Wall clock time and date at job start Sat Apr 11 2020 05:40:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.47192 * 2 1 4 4 N 1.46492 * 109.47355 * 120.00532 * 2 1 3 5 5 C 1.34777 * 119.99944 * 275.00076 * 4 2 1 6 6 O 1.21281 * 119.99723 * 359.97438 * 5 4 2 7 7 C 1.50701 * 119.99986 * 180.02562 * 5 4 2 8 8 S 1.81009 * 109.47038 * 179.97438 * 7 5 4 9 9 C 1.76197 * 99.99867 * 179.97438 * 8 7 5 10 10 H 1.08000 * 120.00424 * 0.02562 * 9 8 7 11 11 C 1.38800 * 119.99997 * 179.97438 * 9 8 7 12 12 N 1.31633 * 119.99868 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 120.00171 * 179.97438 * 11 9 8 14 14 H 1.48506 * 109.46796 * 60.00813 * 13 11 9 15 15 H 1.48499 * 109.46854 * 180.02562 * 13 11 9 16 16 H 1.48499 * 109.47028 * 300.00611 * 13 11 9 17 17 C 1.53004 * 109.46801 * 240.00333 * 2 1 3 18 18 H 1.08999 * 109.47069 * 174.99892 * 17 2 1 19 19 C 1.52999 * 109.47079 * 295.00041 * 17 2 1 20 20 N 1.46501 * 109.47293 * 55.00028 * 17 2 1 21 21 C 1.34776 * 120.00033 * 155.00114 * 20 17 2 22 22 O 1.21273 * 120.00255 * 359.97438 * 21 20 17 23 23 C 1.50706 * 119.99892 * 180.02562 * 21 20 17 24 24 C 1.50690 * 109.47163 * 179.97438 * 23 21 20 25 25 C 1.34858 * 125.89120 * 275.04075 * 24 23 21 26 26 C 1.40900 * 107.41627 * 179.73386 * 25 24 23 27 27 C 1.34850 * 107.41621 * 0.37840 * 26 25 24 28 28 N 1.36341 * 125.89174 * 94.99728 * 24 23 21 29 29 H 0.97003 * 125.63345 * 0.05952 * 28 24 23 30 30 H 1.09002 * 109.47577 * 59.99769 * 1 2 3 31 31 H 1.08997 * 109.47192 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47138 * 299.99450 * 1 2 3 33 33 H 0.97000 * 120.00089 * 94.99909 * 4 2 1 34 34 H 1.09000 * 109.46947 * 299.99014 * 7 5 4 35 35 H 1.08996 * 109.47460 * 59.99697 * 7 5 4 36 36 H 0.96999 * 120.00160 * 179.97438 * 12 11 9 37 37 H 1.08997 * 109.47356 * 299.99878 * 19 17 2 38 38 H 1.08999 * 109.47292 * 59.99988 * 19 17 2 39 39 H 1.09000 * 109.46751 * 180.02562 * 19 17 2 40 40 H 0.97003 * 119.99517 * 334.99723 * 20 17 2 41 41 H 1.09003 * 109.46730 * 59.99765 * 23 21 20 42 42 H 1.09000 * 109.46614 * 299.99801 * 23 21 20 43 43 H 1.07991 * 126.29006 * 359.97438 * 25 24 23 44 44 H 1.07999 * 126.29093 * 180.24309 * 26 25 24 45 45 H 1.08002 * 125.89234 * 179.89015 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6907 1.1960 5 6 2.1471 -0.0184 2.3570 6 8 1.8590 1.1584 2.4114 7 6 2.6500 -0.7288 3.5873 8 16 2.7115 0.4344 4.9729 9 6 3.3145 -0.6310 6.2401 10 1 3.5239 -1.6674 6.0201 11 6 3.5215 -0.1380 7.5210 12 7 3.2667 1.1253 7.7891 13 14 4.1601 -1.2676 8.8647 14 1 5.4862 -1.8067 8.4693 15 1 4.2934 -0.5040 10.1313 16 1 3.2081 -2.3901 9.0617 17 6 2.0399 -0.7212 -1.2493 18 1 3.1262 -0.6443 -1.2953 19 6 1.6351 -2.1954 -1.1881 20 7 1.4557 -0.1035 -2.4424 21 6 2.0911 -0.1937 -3.6276 22 8 3.1466 -0.7856 -3.7064 23 6 1.4904 0.4422 -4.8548 24 6 2.3908 0.1990 -6.0384 25 6 3.4583 0.9459 -6.3864 26 6 4.0172 0.3691 -7.5441 27 6 3.2649 -0.7033 -7.8643 28 7 2.2671 -0.8147 -6.9418 29 1 1.5821 -1.5015 -6.9303 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5137 0.8900 33 1 2.2490 -1.6318 1.1524 34 1 1.9777 -1.5510 3.8324 35 1 3.6493 -1.1206 3.3977 36 1 3.4110 1.4697 8.6843 37 1 2.0697 -2.6550 -0.3005 38 1 0.5488 -2.2723 -1.1422 39 1 1.9988 -2.7092 -2.0780 40 1 0.6116 0.3702 -2.3793 41 1 1.3849 1.5151 -4.6934 42 1 0.5104 0.0056 -5.0475 43 1 3.8207 1.8224 -5.8702 44 1 4.8868 0.7224 -8.0783 45 1 3.4276 -1.3630 -8.7038 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001701114954.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:59 Heat of formation + Delta-G solvation = -31.108425 kcal Electronic energy + Delta-G solvation = -25898.801509 eV Core-core repulsion = 22043.295632 eV Total energy + Delta-G solvation = -3855.505877 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.45974 -40.27467 -39.23618 -36.98014 -34.07242 -32.51207 -32.43381 -31.17173 -31.12428 -29.74130 -28.51729 -26.88585 -25.51016 -24.82577 -21.85591 -20.85852 -20.60002 -20.35399 -19.97353 -18.25098 -17.76065 -17.52475 -16.58188 -16.18427 -15.76153 -15.47992 -15.02731 -14.80892 -14.70796 -14.48749 -14.03596 -13.95365 -13.76405 -13.66383 -13.37492 -13.22018 -13.07076 -12.64346 -12.56381 -12.51133 -12.45166 -12.07543 -11.97146 -11.92911 -11.24690 -11.10310 -11.05078 -11.04170 -10.77552 -10.20755 -9.83752 -9.49218 -9.40770 -9.07831 -9.07482 -8.99899 -8.30261 -8.25800 -6.51229 -6.22366 -3.93175 1.89355 2.31392 2.61256 2.86914 3.01600 3.03919 3.16069 3.23209 3.27733 3.33110 3.71253 4.19757 4.26196 4.32607 4.58547 4.62164 4.66860 4.88175 4.92709 5.00115 5.07630 5.12703 5.14050 5.17565 5.27148 5.38058 5.45164 5.47295 5.60500 5.65183 5.76019 5.86505 5.90188 5.98415 6.07561 6.11023 6.12292 6.14805 6.56703 6.72684 6.86501 7.11482 7.30939 7.58483 7.63235 7.90523 8.34230 8.55513 9.22909 10.84982 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.029049 B = 0.001683 C = 0.001668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.652945 B =16629.444860 C =16787.034815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.138 3.862 3 H 0.094 0.906 4 N -0.732 5.732 5 C 0.535 3.465 6 O -0.515 6.515 7 C -0.154 4.154 8 S -0.059 6.059 9 C -0.537 4.537 10 H 0.072 0.928 11 C 0.074 3.926 12 N -0.868 5.868 13 Si 0.919 3.081 14 H -0.274 1.274 15 H -0.283 1.283 16 H -0.274 1.274 17 C 0.136 3.864 18 H 0.095 0.905 19 C -0.167 4.167 20 N -0.724 5.724 21 C 0.512 3.488 22 O -0.523 6.523 23 C -0.071 4.071 24 C 0.028 3.972 25 C -0.178 4.178 26 C -0.200 4.200 27 C -0.012 4.012 28 N -0.554 5.554 29 H 0.411 0.589 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.071 0.929 33 H 0.398 0.602 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.269 0.731 37 H 0.067 0.933 38 H 0.064 0.936 39 H 0.063 0.937 40 H 0.401 0.599 41 H 0.116 0.884 42 H 0.098 0.902 43 H 0.133 0.867 44 H 0.134 0.866 45 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.155 -5.580 -30.026 31.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.032 3.968 3 H 0.112 0.888 4 N -0.389 5.389 5 C 0.321 3.679 6 O -0.389 6.389 7 C -0.305 4.305 8 S 0.168 5.832 9 C -0.685 4.685 10 H 0.090 0.910 11 C -0.135 4.135 12 N -0.503 5.503 13 Si 0.745 3.255 14 H -0.199 1.199 15 H -0.208 1.208 16 H -0.200 1.200 17 C 0.031 3.969 18 H 0.113 0.887 19 C -0.225 4.225 20 N -0.379 5.379 21 C 0.297 3.703 22 O -0.397 6.397 23 C -0.112 4.112 24 C -0.084 4.084 25 C -0.203 4.203 26 C -0.225 4.225 27 C -0.143 4.143 28 N -0.148 5.148 29 H 0.246 0.754 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.090 0.910 33 H 0.234 0.766 34 H 0.108 0.892 35 H 0.109 0.891 36 H 0.079 0.921 37 H 0.086 0.914 38 H 0.083 0.917 39 H 0.082 0.918 40 H 0.237 0.763 41 H 0.134 0.866 42 H 0.116 0.884 43 H 0.151 0.849 44 H 0.152 0.848 45 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -6.960 -3.992 -29.844 30.904 hybrid contribution 0.170 -2.677 0.829 2.808 sum -6.790 -6.670 -29.015 30.536 Atomic orbital electron populations 1.22265 0.95251 1.02468 1.02607 1.20967 0.94379 0.97798 0.83687 0.88765 1.46084 1.69620 1.14026 1.09141 1.20329 0.76676 0.87207 0.83689 1.90701 1.48144 1.15691 1.84366 1.23541 1.03739 1.04913 0.98297 1.85383 1.86311 1.12822 0.98705 1.22830 1.51144 0.98140 0.96396 0.90961 1.24987 0.95061 0.95537 0.97941 1.70005 1.45442 1.13209 1.21626 0.86226 0.79329 0.80009 0.79950 1.19927 1.20797 1.19951 1.21098 0.99664 0.92528 0.83601 0.88660 1.22237 1.02133 0.95489 1.02627 1.46085 1.26191 1.57643 1.07980 1.20590 0.85075 0.80313 0.84297 1.90761 1.21913 1.41767 1.85293 1.20117 0.98105 1.03604 0.89379 1.19455 1.01258 0.93265 0.94452 1.20662 0.97413 1.02640 0.99577 1.20891 1.02587 0.98840 1.00168 1.21786 0.92773 1.02390 0.97383 1.41860 1.25894 1.24334 1.22752 0.75365 0.92217 0.91899 0.91017 0.76581 0.89172 0.89138 0.92117 0.91411 0.91736 0.91836 0.76274 0.86561 0.88367 0.84928 0.84793 0.82019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.50 9.00 37.16 0.33 -1.16 16 2 C 0.14 1.45 2.62 -67.93 -0.18 1.27 16 3 H 0.09 1.20 7.58 -51.93 -0.39 0.80 16 4 N -0.73 -9.16 4.99 -53.81 -0.27 -9.42 16 5 C 0.53 9.55 7.81 -10.99 -0.09 9.47 16 6 O -0.52 -11.20 15.52 5.56 0.09 -11.11 16 7 C -0.15 -3.04 6.16 36.01 0.22 -2.82 16 8 S -0.06 -1.58 20.57 -107.50 -2.21 -3.79 16 9 C -0.54 -15.20 9.50 30.94 0.29 -14.91 16 10 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 11 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 12 N -0.87 -26.05 13.22 55.49 0.73 -25.31 16 13 Si 0.92 21.33 29.55 -169.99 -5.02 16.31 16 14 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 15 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 16 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 17 C 0.14 1.23 2.62 -67.93 -0.18 1.05 16 18 H 0.10 1.08 7.58 -51.93 -0.39 0.69 16 19 C -0.17 -1.31 9.00 37.16 0.33 -0.97 16 20 N -0.72 -5.19 4.99 -53.80 -0.27 -5.46 16 21 C 0.51 4.55 7.79 -10.98 -0.09 4.46 16 22 O -0.52 -7.06 15.70 5.56 0.09 -6.97 16 23 C -0.07 -0.41 6.24 -29.04 -0.18 -0.60 16 24 C 0.03 0.24 5.66 -81.79 -0.46 -0.22 16 25 C -0.18 -1.77 10.77 -39.77 -0.43 -2.20 16 26 C -0.20 -1.85 10.86 -39.78 -0.43 -2.28 16 27 C -0.01 -0.09 11.94 -16.75 -0.20 -0.29 16 28 N -0.55 -3.98 6.07 -9.12 -0.06 -4.03 16 29 H 0.41 1.79 8.96 -40.82 -0.37 1.43 16 30 H 0.06 0.36 6.29 -51.93 -0.33 0.04 16 31 H 0.06 0.50 6.56 -51.93 -0.34 0.16 16 32 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 33 H 0.40 3.98 6.58 -40.82 -0.27 3.71 16 34 H 0.09 1.63 8.14 -51.92 -0.42 1.21 16 35 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 36 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 37 H 0.07 0.49 6.29 -51.93 -0.33 0.17 16 38 H 0.06 0.44 6.56 -51.93 -0.34 0.10 16 39 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.40 1.85 6.58 -40.82 -0.27 1.59 16 41 H 0.12 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.10 0.30 8.14 -51.93 -0.42 -0.13 16 43 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 44 H 0.13 1.04 8.06 -52.49 -0.42 0.61 16 45 H 0.16 0.75 8.06 -52.49 -0.42 0.33 16 LS Contribution 389.51 15.07 5.87 5.87 Total: -1.00 -38.15 389.51 -8.57 -46.71 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: -6.37 Total: 4.40 kcal Atomic # 6 Polarization: -6.05 SS G_CDS: -1.14 Total: -7.20 kcal Atomic # 7 Polarization: -44.37 SS G_CDS: 0.14 Total: -44.22 kcal Atomic # 8 Polarization: -18.26 SS G_CDS: 0.17 Total: -18.08 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Atomic # 16 Polarization: -1.58 SS G_CDS: -2.21 Total: -3.79 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -38.15 -8.57 -46.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001701114954.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.605 kcal (2) G-P(sol) polarization free energy of solvation -38.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds