Wall clock time and date at job start Sat Apr 11 2020 05:40:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.46857 * 2 1 4 4 C 1.52998 * 109.47100 * 120.00090 * 2 1 3 5 5 N 1.46501 * 109.46562 * 174.99669 * 4 2 1 6 6 C 1.34788 * 119.99736 * 179.97438 * 5 4 2 7 7 O 1.21275 * 119.99920 * 0.02562 * 6 5 4 8 8 C 1.50695 * 119.99736 * 180.02562 * 6 5 4 9 9 N 1.46500 * 109.46723 * 180.02562 * 8 6 5 10 10 C 1.46507 * 120.00142 * 90.00626 * 9 8 6 11 11 C 1.34774 * 120.00447 * 270.00300 * 9 8 6 12 12 O 1.21701 * 119.99786 * 5.39876 * 11 9 8 13 13 C 1.46580 * 120.00591 * 185.39971 * 11 9 8 14 14 C 1.36646 * 125.46360 * 188.03842 * 13 11 9 15 15 C 1.37471 * 113.30182 * 180.02562 * 14 13 11 16 16 C 1.33822 * 115.09629 * 359.97438 * 15 14 13 17 17 S 1.70617 * 110.95588 * 359.72671 * 16 15 14 18 18 N 1.46497 * 109.46885 * 240.00705 * 2 1 3 19 19 C 1.46498 * 119.99836 * 299.99649 * 18 2 1 20 20 C 1.36936 * 120.00149 * 119.99863 * 18 2 1 21 21 H 1.07996 * 120.00194 * 22.89230 * 20 18 2 22 22 C 1.38811 * 120.00169 * 202.88952 * 20 18 2 23 23 N 1.31620 * 119.99938 * 14.93879 * 22 20 18 24 24 Si 1.86793 * 120.00293 * 194.93424 * 22 20 18 25 25 H 1.48498 * 109.47139 * 60.00349 * 24 22 20 26 26 H 1.48497 * 109.47595 * 180.02562 * 24 22 20 27 27 H 1.48496 * 109.47433 * 300.00434 * 24 22 20 28 28 H 1.09007 * 109.46793 * 299.99597 * 1 2 3 29 29 H 1.09000 * 109.47536 * 59.99230 * 1 2 3 30 30 H 1.09003 * 109.46857 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46731 * 55.00636 * 4 2 1 32 32 H 1.08993 * 109.47504 * 295.00019 * 4 2 1 33 33 H 0.97003 * 120.00704 * 0.02562 * 5 4 2 34 34 H 1.08993 * 109.47464 * 300.00510 * 8 6 5 35 35 H 1.09001 * 109.46840 * 60.01169 * 8 6 5 36 36 H 1.08999 * 109.47198 * 95.91052 * 10 9 8 37 37 H 1.08998 * 109.47228 * 215.91765 * 10 9 8 38 38 H 1.09005 * 109.46291 * 335.91549 * 10 9 8 39 39 H 1.08005 * 123.35184 * 359.97438 * 14 13 11 40 40 H 1.07991 * 122.45188 * 180.02562 * 15 14 13 41 41 H 1.08002 * 124.52024 * 180.02562 * 16 15 14 42 42 H 1.09000 * 109.47351 * 95.22566 * 19 18 2 43 43 H 1.09000 * 109.47326 * 215.22732 * 19 18 2 44 44 H 1.08996 * 109.47159 * 335.22601 * 19 18 2 45 45 H 0.96994 * 120.00251 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5001 -0.8264 1.1904 6 6 4.1732 -1.4283 2.1910 7 8 3.5702 -1.8833 3.1398 8 6 5.6751 -1.5360 2.1308 9 7 6.1635 -2.2267 3.3269 10 6 6.3040 -3.6850 3.3246 11 6 6.4836 -1.5207 4.4294 12 8 6.2750 -0.3223 4.4663 13 6 7.0830 -2.1961 5.5839 14 6 7.3073 -1.6281 6.8063 15 6 7.8834 -2.4900 7.7091 16 6 8.1229 -3.7219 7.2444 17 16 7.6214 -3.8696 5.6203 18 7 2.0183 -0.6905 -1.1962 19 6 1.6644 -2.0930 -1.4282 20 6 2.8055 -0.0249 -2.0976 21 1 3.3674 0.8432 -1.7862 22 6 2.8814 -0.4660 -3.4116 23 7 1.9939 -1.3229 -3.8703 24 14 4.2428 0.1565 -4.5287 25 1 5.5619 -0.2072 -3.9516 26 1 4.1025 -0.4612 -5.8718 27 1 4.1464 1.6333 -4.6511 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.6054 -1.7198 1.2950 32 1 1.7517 -0.1584 2.1369 33 1 3.9825 -0.4622 0.4317 34 1 5.9638 -2.0989 1.2432 35 1 6.1094 -0.5372 2.0849 36 1 7.3338 -3.9505 3.0856 37 1 6.0469 -4.0763 4.3089 38 1 5.6356 -4.1131 2.5774 39 1 7.0577 -0.6035 7.0398 40 1 8.1243 -2.1949 8.7196 41 1 8.5692 -4.5179 7.8220 42 1 0.7900 -2.1446 -2.0770 43 1 2.5008 -2.6049 -1.9041 44 1 1.4390 -2.5731 -0.4759 45 1 2.0467 -1.6309 -4.7886 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700459293.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:56 Heat of formation + Delta-G solvation = -21.775158 kcal Electronic energy + Delta-G solvation = -27272.256463 eV Core-core repulsion = 23417.155306 eV Total energy + Delta-G solvation = -3855.101156 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.43525 -40.22923 -38.55781 -38.23838 -36.60656 -35.37328 -33.75854 -31.70999 -31.09298 -29.59407 -27.98777 -27.89761 -26.80998 -25.30979 -24.82713 -22.40213 -21.28080 -20.82215 -20.07604 -19.13779 -18.84446 -18.26946 -17.68366 -17.14102 -16.91545 -16.75209 -16.31296 -16.12427 -15.85273 -15.61164 -14.96504 -14.61360 -14.51861 -14.42980 -14.15529 -14.03147 -13.94313 -13.71250 -13.63950 -13.52901 -13.16772 -13.04893 -12.87992 -12.82464 -12.61370 -12.48086 -12.30412 -12.10443 -11.77084 -11.55598 -11.51355 -11.28695 -11.18714 -10.58307 -10.06002 -9.95223 -9.71673 -9.36925 -8.75499 -7.76811 -5.24973 -0.47794 0.52324 1.02177 1.37783 1.53525 1.54052 1.60257 1.65286 1.67020 2.12887 2.47213 2.56207 3.37412 3.46873 3.64330 3.85324 4.00866 4.06111 4.13590 4.19339 4.31317 4.36032 4.37815 4.49852 4.56372 4.59816 4.70931 4.71557 4.75596 4.92434 5.02204 5.03813 5.16485 5.22881 5.26591 5.35849 5.38356 5.41227 5.59685 5.71689 5.75963 6.12322 6.37354 6.63797 6.92256 7.19432 7.28761 7.90880 8.37122 9.26218 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.018012 B = 0.002523 C = 0.002389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1554.165046 B =11093.155206 C =11715.810298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.157 3.843 3 H 0.071 0.929 4 C 0.120 3.880 5 N -0.703 5.703 6 C 0.491 3.509 7 O -0.584 6.584 8 C 0.101 3.899 9 N -0.594 5.594 10 C 0.058 3.942 11 C 0.585 3.415 12 O -0.575 6.575 13 C -0.309 4.309 14 C -0.064 4.064 15 C -0.163 4.163 16 C -0.247 4.247 17 S 0.280 5.720 18 N -0.600 5.600 19 C 0.184 3.816 20 C -0.258 4.258 21 H 0.079 0.921 22 C -0.050 4.050 23 N -0.937 5.937 24 Si 0.964 3.036 25 H -0.272 1.272 26 H -0.304 1.304 27 H -0.281 1.281 28 H 0.072 0.928 29 H 0.041 0.959 30 H 0.044 0.956 31 H 0.049 0.951 32 H 0.062 0.938 33 H 0.412 0.588 34 H 0.147 0.853 35 H 0.115 0.885 36 H 0.099 0.901 37 H 0.080 0.920 38 H 0.099 0.901 39 H 0.140 0.860 40 H 0.162 0.838 41 H 0.196 0.804 42 H 0.001 0.999 43 H 0.015 0.985 44 H 0.020 0.980 45 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.652 -7.704 19.205 24.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.050 3.950 3 H 0.090 0.910 4 C -0.006 4.006 5 N -0.355 5.355 6 C 0.277 3.723 7 O -0.465 6.465 8 C -0.026 4.026 9 N -0.325 5.325 10 C -0.086 4.086 11 C 0.375 3.625 12 O -0.457 6.457 13 C -0.428 4.428 14 C -0.099 4.099 15 C -0.193 4.193 16 C -0.384 4.384 17 S 0.548 5.452 18 N -0.324 5.324 19 C 0.039 3.961 20 C -0.388 4.388 21 H 0.097 0.903 22 C -0.245 4.245 23 N -0.583 5.583 24 Si 0.793 3.207 25 H -0.198 1.198 26 H -0.231 1.231 27 H -0.207 1.207 28 H 0.091 0.909 29 H 0.061 0.939 30 H 0.064 0.936 31 H 0.067 0.933 32 H 0.081 0.919 33 H 0.249 0.751 34 H 0.164 0.836 35 H 0.133 0.867 36 H 0.117 0.883 37 H 0.098 0.902 38 H 0.117 0.883 39 H 0.157 0.843 40 H 0.179 0.821 41 H 0.213 0.787 42 H 0.019 0.981 43 H 0.034 0.966 44 H 0.039 0.961 45 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 13.146 -8.702 18.686 24.448 hybrid contribution 0.196 1.699 -0.243 1.727 sum 13.342 -7.003 18.442 23.815 Atomic orbital electron populations 1.22078 0.96269 1.01265 1.01229 1.20752 0.93467 0.95453 0.85328 0.91044 1.21700 0.80154 1.00278 0.98445 1.45874 1.08057 1.58329 1.23195 1.21577 0.91506 0.77332 0.81877 1.90635 1.71120 1.49994 1.34717 1.21459 0.89580 1.02006 0.89507 1.47296 1.63921 1.08732 1.12517 1.22289 1.04515 0.77484 1.04267 1.17450 0.77057 0.85974 0.82015 1.90784 1.56659 1.16296 1.81956 1.24518 1.17242 1.01902 0.99181 1.20953 0.96379 1.01397 0.91138 1.20156 1.03814 0.93050 1.02271 1.26291 1.05771 1.02436 1.03916 1.83180 1.51683 1.03881 1.06420 1.44111 1.58368 1.07905 1.21978 1.20378 0.97467 0.83970 0.94306 1.19516 1.18468 1.11297 0.89520 0.90341 1.25723 1.00224 1.00496 0.98063 1.70238 1.35788 1.37173 1.15140 0.85398 0.80045 0.77654 0.77628 1.19756 1.23078 1.20671 0.90882 0.93949 0.93640 0.93295 0.91944 0.75107 0.83587 0.86719 0.88320 0.90183 0.88280 0.84263 0.82073 0.78655 0.98094 0.96600 0.96145 0.94544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.15 9.19 71.98 0.66 -4.49 16 2 C 0.16 5.88 2.87 44.99 0.13 6.01 16 3 H 0.07 2.65 7.86 -2.39 -0.02 2.63 16 4 C 0.12 4.19 4.94 86.38 0.43 4.62 16 5 N -0.70 -23.44 5.39 -463.06 -2.49 -25.94 16 6 C 0.49 16.35 7.90 87.65 0.69 17.04 16 7 O -0.58 -23.53 16.43 -3.02 -0.05 -23.58 16 8 C 0.10 2.56 5.82 85.63 0.50 3.06 16 9 N -0.59 -14.93 2.36 -856.00 -2.02 -16.95 16 10 C 0.06 0.97 8.83 127.77 1.13 2.09 16 11 C 0.58 17.54 7.62 86.42 0.66 18.20 16 12 O -0.58 -21.83 16.49 -4.35 -0.07 -21.90 16 13 C -0.31 -7.24 6.20 24.08 0.15 -7.09 16 14 C -0.06 -1.39 10.02 21.72 0.22 -1.17 16 15 C -0.16 -2.46 10.15 21.08 0.21 -2.25 16 16 C -0.25 -2.92 10.92 66.82 0.73 -2.19 16 17 S 0.28 3.80 17.91 -56.49 -1.01 2.79 16 18 N -0.60 -27.14 2.28 -702.80 -1.60 -28.75 16 19 C 0.18 8.63 8.02 127.77 1.02 9.66 16 20 C -0.26 -12.74 9.31 84.03 0.78 -11.96 16 21 H 0.08 3.67 7.83 -2.91 -0.02 3.64 16 22 C -0.05 -2.60 5.06 84.86 0.43 -2.17 16 23 N -0.94 -53.10 10.81 21.65 0.23 -52.86 16 24 Si 0.96 42.34 29.58 68.60 2.03 44.37 16 25 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 26 H -0.30 -13.88 7.11 99.48 0.71 -13.17 16 27 H -0.28 -12.08 7.11 99.48 0.71 -11.38 16 28 H 0.07 2.07 8.14 -2.38 -0.02 2.05 16 29 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 30 H 0.04 1.60 7.67 -2.39 -0.02 1.58 16 31 H 0.05 1.82 6.86 -2.39 -0.02 1.80 16 32 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 33 H 0.41 13.47 7.89 -92.71 -0.73 12.74 16 34 H 0.15 2.69 8.07 -2.39 -0.02 2.67 16 35 H 0.11 2.94 7.50 -2.39 -0.02 2.92 16 36 H 0.10 1.05 7.51 -2.39 -0.02 1.03 16 37 H 0.08 1.31 5.10 -18.01 -0.09 1.22 16 38 H 0.10 1.57 8.03 -2.38 -0.02 1.55 16 39 H 0.14 3.21 8.06 -2.91 -0.02 3.18 16 40 H 0.16 1.65 8.06 -2.92 -0.02 1.63 16 41 H 0.20 1.04 8.06 -2.91 -0.02 1.01 16 42 H 0.00 0.04 7.33 -2.39 -0.02 0.02 16 43 H 0.02 0.78 7.39 -2.39 -0.02 0.76 16 44 H 0.02 0.85 6.53 -2.39 -0.02 0.83 16 45 H 0.25 13.73 8.31 -92.71 -0.77 12.96 16 Total: -1.00 -73.60 381.91 2.95 -70.66 By element: Atomic # 1 Polarization: 22.60 SS G_CDS: 0.20 Total: 22.79 kcal Atomic # 6 Polarization: 21.63 SS G_CDS: 7.74 Total: 29.38 kcal Atomic # 7 Polarization: -118.61 SS G_CDS: -5.89 Total: -124.50 kcal Atomic # 8 Polarization: -45.36 SS G_CDS: -0.12 Total: -45.49 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 2.03 Total: 44.37 kcal Atomic # 16 Polarization: 3.80 SS G_CDS: -1.01 Total: 2.79 kcal Total: -73.60 2.95 -70.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700459293.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.881 kcal (2) G-P(sol) polarization free energy of solvation -73.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds