Wall clock time and date at job start Sat Apr 11 2020 05:40:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.46857 * 2 1 4 4 C 1.52998 * 109.47100 * 120.00090 * 2 1 3 5 5 N 1.46501 * 109.46562 * 174.99669 * 4 2 1 6 6 C 1.34788 * 119.99736 * 179.97438 * 5 4 2 7 7 O 1.21275 * 119.99920 * 0.02562 * 6 5 4 8 8 C 1.50695 * 119.99736 * 180.02562 * 6 5 4 9 9 N 1.46500 * 109.46723 * 180.02562 * 8 6 5 10 10 C 1.46507 * 120.00142 * 90.00626 * 9 8 6 11 11 C 1.34774 * 120.00447 * 270.00300 * 9 8 6 12 12 O 1.21701 * 119.99786 * 5.39876 * 11 9 8 13 13 C 1.46580 * 120.00591 * 185.39971 * 11 9 8 14 14 C 1.36646 * 125.46360 * 188.03842 * 13 11 9 15 15 C 1.37471 * 113.30182 * 180.02562 * 14 13 11 16 16 C 1.33822 * 115.09629 * 359.97438 * 15 14 13 17 17 S 1.70617 * 110.95588 * 359.72671 * 16 15 14 18 18 N 1.46497 * 109.46885 * 240.00705 * 2 1 3 19 19 C 1.46498 * 119.99836 * 299.99649 * 18 2 1 20 20 C 1.36936 * 120.00149 * 119.99863 * 18 2 1 21 21 H 1.07996 * 120.00194 * 22.89230 * 20 18 2 22 22 C 1.38811 * 120.00169 * 202.88952 * 20 18 2 23 23 N 1.31620 * 119.99938 * 14.93879 * 22 20 18 24 24 Si 1.86793 * 120.00293 * 194.93424 * 22 20 18 25 25 H 1.48498 * 109.47139 * 60.00349 * 24 22 20 26 26 H 1.48497 * 109.47595 * 180.02562 * 24 22 20 27 27 H 1.48496 * 109.47433 * 300.00434 * 24 22 20 28 28 H 1.09007 * 109.46793 * 299.99597 * 1 2 3 29 29 H 1.09000 * 109.47536 * 59.99230 * 1 2 3 30 30 H 1.09003 * 109.46857 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46731 * 55.00636 * 4 2 1 32 32 H 1.08993 * 109.47504 * 295.00019 * 4 2 1 33 33 H 0.97003 * 120.00704 * 0.02562 * 5 4 2 34 34 H 1.08993 * 109.47464 * 300.00510 * 8 6 5 35 35 H 1.09001 * 109.46840 * 60.01169 * 8 6 5 36 36 H 1.08999 * 109.47198 * 95.91052 * 10 9 8 37 37 H 1.08998 * 109.47228 * 215.91765 * 10 9 8 38 38 H 1.09005 * 109.46291 * 335.91549 * 10 9 8 39 39 H 1.08005 * 123.35184 * 359.97438 * 14 13 11 40 40 H 1.07991 * 122.45188 * 180.02562 * 15 14 13 41 41 H 1.08002 * 124.52024 * 180.02562 * 16 15 14 42 42 H 1.09000 * 109.47351 * 95.22566 * 19 18 2 43 43 H 1.09000 * 109.47326 * 215.22732 * 19 18 2 44 44 H 1.08996 * 109.47159 * 335.22601 * 19 18 2 45 45 H 0.96994 * 120.00251 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5001 -0.8264 1.1904 6 6 4.1732 -1.4283 2.1910 7 8 3.5702 -1.8833 3.1398 8 6 5.6751 -1.5360 2.1308 9 7 6.1635 -2.2267 3.3269 10 6 6.3040 -3.6850 3.3246 11 6 6.4836 -1.5207 4.4294 12 8 6.2750 -0.3223 4.4663 13 6 7.0830 -2.1961 5.5839 14 6 7.3073 -1.6281 6.8063 15 6 7.8834 -2.4900 7.7091 16 6 8.1229 -3.7219 7.2444 17 16 7.6214 -3.8696 5.6203 18 7 2.0183 -0.6905 -1.1962 19 6 1.6644 -2.0930 -1.4282 20 6 2.8055 -0.0249 -2.0976 21 1 3.3674 0.8432 -1.7862 22 6 2.8814 -0.4660 -3.4116 23 7 1.9939 -1.3229 -3.8703 24 14 4.2428 0.1565 -4.5287 25 1 5.5619 -0.2072 -3.9516 26 1 4.1025 -0.4612 -5.8718 27 1 4.1464 1.6333 -4.6511 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.6054 -1.7198 1.2950 32 1 1.7517 -0.1584 2.1369 33 1 3.9825 -0.4622 0.4317 34 1 5.9638 -2.0989 1.2432 35 1 6.1094 -0.5372 2.0849 36 1 7.3338 -3.9505 3.0856 37 1 6.0469 -4.0763 4.3089 38 1 5.6356 -4.1131 2.5774 39 1 7.0577 -0.6035 7.0398 40 1 8.1243 -2.1949 8.7196 41 1 8.5692 -4.5179 7.8220 42 1 0.7900 -2.1446 -2.0770 43 1 2.5008 -2.6049 -1.9041 44 1 1.4390 -2.5731 -0.4759 45 1 2.0467 -1.6309 -4.7886 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700459293.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:57 Heat of formation + Delta-G solvation = -0.179642 kcal Electronic energy + Delta-G solvation = -27271.320011 eV Core-core repulsion = 23417.155306 eV Total energy + Delta-G solvation = -3854.164704 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.31353 -38.94969 -37.67779 -36.70622 -35.51385 -33.74100 -32.06864 -30.71140 -29.42695 -28.61606 -26.97719 -26.04727 -25.57149 -24.36717 -23.04691 -21.42286 -19.94768 -19.32033 -19.27320 -18.21105 -17.10067 -16.87076 -16.60822 -16.05840 -15.73758 -15.33660 -15.24040 -14.78886 -14.58724 -14.00476 -13.65873 -13.58419 -13.29833 -13.23498 -13.00218 -12.84536 -12.79724 -12.69659 -12.47540 -12.26517 -12.11895 -11.67547 -11.43968 -11.09693 -10.89764 -10.85046 -10.75638 -10.46707 -10.31413 -10.17911 -9.92084 -9.87603 -9.79697 -9.16443 -8.86619 -8.64207 -8.61264 -8.49964 -6.82670 -5.78528 -3.25620 0.29199 1.23853 1.67873 2.17395 2.61668 2.98345 3.08757 3.33351 3.39434 3.40381 3.75357 4.32560 4.42769 4.72002 4.77013 5.01094 5.05693 5.12841 5.20893 5.24259 5.34372 5.38582 5.40345 5.43185 5.60351 5.69946 5.90294 5.92656 6.08170 6.10866 6.14437 6.19957 6.32212 6.44174 6.74923 6.82777 6.88665 7.05031 7.09088 7.31430 7.68532 7.73860 7.92492 8.05184 8.32925 8.64200 9.16698 9.80263 10.30365 11.25603 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.018012 B = 0.002523 C = 0.002389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1554.165046 B =11093.155206 C =11715.810298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.157 3.843 3 H 0.068 0.932 4 C 0.109 3.891 5 N -0.703 5.703 6 C 0.493 3.507 7 O -0.549 6.549 8 C 0.098 3.902 9 N -0.593 5.593 10 C 0.066 3.934 11 C 0.594 3.406 12 O -0.524 6.524 13 C -0.263 4.263 14 C -0.056 4.056 15 C -0.150 4.150 16 C -0.258 4.258 17 S 0.225 5.775 18 N -0.593 5.593 19 C 0.164 3.836 20 C -0.263 4.263 21 H 0.069 0.931 22 C 0.006 3.994 23 N -0.902 5.902 24 Si 0.903 3.097 25 H -0.284 1.284 26 H -0.292 1.292 27 H -0.283 1.283 28 H 0.041 0.959 29 H 0.059 0.941 30 H 0.049 0.951 31 H 0.059 0.941 32 H 0.056 0.944 33 H 0.410 0.590 34 H 0.113 0.887 35 H 0.114 0.886 36 H 0.068 0.932 37 H 0.079 0.921 38 H 0.093 0.907 39 H 0.152 0.848 40 H 0.141 0.859 41 H 0.164 0.836 42 H 0.030 0.970 43 H 0.037 0.963 44 H -0.001 1.001 45 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.795 -6.628 17.858 22.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.049 3.951 3 H 0.087 0.913 4 C -0.017 4.017 5 N -0.355 5.355 6 C 0.277 3.723 7 O -0.427 6.427 8 C -0.028 4.028 9 N -0.325 5.325 10 C -0.079 4.079 11 C 0.383 3.617 12 O -0.402 6.402 13 C -0.383 4.383 14 C -0.090 4.090 15 C -0.181 4.181 16 C -0.395 4.395 17 S 0.493 5.507 18 N -0.316 5.316 19 C 0.019 3.981 20 C -0.392 4.392 21 H 0.086 0.914 22 C -0.194 4.194 23 N -0.546 5.546 24 Si 0.733 3.267 25 H -0.211 1.211 26 H -0.218 1.218 27 H -0.210 1.210 28 H 0.060 0.940 29 H 0.078 0.922 30 H 0.068 0.932 31 H 0.078 0.922 32 H 0.074 0.926 33 H 0.247 0.753 34 H 0.131 0.869 35 H 0.132 0.868 36 H 0.086 0.914 37 H 0.097 0.903 38 H 0.112 0.888 39 H 0.170 0.830 40 H 0.158 0.842 41 H 0.181 0.819 42 H 0.048 0.952 43 H 0.056 0.944 44 H 0.018 0.982 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 11.272 -7.611 17.325 22.026 hybrid contribution 0.783 1.405 0.059 1.610 sum 12.056 -6.206 17.384 22.047 Atomic orbital electron populations 1.22187 0.97508 1.01315 1.00585 1.20628 0.92566 0.95569 0.86387 0.91331 1.21917 0.79508 1.01109 0.99142 1.45856 1.08382 1.58295 1.22967 1.20931 0.90025 0.78513 0.82847 1.90657 1.70019 1.48506 1.33509 1.21384 0.92452 1.00995 0.87980 1.47126 1.64919 1.07347 1.13105 1.22011 1.02432 0.79639 1.03801 1.16939 0.77475 0.86260 0.81076 1.90836 1.54285 1.14177 1.80856 1.24563 1.14922 0.99066 0.99741 1.20789 0.96265 1.01299 0.90618 1.20006 1.03519 0.93003 1.01598 1.25829 1.07645 1.02140 1.03935 1.83524 1.53280 1.07507 1.06381 1.43979 1.58255 1.07935 1.21412 1.20709 0.99691 0.83428 0.94223 1.19148 1.18987 1.11711 0.89385 0.91370 1.25019 0.98167 0.99658 0.96515 1.70067 1.33934 1.35253 1.15324 0.86377 0.81993 0.78381 0.79988 1.21051 1.21758 1.20975 0.93999 0.92191 0.93220 0.92241 0.92602 0.75346 0.86893 0.86772 0.91356 0.90349 0.88830 0.83011 0.84167 0.81853 0.95195 0.94411 0.98210 0.93677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.79 9.19 37.16 0.34 -2.45 16 2 C 0.16 3.02 2.87 -67.93 -0.19 2.82 16 3 H 0.07 1.32 7.86 -51.93 -0.41 0.91 16 4 C 0.11 1.96 4.94 -4.04 -0.02 1.94 16 5 N -0.70 -12.02 5.39 -60.30 -0.32 -12.35 16 6 C 0.49 8.34 7.90 -10.98 -0.09 8.25 16 7 O -0.55 -11.08 16.43 5.56 0.09 -10.99 16 8 C 0.10 1.30 5.82 -5.20 -0.03 1.27 16 9 N -0.59 -7.70 2.36 -184.55 -0.44 -8.14 16 10 C 0.07 0.62 8.83 59.85 0.53 1.15 16 11 C 0.59 8.82 7.62 -12.90 -0.10 8.72 16 12 O -0.52 -9.53 16.49 5.19 0.09 -9.45 16 13 C -0.26 -3.14 6.20 -36.79 -0.23 -3.37 16 14 C -0.06 -0.61 10.02 -40.44 -0.41 -1.02 16 15 C -0.15 -1.29 10.15 -41.41 -0.42 -1.71 16 16 C -0.26 -1.96 10.92 29.18 0.32 -1.64 16 17 S 0.22 1.83 17.91 -107.50 -1.93 -0.10 16 18 N -0.59 -13.52 2.28 -173.49 -0.40 -13.91 16 19 C 0.16 3.82 8.02 59.85 0.48 4.30 16 20 C -0.26 -6.58 9.31 -15.06 -0.14 -6.72 16 21 H 0.07 1.64 7.83 -52.49 -0.41 1.23 16 22 C 0.01 0.15 5.06 -17.43 -0.09 0.06 16 23 N -0.90 -25.12 10.81 55.49 0.60 -24.52 16 24 Si 0.90 20.64 29.58 -169.99 -5.03 15.61 16 25 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 26 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 27 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 28 H 0.04 0.63 8.14 -51.92 -0.42 0.21 16 29 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 30 H 0.05 0.89 7.67 -51.93 -0.40 0.49 16 31 H 0.06 1.13 6.86 -51.93 -0.36 0.78 16 32 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.41 6.93 7.89 -40.82 -0.32 6.61 16 34 H 0.11 1.17 8.07 -51.93 -0.42 0.75 16 35 H 0.11 1.48 7.50 -51.93 -0.39 1.09 16 36 H 0.07 0.47 7.51 -51.93 -0.39 0.08 16 37 H 0.08 0.72 5.10 -27.37 -0.14 0.58 16 38 H 0.09 0.84 8.03 -51.93 -0.42 0.42 16 39 H 0.15 1.63 8.06 -52.48 -0.42 1.21 16 40 H 0.14 0.89 8.06 -52.49 -0.42 0.46 16 41 H 0.16 0.83 8.06 -52.49 -0.42 0.41 16 42 H 0.03 0.77 7.33 -51.93 -0.38 0.39 16 43 H 0.04 0.94 7.39 -51.93 -0.38 0.56 16 44 H 0.00 -0.01 6.53 -51.93 -0.34 -0.35 16 45 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 LS Contribution 381.91 15.07 5.76 5.76 Total: -1.00 -33.18 381.91 -8.05 -41.23 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: -6.43 Total: 5.26 kcal Atomic # 6 Polarization: 11.65 SS G_CDS: -0.04 Total: 11.61 kcal Atomic # 7 Polarization: -58.36 SS G_CDS: -0.56 Total: -58.91 kcal Atomic # 8 Polarization: -20.62 SS G_CDS: 0.18 Total: -20.44 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.03 Total: 15.61 kcal Atomic # 16 Polarization: 1.83 SS G_CDS: -1.93 Total: -0.10 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -33.18 -8.05 -41.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700459293.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.045 kcal (2) G-P(sol) polarization free energy of solvation -33.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds