03 0.90 5.31 -17.43 -0.09 0.81 16 23 N -0.90 -26.01 13.97 55.49 0.78 -25.23 16 24 Si 0.89 21.50 25.05 -169.99 -4.26 17.24 16 25 H -0.29 -6.76 6.43 56.52 0.36 -6.40 16 26 H -0.31 -7.61 7.11 56.52 0.40 -7.20 16 27 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 28 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.05 0.80 6.70 -51.93 -0.35 0.45 16 30 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 31 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.06 1.02 7.84 -51.93 -0.41 0.61 16 33 H 0.41 6.98 7.89 -40.82 -0.32 6.66 16 34 H 0.11 1.20 8.07 -51.93 -0.42 0.78 16 35 H 0.12 1.56 7.42 -51.93 -0.39 1.17 16 36 H 0.07 0.48 7.78 -51.93 -0.40 0.07 16 37 H 0.09 0.82 8.03 -51.93 -0.42 0.40 16 38 H 0.08 0.70 4.59 -23.13 -0.11 0.59 16 39 H 0.15 1.65 8.06 -52.49 -0.42 1.22 16 40 H 0.14 0.90 8.06 -52.49 -0.42 0.48 16 41 H 0.16 0.85 8.06 -52.49 -0.42 0.43 16 42 H 0.01 0.29 8.14 -51.93 -0.42 -0.14 16 43 H 0.05 1.16 2.86 -51.93 -0.15 1.01 16 44 H 0.03 0.54 6.45 -51.93 -0.33 0.20 16 45 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 376.81 15.07 5.68 5.68 Total: -1.00 -33.57 376.81 -6.92 -40.50 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: -6.26 Total: 5.53 kcal Atomic # 6 Polarization: 10.07 SS G_CDS: -0.02 Total: 10.05 kcal Atomic # 7 Polarization: -58.43 SS G_CDS: -0.32 Total: -58.74 kcal Atomic # 8 Polarization: -20.37 SS G_CDS: 0.18 Total: -20.20 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -4.26 Total: 17.24 kcal Atomic # 16 Polarization: 1.87 SS G_CDS: -1.93 Total: -0.06 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -33.57 -6.92 -40.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700459292.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.296 kcal (2) G-P(sol) polarization free energy of solvation -33.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.498 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds