Wall clock time and date at job start Sat Apr 11 2020 05:41:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 109.46974 * 2 1 4 4 N 1.46498 * 109.47180 * 120.00703 * 2 1 3 5 5 C 1.34775 * 119.99685 * 274.99474 * 4 2 1 6 6 O 1.21283 * 120.00424 * 0.02562 * 5 4 2 7 7 C 1.50702 * 119.99786 * 180.02562 * 5 4 2 8 8 C 1.50700 * 109.46869 * 180.02562 * 7 5 4 9 9 C 1.34856 * 125.88923 * 274.68394 * 8 7 5 10 10 C 1.40890 * 107.41519 * 179.88796 * 9 8 7 11 11 C 1.34852 * 107.41606 * 0.38354 * 10 9 8 12 12 N 1.36338 * 108.22125 * 359.76904 * 11 10 9 13 13 H 0.96998 * 125.63745 * 180.02562 * 12 11 10 14 14 C 1.53004 * 109.46769 * 240.00654 * 2 1 3 15 15 H 1.08995 * 109.47216 * 299.99814 * 14 2 1 16 16 C 1.52999 * 109.47083 * 179.97438 * 14 2 1 17 17 N 1.46498 * 109.47065 * 59.99703 * 14 2 1 18 18 C 1.34777 * 119.99828 * 204.72115 * 17 14 2 19 19 O 1.21283 * 120.00222 * 0.28168 * 18 17 14 20 20 C 1.50703 * 120.00290 * 180.27728 * 18 17 14 21 21 S 1.81000 * 109.47389 * 180.02562 * 20 18 17 22 22 C 1.76198 * 99.99715 * 179.97438 * 21 20 18 23 23 H 1.08001 * 120.00516 * 0.02562 * 22 21 20 24 24 C 1.38803 * 119.99710 * 179.97438 * 22 21 20 25 25 N 1.31626 * 120.00053 * 180.02562 * 24 22 21 26 26 Si 1.86798 * 120.00174 * 0.02562 * 24 22 21 27 27 H 1.48500 * 109.47356 * 89.99148 * 26 24 22 28 28 H 1.48497 * 109.47342 * 209.99750 * 26 24 22 29 29 H 1.48505 * 109.46847 * 329.99403 * 26 24 22 30 30 H 1.08994 * 109.47387 * 59.99348 * 1 2 3 31 31 H 1.08995 * 109.47099 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.46657 * 299.99141 * 1 2 3 33 33 H 0.97000 * 119.99792 * 95.00136 * 4 2 1 34 34 H 1.09004 * 109.46965 * 300.00190 * 7 5 4 35 35 H 1.08994 * 109.47464 * 60.00281 * 7 5 4 36 36 H 1.08003 * 126.28817 * 0.03258 * 9 8 7 37 37 H 1.07997 * 126.28705 * 180.12745 * 10 9 8 38 38 H 1.08002 * 125.88703 * 179.73423 * 11 10 9 39 39 H 1.09003 * 109.47054 * 59.99725 * 16 14 2 40 40 H 1.08996 * 109.47245 * 179.97438 * 16 14 2 41 41 H 1.08995 * 109.47098 * 300.00077 * 16 14 2 42 42 H 0.97001 * 120.00384 * 25.00562 * 17 14 2 43 43 H 1.08998 * 109.46954 * 300.00581 * 20 18 17 44 44 H 1.09002 * 109.46946 * 59.99717 * 20 18 17 45 45 H 0.97000 * 120.00636 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.1472 -0.0185 2.3570 6 8 1.8584 1.1582 2.4118 7 6 2.6501 -0.7289 3.5873 8 6 2.7001 0.2393 4.7411 9 6 3.7184 1.0757 5.0276 10 6 3.3563 1.8018 6.1795 11 6 2.1343 1.3752 6.5579 12 7 1.7264 0.4162 5.6789 13 1 0.8827 -0.0611 5.7146 14 6 2.0399 -0.7211 -1.2494 15 1 1.6766 -1.7488 -1.2495 16 6 3.5699 -0.7206 -1.2498 17 7 1.5515 -0.0304 -2.4454 18 6 1.4280 -0.7013 -3.6078 19 8 1.7164 -1.8781 -3.6624 20 6 0.9315 0.0107 -4.8398 21 16 0.8761 -1.1508 -6.2268 22 6 0.2785 -0.0840 -7.4954 23 1 0.0688 0.9523 -7.2753 24 6 0.0781 -0.5753 -8.7780 25 7 -0.3679 0.2217 -9.7259 26 14 0.4414 -2.3676 -9.1591 27 1 -0.7789 -3.1807 -8.9247 28 1 0.8576 -2.4973 -10.5786 29 1 1.5344 -2.8495 -8.2767 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5137 0.8901 33 1 2.2491 -1.6319 1.1523 34 1 1.9778 -1.5512 3.8323 35 1 3.6493 -1.1206 3.3977 36 1 4.6408 1.1730 4.4742 37 1 3.9503 2.5577 6.6715 38 1 1.5754 1.7315 7.4106 39 1 3.9337 -1.2343 -0.3598 40 1 3.9332 -1.2347 -2.1396 41 1 3.9329 0.3071 -1.2499 42 1 1.3209 0.9108 -2.4018 43 1 -0.0684 0.4029 -4.6545 44 1 1.6054 0.8329 -5.0805 45 1 -0.5083 -0.1216 -10.6221 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001701114955.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:01 Heat of formation + Delta-G solvation = -35.797990 kcal Electronic energy + Delta-G solvation = -25943.079281 eV Core-core repulsion = 22087.370049 eV Total energy + Delta-G solvation = -3855.709232 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.49096 -40.26808 -39.32908 -36.89649 -34.17616 -32.56297 -32.45517 -31.20300 -31.15945 -30.12484 -28.65621 -26.85508 -25.63326 -24.13516 -21.88830 -21.01721 -20.88246 -20.48391 -20.25401 -18.25146 -17.77270 -17.55932 -16.79278 -15.95211 -15.86800 -15.56454 -15.15243 -14.96681 -14.54481 -14.30644 -14.01360 -13.86742 -13.78094 -13.73703 -13.54884 -13.38890 -13.04614 -12.81647 -12.66326 -12.54118 -12.46265 -12.14556 -12.03880 -11.86660 -11.62627 -11.28915 -11.03210 -10.98255 -10.62676 -10.26061 -9.88119 -9.61463 -9.51400 -9.11001 -9.07454 -9.00886 -8.53084 -8.33488 -6.94274 -6.30549 -4.02664 1.86186 2.27626 2.51932 2.74998 2.89117 2.92369 3.04817 3.30734 3.37907 3.48256 3.66157 4.17859 4.27237 4.31146 4.57202 4.60439 4.68607 4.71179 4.88104 4.90313 4.96432 5.08461 5.13757 5.22738 5.23252 5.29428 5.43045 5.43512 5.49305 5.61145 5.73145 5.79421 5.93252 5.94891 5.98635 6.03486 6.05614 6.08785 6.47389 6.69383 6.83260 7.07817 7.27965 7.52322 7.86445 7.92375 8.40150 8.41737 9.15438 10.78665 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.040738 B = 0.001698 C = 0.001678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 687.153336 B =16483.836955 C =16677.874705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.137 3.863 3 H 0.094 0.906 4 N -0.723 5.723 5 C 0.513 3.487 6 O -0.523 6.523 7 C -0.071 4.071 8 C 0.029 3.971 9 C -0.179 4.179 10 C -0.201 4.201 11 C -0.012 4.012 12 N -0.553 5.553 13 H 0.411 0.589 14 C 0.138 3.862 15 H 0.092 0.908 16 C -0.164 4.164 17 N -0.729 5.729 18 C 0.535 3.465 19 O -0.518 6.518 20 C -0.125 4.125 21 S -0.141 6.141 22 C -0.522 4.522 23 H 0.088 0.912 24 C 0.096 3.904 25 N -0.880 5.880 26 Si 0.857 3.143 27 H -0.267 1.267 28 H -0.274 1.274 29 H -0.235 1.235 30 H 0.071 0.929 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.402 0.598 34 H 0.098 0.902 35 H 0.116 0.884 36 H 0.132 0.868 37 H 0.134 0.866 38 H 0.163 0.837 39 H 0.062 0.938 40 H 0.067 0.933 41 H 0.058 0.942 42 H 0.401 0.599 43 H 0.097 0.903 44 H 0.098 0.902 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.783 -1.268 32.167 32.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.032 3.968 3 H 0.112 0.888 4 N -0.376 5.376 5 C 0.299 3.701 6 O -0.398 6.398 7 C -0.112 4.112 8 C -0.084 4.084 9 C -0.204 4.204 10 C -0.225 4.225 11 C -0.143 4.143 12 N -0.148 5.148 13 H 0.247 0.753 14 C 0.032 3.968 15 H 0.110 0.890 16 C -0.222 4.222 17 N -0.384 5.384 18 C 0.321 3.679 19 O -0.392 6.392 20 C -0.275 4.275 21 S 0.085 5.915 22 C -0.670 4.670 23 H 0.106 0.894 24 C -0.113 4.113 25 N -0.516 5.516 26 Si 0.682 3.318 27 H -0.192 1.192 28 H -0.199 1.199 29 H -0.159 1.159 30 H 0.089 0.911 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.236 0.764 34 H 0.117 0.883 35 H 0.134 0.866 36 H 0.150 0.850 37 H 0.152 0.848 38 H 0.180 0.820 39 H 0.081 0.919 40 H 0.086 0.914 41 H 0.077 0.923 42 H 0.235 0.765 43 H 0.116 0.884 44 H 0.116 0.884 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 5.867 -2.416 31.922 32.546 hybrid contribution -0.726 0.603 -0.375 1.016 sum 5.141 -1.813 31.546 32.014 Atomic orbital electron populations 1.22170 0.94552 1.02620 1.02795 1.21126 0.94586 0.97673 0.83441 0.88828 1.45937 1.68126 1.14134 1.09414 1.20559 0.77829 0.87531 0.84207 1.90762 1.48652 1.15727 1.84648 1.20117 1.04597 0.96756 0.89743 1.19456 0.91224 1.03589 0.94134 1.20641 0.99757 1.00001 0.99967 1.20884 0.97125 1.04529 0.99997 1.21793 0.98234 0.96072 0.98175 1.41869 1.16992 1.32961 1.22980 0.75314 1.21018 0.94455 0.97695 0.83607 0.88950 1.22191 0.94826 1.02509 1.02671 1.45907 1.69350 1.14119 1.08994 1.20272 0.76725 0.87192 0.83703 1.90696 1.48359 1.15732 1.84461 1.23286 1.04580 1.03524 0.96154 1.84767 1.87399 1.16772 1.02544 1.22318 1.50623 0.98800 0.95251 0.89365 1.24713 0.93356 0.98270 0.94946 1.69935 1.43419 1.35790 1.02470 0.86735 0.81065 0.84850 0.79186 1.19230 1.19928 1.15943 0.91054 0.92193 0.92057 0.76374 0.88327 0.86603 0.84982 0.84803 0.82005 0.91860 0.91363 0.92292 0.76480 0.88436 0.88369 0.91927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.43 9.33 37.16 0.35 -1.08 16 2 C 0.14 1.14 2.21 -67.93 -0.15 0.99 16 3 H 0.09 0.91 7.58 -51.93 -0.39 0.51 16 4 N -0.72 -4.75 4.38 -53.81 -0.24 -4.98 16 5 C 0.51 4.23 7.79 -10.99 -0.09 4.14 16 6 O -0.52 -6.69 15.70 5.55 0.09 -6.60 16 7 C -0.07 -0.38 6.24 -29.03 -0.18 -0.56 16 8 C 0.03 0.23 5.66 -81.79 -0.46 -0.23 16 9 C -0.18 -1.67 10.77 -39.78 -0.43 -2.10 16 10 C -0.20 -1.76 10.86 -39.78 -0.43 -2.19 16 11 C -0.01 -0.08 11.94 -16.75 -0.20 -0.28 16 12 N -0.55 -3.84 6.07 -9.12 -0.06 -3.90 16 13 H 0.41 1.76 8.96 -40.82 -0.37 1.39 16 14 C 0.14 1.34 2.21 -67.93 -0.15 1.20 16 15 H 0.09 1.01 7.58 -51.93 -0.39 0.61 16 16 C -0.16 -1.54 9.32 37.16 0.35 -1.19 16 17 N -0.73 -8.43 4.38 -53.81 -0.24 -8.67 16 18 C 0.53 8.85 7.81 -10.98 -0.09 8.76 16 19 O -0.52 -10.43 15.53 5.55 0.09 -10.34 16 20 C -0.12 -2.32 6.16 36.01 0.22 -2.10 16 21 S -0.14 -3.50 18.55 -107.50 -1.99 -5.49 16 22 C -0.52 -14.89 10.04 30.94 0.31 -14.58 16 23 H 0.09 2.63 8.03 -52.49 -0.42 2.20 16 24 C 0.10 2.78 5.50 -17.43 -0.10 2.69 16 25 N -0.88 -26.37 13.97 55.49 0.78 -25.60 16 26 Si 0.86 21.56 27.74 -169.99 -4.72 16.84 16 27 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 28 H -0.27 -6.65 7.11 56.52 0.40 -6.24 16 29 H -0.24 -5.90 6.74 56.52 0.38 -5.52 16 30 H 0.07 0.63 7.44 -51.93 -0.39 0.24 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.40 1.65 8.39 -40.82 -0.34 1.31 16 34 H 0.10 0.28 8.14 -51.93 -0.42 -0.14 16 35 H 0.12 0.39 8.14 -51.93 -0.42 -0.04 16 36 H 0.13 1.12 8.06 -52.48 -0.42 0.70 16 37 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 38 H 0.16 0.72 8.06 -52.49 -0.42 0.29 16 39 H 0.06 0.46 7.45 -51.93 -0.39 0.07 16 40 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 42 H 0.40 3.72 8.39 -40.82 -0.34 3.38 16 43 H 0.10 1.68 8.14 -51.92 -0.42 1.26 16 44 H 0.10 1.71 8.14 -51.92 -0.42 1.29 16 45 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 394.53 15.07 5.95 5.95 Total: -1.00 -37.51 394.53 -8.23 -45.73 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: -6.84 Total: 3.60 kcal Atomic # 6 Polarization: -5.50 SS G_CDS: -1.05 Total: -6.55 kcal Atomic # 7 Polarization: -43.39 SS G_CDS: 0.25 Total: -43.14 kcal Atomic # 8 Polarization: -17.11 SS G_CDS: 0.17 Total: -16.94 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.72 Total: 16.84 kcal Atomic # 16 Polarization: -3.50 SS G_CDS: -1.99 Total: -5.49 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -37.51 -8.23 -45.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001701114955.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.935 kcal (2) G-P(sol) polarization free energy of solvation -37.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds