Wall clock time and date at job start Sat Apr 11 2020 05:41:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08995 * 109.47527 * 2 1 4 4 N 1.46498 * 109.46983 * 239.99909 * 2 1 3 5 5 C 1.34780 * 120.00109 * 85.00192 * 4 2 1 6 6 O 1.21279 * 120.00026 * 0.02562 * 5 4 2 7 7 C 1.50702 * 120.00031 * 179.97438 * 5 4 2 8 8 S 1.81001 * 109.47074 * 179.97438 * 7 5 4 9 9 C 1.76198 * 99.99981 * 180.02562 * 8 7 5 10 10 H 1.08005 * 119.99810 * 359.97438 * 9 8 7 11 11 C 1.38797 * 120.00190 * 180.02562 * 9 8 7 12 12 N 1.31636 * 119.99777 * 359.97438 * 11 9 8 13 13 Si 1.86793 * 120.00197 * 179.97438 * 11 9 8 14 14 H 1.48498 * 109.47110 * 59.99840 * 13 11 9 15 15 H 1.48510 * 109.46937 * 179.97438 * 13 11 9 16 16 H 1.48499 * 109.47330 * 299.99493 * 13 11 9 17 17 C 1.52998 * 109.46861 * 120.00204 * 2 1 3 18 18 H 1.09002 * 109.47283 * 184.99681 * 17 2 1 19 19 C 1.52998 * 109.47292 * 64.99750 * 17 2 1 20 20 N 1.46496 * 109.47415 * 304.99806 * 17 2 1 21 21 C 1.34777 * 120.00266 * 205.00509 * 20 17 2 22 22 O 1.21274 * 120.00135 * 0.27234 * 21 20 17 23 23 C 1.50706 * 119.99766 * 179.97438 * 21 20 17 24 24 C 1.50699 * 109.46817 * 179.97438 * 23 21 20 25 25 C 1.34851 * 125.89201 * 274.68939 * 24 23 21 26 26 C 1.40886 * 107.41916 * 179.88354 * 25 24 23 27 27 C 1.34856 * 107.41875 * 0.38345 * 26 25 24 28 28 N 1.36341 * 108.21374 * 359.76673 * 27 26 25 29 29 H 0.97006 * 125.63754 * 180.02562 * 28 27 26 30 30 H 1.09001 * 109.46683 * 300.00319 * 1 2 3 31 31 H 1.09001 * 109.47073 * 59.99924 * 1 2 3 32 32 H 1.08997 * 109.47261 * 179.97438 * 1 2 3 33 33 H 0.97005 * 120.00299 * 265.00653 * 4 2 1 34 34 H 1.08999 * 109.47480 * 300.00368 * 7 5 4 35 35 H 1.09004 * 109.46888 * 60.00423 * 7 5 4 36 36 H 0.97001 * 120.00258 * 179.97438 * 12 11 9 37 37 H 1.09001 * 109.47093 * 179.97438 * 19 17 2 38 38 H 1.09000 * 109.47516 * 299.99745 * 19 17 2 39 39 H 1.09002 * 109.47121 * 60.00062 * 19 17 2 40 40 H 0.96999 * 119.99691 * 24.99494 * 20 17 2 41 41 H 1.09000 * 109.47161 * 299.99737 * 23 21 20 42 42 H 1.09001 * 109.46740 * 59.99879 * 23 21 20 43 43 H 1.08000 * 126.28814 * 0.03197 * 25 24 23 44 44 H 1.07997 * 126.29482 * 180.12771 * 26 25 24 45 45 H 1.07997 * 125.89237 * 179.72973 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1471 -0.0183 -2.3572 6 8 1.8591 1.1586 -2.4115 7 6 2.6499 -0.7286 -3.5875 8 16 2.7100 0.4342 -4.9733 9 6 3.3132 -0.6310 -6.2406 10 1 3.5234 -1.6673 -6.0203 11 6 3.5192 -0.1382 -7.5217 12 7 3.2635 1.1249 -7.7900 13 14 4.1594 -1.2673 -8.8650 14 1 3.2089 -2.3913 -9.0615 15 1 4.2914 -0.5040 -10.1320 16 1 5.4862 -1.8044 -8.4697 17 6 2.0400 -0.7213 1.2492 18 1 3.1263 -0.6445 1.2952 19 6 1.6351 -2.1955 1.1879 20 7 1.4559 -0.1038 2.4424 21 6 2.0913 -0.1939 3.6275 22 8 3.1490 -0.7819 3.7053 23 6 1.4906 0.4419 4.8548 24 6 2.3905 0.1976 6.0386 25 6 2.3839 -0.8989 6.8236 26 6 3.3793 -0.7211 7.8047 27 6 3.9505 0.4810 7.5871 28 7 3.3477 1.0495 6.5044 29 1 3.5643 1.9167 6.1274 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 2.2490 -1.6319 -1.1527 34 1 3.6492 -1.1205 -3.3979 35 1 1.9776 -1.5509 -3.8325 36 1 3.4079 1.4694 -8.6852 37 1 1.9988 -2.7094 2.0777 38 1 0.5488 -2.2724 1.1421 39 1 2.0698 -2.6550 0.3002 40 1 0.6119 0.3701 2.3793 41 1 1.3851 1.5148 4.6935 42 1 0.5106 0.0053 5.0474 43 1 1.7364 -1.7568 6.7180 44 1 3.6349 -1.4175 8.5896 45 1 4.7475 0.9181 8.1703 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001701114956.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:04 Heat of formation + Delta-G solvation = -31.442985 kcal Electronic energy + Delta-G solvation = -25898.889429 eV Core-core repulsion = 22043.369044 eV Total energy + Delta-G solvation = -3855.520385 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.45950 -40.27615 -39.24202 -36.98233 -34.07611 -32.51279 -32.44016 -31.16822 -31.12733 -29.73057 -28.52163 -26.88197 -25.51653 -24.82389 -21.85772 -20.85888 -20.59524 -20.36024 -19.97305 -18.25701 -17.76258 -17.52606 -16.58417 -16.17482 -15.76035 -15.48224 -15.03799 -14.81481 -14.70566 -14.50590 -14.02157 -13.99266 -13.79990 -13.60701 -13.37790 -13.22181 -12.93972 -12.76289 -12.57987 -12.50751 -12.44808 -12.06311 -11.97321 -11.92047 -11.24464 -11.10040 -11.05643 -11.04683 -10.78078 -10.20699 -9.84409 -9.49654 -9.41157 -9.08508 -9.08058 -9.00603 -8.30357 -8.26691 -6.52067 -6.23090 -3.93948 1.89925 2.31474 2.60833 2.85841 3.02368 3.03476 3.15904 3.22760 3.27227 3.32679 3.70655 4.19149 4.25990 4.32956 4.58445 4.63072 4.67666 4.88745 4.94011 4.98355 5.07831 5.12077 5.14705 5.18624 5.25672 5.39379 5.45197 5.46320 5.60296 5.66192 5.77870 5.85912 5.90416 5.97576 6.05751 6.10873 6.12189 6.15532 6.56061 6.72418 6.86427 7.11493 7.31596 7.57831 7.62591 7.90478 8.33571 8.54537 9.22226 10.84257 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.028613 B = 0.001685 C = 0.001671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.348629 B =16614.525587 C =16753.557866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.138 3.862 3 H 0.093 0.907 4 N -0.732 5.732 5 C 0.535 3.465 6 O -0.516 6.516 7 C -0.154 4.154 8 S -0.059 6.059 9 C -0.537 4.537 10 H 0.072 0.928 11 C 0.074 3.926 12 N -0.868 5.868 13 Si 0.919 3.081 14 H -0.274 1.274 15 H -0.283 1.283 16 H -0.274 1.274 17 C 0.137 3.863 18 H 0.094 0.906 19 C -0.167 4.167 20 N -0.724 5.724 21 C 0.512 3.488 22 O -0.523 6.523 23 C -0.072 4.072 24 C 0.029 3.971 25 C -0.180 4.180 26 C -0.201 4.201 27 C -0.011 4.011 28 N -0.553 5.553 29 H 0.412 0.588 30 H 0.059 0.941 31 H 0.070 0.930 32 H 0.063 0.937 33 H 0.399 0.601 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.269 0.731 37 H 0.065 0.935 38 H 0.064 0.936 39 H 0.067 0.933 40 H 0.401 0.599 41 H 0.099 0.901 42 H 0.115 0.885 43 H 0.132 0.868 44 H 0.134 0.866 45 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.761 -3.189 29.475 30.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.032 3.968 3 H 0.111 0.889 4 N -0.389 5.389 5 C 0.321 3.679 6 O -0.390 6.390 7 C -0.305 4.305 8 S 0.167 5.833 9 C -0.685 4.685 10 H 0.091 0.909 11 C -0.135 4.135 12 N -0.503 5.503 13 Si 0.745 3.255 14 H -0.199 1.199 15 H -0.208 1.208 16 H -0.199 1.199 17 C 0.031 3.969 18 H 0.112 0.888 19 C -0.225 4.225 20 N -0.379 5.379 21 C 0.297 3.703 22 O -0.397 6.397 23 C -0.112 4.112 24 C -0.084 4.084 25 C -0.205 4.205 26 C -0.226 4.226 27 C -0.142 4.142 28 N -0.147 5.147 29 H 0.248 0.752 30 H 0.078 0.922 31 H 0.090 0.910 32 H 0.082 0.918 33 H 0.235 0.765 34 H 0.109 0.891 35 H 0.109 0.891 36 H 0.079 0.921 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.085 0.915 40 H 0.237 0.763 41 H 0.118 0.882 42 H 0.133 0.867 43 H 0.150 0.850 44 H 0.152 0.848 45 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -5.428 -1.361 29.237 29.768 hybrid contribution 0.582 -1.963 -0.999 2.278 sum -4.846 -3.324 28.238 28.843 Atomic orbital electron populations 1.22267 0.95203 1.02557 1.02578 1.20965 0.94424 0.97702 0.83724 0.88897 1.46089 1.69597 1.14048 1.09126 1.20331 0.76662 0.87201 0.83696 1.90697 1.48192 1.15713 1.84377 1.23542 1.03749 1.04923 0.98279 1.85376 1.86319 1.12875 0.98691 1.22831 1.51123 0.98167 0.96370 0.90948 1.24988 0.95059 0.95545 0.97944 1.70007 1.45448 1.13223 1.21627 0.86223 0.79334 0.80008 0.79932 1.19932 1.20800 1.19930 1.21094 0.99554 0.92666 0.83556 0.88775 1.22242 1.02211 0.95375 1.02719 1.46085 1.26231 1.57631 1.07957 1.20588 0.85103 0.80351 0.84226 1.90761 1.21924 1.41840 1.85221 1.20121 0.98938 1.02672 0.89509 1.19457 0.96578 0.93493 0.98831 1.20620 1.03174 0.98253 0.98415 1.20874 1.00992 0.97836 1.02903 1.21799 1.02405 0.96550 0.93463 1.41886 1.29643 1.17820 1.25394 0.75231 0.92213 0.91049 0.91803 0.76537 0.89139 0.89140 0.92121 0.91624 0.91669 0.91454 0.76274 0.88249 0.86665 0.85036 0.84829 0.81993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.50 9.00 37.16 0.33 -1.17 16 2 C 0.14 1.45 2.62 -67.93 -0.18 1.27 16 3 H 0.09 1.17 7.58 -51.93 -0.39 0.78 16 4 N -0.73 -9.14 4.99 -53.81 -0.27 -9.41 16 5 C 0.53 9.53 7.81 -10.98 -0.09 9.45 16 6 O -0.52 -11.17 15.52 5.56 0.09 -11.09 16 7 C -0.15 -3.04 6.16 36.01 0.22 -2.81 16 8 S -0.06 -1.58 20.57 -107.50 -2.21 -3.80 16 9 C -0.54 -15.18 9.50 30.94 0.29 -14.89 16 10 H 0.07 1.93 7.80 -52.48 -0.41 1.52 16 11 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 12 N -0.87 -26.01 13.22 55.49 0.73 -25.28 16 13 Si 0.92 21.31 29.55 -169.99 -5.02 16.28 16 14 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 15 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 16 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 17 C 0.14 1.23 2.62 -67.93 -0.18 1.05 16 18 H 0.09 1.06 7.57 -51.93 -0.39 0.67 16 19 C -0.17 -1.34 9.00 37.16 0.33 -1.00 16 20 N -0.72 -5.19 4.99 -53.81 -0.27 -5.46 16 21 C 0.51 4.55 7.79 -10.98 -0.09 4.46 16 22 O -0.52 -7.06 15.69 5.56 0.09 -6.97 16 23 C -0.07 -0.42 6.24 -29.03 -0.18 -0.60 16 24 C 0.03 0.25 5.66 -81.79 -0.46 -0.21 16 25 C -0.18 -1.73 10.76 -39.78 -0.43 -2.15 16 26 C -0.20 -1.83 10.86 -39.78 -0.43 -2.26 16 27 C -0.01 -0.09 11.94 -16.75 -0.20 -0.29 16 28 N -0.55 -4.16 6.07 -9.12 -0.06 -4.22 16 29 H 0.41 2.06 8.96 -40.82 -0.37 1.70 16 30 H 0.06 0.37 6.29 -51.93 -0.33 0.04 16 31 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.06 0.51 6.57 -51.93 -0.34 0.17 16 33 H 0.40 3.99 6.58 -40.82 -0.27 3.72 16 34 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 35 H 0.09 1.63 8.14 -51.91 -0.42 1.21 16 36 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 37 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.06 0.46 6.57 -51.93 -0.34 0.11 16 39 H 0.07 0.50 6.29 -51.93 -0.33 0.17 16 40 H 0.40 1.85 6.58 -40.82 -0.27 1.59 16 41 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 42 H 0.12 0.41 8.14 -51.93 -0.42 -0.02 16 43 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 44 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 45 H 0.16 0.80 8.06 -52.49 -0.42 0.37 16 LS Contribution 389.51 15.07 5.87 5.87 Total: -1.00 -38.05 389.51 -8.57 -46.61 By element: Atomic # 1 Polarization: 10.98 SS G_CDS: -6.37 Total: 4.61 kcal Atomic # 6 Polarization: -6.01 SS G_CDS: -1.14 Total: -7.15 kcal Atomic # 7 Polarization: -44.50 SS G_CDS: 0.14 Total: -44.36 kcal Atomic # 8 Polarization: -18.24 SS G_CDS: 0.17 Total: -18.06 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.28 kcal Atomic # 16 Polarization: -1.58 SS G_CDS: -2.21 Total: -3.80 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -38.05 -8.57 -46.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001701114956.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.169 kcal (2) G-P(sol) polarization free energy of solvation -38.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds