Wall clock time and date at job start Sat Apr 11 2020 05:41:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 109.46925 * 2 1 4 4 N 1.46505 * 109.46964 * 120.00058 * 2 1 3 5 5 C 1.34779 * 119.99896 * 275.00218 * 4 2 1 6 6 O 1.21282 * 119.99840 * 359.97438 * 5 4 2 7 7 C 1.50700 * 119.99975 * 180.02562 * 5 4 2 8 8 S 1.80997 * 109.46908 * 179.97438 * 7 5 4 9 9 C 1.76204 * 99.99823 * 179.97438 * 8 7 5 10 10 H 1.08005 * 119.99924 * 359.97438 * 9 8 7 11 11 C 1.38796 * 120.00054 * 179.97438 * 9 8 7 12 12 N 1.31625 * 120.00164 * 359.97438 * 11 9 8 13 13 Si 1.86802 * 119.99771 * 179.97438 * 11 9 8 14 14 H 1.48502 * 109.47029 * 90.00187 * 13 11 9 15 15 H 1.48500 * 109.47166 * 209.99828 * 13 11 9 16 16 H 1.48497 * 109.47441 * 330.00128 * 13 11 9 17 17 C 1.52999 * 109.46803 * 239.99892 * 2 1 3 18 18 H 1.08996 * 109.47469 * 299.99775 * 17 2 1 19 19 C 1.53003 * 109.46917 * 180.02562 * 17 2 1 20 20 N 1.46497 * 109.47017 * 60.00429 * 17 2 1 21 21 C 1.34780 * 119.99566 * 205.00005 * 20 17 2 22 22 O 1.21280 * 120.00423 * 359.97438 * 21 20 17 23 23 C 1.50701 * 119.99795 * 180.02562 * 21 20 17 24 24 C 1.50703 * 109.47064 * 179.97438 * 23 21 20 25 25 C 1.34852 * 125.88922 * 274.68606 * 24 23 21 26 26 C 1.40892 * 107.41664 * 179.88544 * 25 24 23 27 27 C 1.34854 * 107.41763 * 0.38108 * 26 25 24 28 28 N 1.36339 * 125.89151 * 94.99879 * 24 23 21 29 29 H 0.97003 * 125.63769 * 359.95878 * 28 24 23 30 30 H 1.08996 * 109.47443 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.46920 * 299.99799 * 1 2 3 32 32 H 1.08996 * 109.47141 * 59.99681 * 1 2 3 33 33 H 0.97004 * 119.99657 * 94.99843 * 4 2 1 34 34 H 1.09001 * 109.46429 * 299.99417 * 7 5 4 35 35 H 1.08992 * 109.47479 * 59.99165 * 7 5 4 36 36 H 0.96999 * 120.00044 * 179.97438 * 12 11 9 37 37 H 1.09006 * 109.46570 * 299.99863 * 19 17 2 38 38 H 1.09000 * 109.47614 * 59.99489 * 19 17 2 39 39 H 1.08998 * 109.47302 * 180.02562 * 19 17 2 40 40 H 0.96995 * 120.00423 * 24.99311 * 20 17 2 41 41 H 1.09002 * 109.47060 * 299.99722 * 23 21 20 42 42 H 1.09001 * 109.47380 * 59.99809 * 23 21 20 43 43 H 1.08003 * 126.29285 * 0.02790 * 25 24 23 44 44 H 1.07999 * 126.29338 * 180.13129 * 26 25 24 45 45 H 1.07994 * 125.89268 * 179.72770 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.1470 -0.0183 2.3572 6 8 1.8590 1.1586 2.4115 7 6 2.6499 -0.7286 3.5875 8 16 2.7112 0.4346 4.9729 9 6 3.3142 -0.6306 6.2403 10 1 3.5228 -1.6673 6.0205 11 6 3.5210 -0.1376 7.5212 12 7 3.2673 1.1259 7.7890 13 14 4.1596 -1.2672 8.8649 14 1 5.6441 -1.2298 8.8790 15 1 3.6406 -0.8142 10.1805 16 1 3.7019 -2.6554 8.6036 17 6 2.0400 -0.7213 -1.2492 18 1 1.6767 -1.7489 -1.2492 19 6 3.5700 -0.7219 -1.2489 20 7 1.5517 -0.0306 -2.4454 21 6 1.4229 -0.7030 -3.6063 22 8 1.7117 -1.8797 -3.6609 23 6 0.9212 0.0075 -4.8369 24 6 0.8709 -0.9607 -5.9907 25 6 1.8978 -1.2707 -6.8079 26 6 1.4235 -2.2121 -7.7427 27 6 0.1226 -2.4353 -7.4663 28 7 -0.2223 -1.6699 -6.3919 29 1 -1.1002 -1.6359 -5.9807 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3633 0.5139 -0.8899 33 1 2.2490 -1.6319 1.1526 34 1 1.9775 -1.5508 3.8325 35 1 3.6491 -1.1204 3.3980 36 1 3.4115 1.4704 8.6842 37 1 3.9336 0.3058 -1.2488 38 1 3.9331 -1.2358 -0.3589 39 1 3.9333 -1.2353 -2.1391 40 1 1.3210 0.9105 -2.4018 41 1 -0.0780 0.4001 -4.6478 42 1 1.5941 0.8293 -5.0818 43 1 2.9002 -0.8723 -6.7543 44 1 1.9954 -2.6680 -8.5373 45 1 -0.5332 -3.1043 -8.0036 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001701114957.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:06 Heat of formation + Delta-G solvation = -36.200799 kcal Electronic energy + Delta-G solvation = -25893.312999 eV Core-core repulsion = 22037.586300 eV Total energy + Delta-G solvation = -3855.726699 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.47085 -40.21393 -39.23860 -36.82553 -34.10561 -32.52455 -32.44580 -31.18508 -31.07695 -30.07002 -28.53497 -26.82793 -25.50452 -24.07733 -21.82058 -20.97601 -20.85412 -20.43682 -20.18691 -18.20933 -17.75577 -17.53146 -16.70376 -15.88288 -15.80026 -15.51328 -15.03165 -14.81835 -14.53460 -14.29575 -14.03610 -13.86944 -13.78754 -13.63753 -13.55280 -13.24388 -12.90730 -12.71411 -12.58411 -12.48056 -12.47699 -12.05269 -11.95912 -11.81688 -11.55602 -11.07768 -11.04289 -10.92655 -10.77220 -10.22895 -9.83655 -9.52678 -9.43257 -9.09396 -9.08922 -8.96885 -8.31729 -8.26627 -6.52353 -6.23634 -3.94338 1.88362 2.30857 2.58307 2.84149 3.01347 3.02958 3.16069 3.21327 3.27871 3.34362 3.73067 4.18641 4.22764 4.30506 4.60734 4.63365 4.73705 4.91985 4.93081 4.98881 5.08966 5.11803 5.23693 5.24801 5.30453 5.45012 5.47429 5.49799 5.62015 5.66480 5.85071 5.86428 5.96380 6.00519 6.05032 6.08592 6.11535 6.13918 6.56107 6.71071 6.84963 7.11502 7.29901 7.57885 7.62679 7.89722 8.33448 8.54359 9.21972 10.83784 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.037623 B = 0.001654 C = 0.001629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.053272 B =16921.842691 C =17188.263849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.138 3.862 3 H 0.093 0.907 4 N -0.731 5.731 5 C 0.536 3.464 6 O -0.516 6.516 7 C -0.154 4.154 8 S -0.060 6.060 9 C -0.536 4.536 10 H 0.073 0.927 11 C 0.074 3.926 12 N -0.868 5.868 13 Si 0.919 3.081 14 H -0.277 1.277 15 H -0.282 1.282 16 H -0.272 1.272 17 C 0.137 3.863 18 H 0.092 0.908 19 C -0.163 4.163 20 N -0.723 5.723 21 C 0.513 3.487 22 O -0.524 6.524 23 C -0.072 4.072 24 C 0.030 3.970 25 C -0.179 4.179 26 C -0.201 4.201 27 C -0.012 4.012 28 N -0.553 5.553 29 H 0.411 0.589 30 H 0.056 0.944 31 H 0.068 0.932 32 H 0.061 0.939 33 H 0.399 0.601 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.268 0.732 37 H 0.060 0.940 38 H 0.070 0.930 39 H 0.062 0.938 40 H 0.402 0.598 41 H 0.099 0.901 42 H 0.116 0.884 43 H 0.132 0.868 44 H 0.134 0.866 45 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.761 -3.945 -29.437 30.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.032 3.968 3 H 0.111 0.889 4 N -0.386 5.386 5 C 0.322 3.678 6 O -0.390 6.390 7 C -0.305 4.305 8 S 0.167 5.833 9 C -0.684 4.684 10 H 0.091 0.909 11 C -0.135 4.135 12 N -0.503 5.503 13 Si 0.745 3.255 14 H -0.203 1.203 15 H -0.207 1.207 16 H -0.197 1.197 17 C 0.032 3.968 18 H 0.110 0.890 19 C -0.222 4.222 20 N -0.376 5.376 21 C 0.299 3.701 22 O -0.399 6.399 23 C -0.112 4.112 24 C -0.083 4.083 25 C -0.204 4.204 26 C -0.226 4.226 27 C -0.143 4.143 28 N -0.148 5.148 29 H 0.247 0.753 30 H 0.075 0.925 31 H 0.087 0.913 32 H 0.080 0.920 33 H 0.233 0.767 34 H 0.108 0.892 35 H 0.109 0.891 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.089 0.911 39 H 0.081 0.919 40 H 0.236 0.764 41 H 0.117 0.883 42 H 0.134 0.866 43 H 0.150 0.850 44 H 0.152 0.848 45 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -7.170 -2.686 -29.177 30.165 hybrid contribution 0.360 -2.122 1.007 2.376 sum -6.810 -4.808 -28.171 29.378 Atomic orbital electron populations 1.22188 0.95029 1.02301 1.02613 1.21006 0.94314 0.97802 0.83700 0.88908 1.45949 1.69537 1.13974 1.09122 1.20302 0.76669 0.87182 0.83607 1.90698 1.48252 1.15725 1.84329 1.23537 1.03745 1.04915 0.98276 1.85375 1.86330 1.12822 0.98767 1.22872 1.51023 0.98157 0.96385 0.90905 1.24985 0.95056 0.95542 0.97946 1.70012 1.45489 1.13217 1.21573 0.86170 0.79023 0.80199 0.80128 1.20252 1.20743 1.19697 1.21124 0.94716 0.97509 0.83428 0.89015 1.22173 0.94450 1.02742 1.02808 1.45942 1.68069 1.14156 1.09405 1.20554 0.77924 0.87526 0.84126 1.90758 1.48722 1.15831 1.84569 1.20122 1.04019 0.97205 0.89896 1.19459 0.88269 1.01151 0.99442 1.20637 0.98218 1.03025 0.98542 1.20881 0.94744 1.03689 1.03241 1.21791 0.97657 1.01244 0.93595 1.41874 1.11388 1.35155 1.26375 0.75295 0.92486 0.91311 0.92016 0.76660 0.89166 0.89137 0.92174 0.92106 0.91120 0.91904 0.76358 0.88299 0.86612 0.85006 0.84825 0.82014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.60 9.33 37.16 0.35 -1.26 16 2 C 0.14 1.42 2.21 -67.93 -0.15 1.27 16 3 H 0.09 1.08 7.58 -51.93 -0.39 0.69 16 4 N -0.73 -8.98 4.38 -53.80 -0.24 -9.21 16 5 C 0.54 9.40 7.81 -10.98 -0.09 9.32 16 6 O -0.52 -11.02 15.52 5.56 0.09 -10.93 16 7 C -0.15 -3.01 6.16 36.01 0.22 -2.78 16 8 S -0.06 -1.58 20.57 -107.50 -2.21 -3.80 16 9 C -0.54 -15.12 9.50 30.94 0.29 -14.83 16 10 H 0.07 1.95 7.80 -52.48 -0.41 1.54 16 11 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 12 N -0.87 -25.93 13.22 55.49 0.73 -25.20 16 13 Si 0.92 21.27 29.55 -169.99 -5.02 16.25 16 14 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 15 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 16 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 17 C 0.14 1.21 2.20 -67.93 -0.15 1.06 16 18 H 0.09 0.92 7.58 -51.93 -0.39 0.53 16 19 C -0.16 -1.53 9.33 37.16 0.35 -1.18 16 20 N -0.72 -5.04 4.38 -53.81 -0.24 -5.28 16 21 C 0.51 4.38 7.79 -10.98 -0.09 4.30 16 22 O -0.52 -6.83 15.70 5.56 0.09 -6.74 16 23 C -0.07 -0.40 6.24 -29.03 -0.18 -0.58 16 24 C 0.03 0.25 5.66 -81.79 -0.46 -0.22 16 25 C -0.18 -1.71 10.76 -39.78 -0.43 -2.14 16 26 C -0.20 -1.79 10.86 -39.78 -0.43 -2.22 16 27 C -0.01 -0.09 11.94 -16.75 -0.20 -0.29 16 28 N -0.55 -3.94 6.07 -9.12 -0.06 -4.00 16 29 H 0.41 1.84 8.96 -40.82 -0.37 1.47 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 32 H 0.06 0.46 7.45 -51.93 -0.39 0.08 16 33 H 0.40 3.96 8.39 -40.82 -0.34 3.61 16 34 H 0.09 1.63 8.14 -51.92 -0.42 1.21 16 35 H 0.09 1.63 8.14 -51.92 -0.42 1.21 16 36 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 37 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.07 0.66 7.44 -51.93 -0.39 0.28 16 39 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.40 1.83 8.39 -40.82 -0.34 1.49 16 41 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 42 H 0.12 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.13 1.14 8.06 -52.48 -0.42 0.72 16 44 H 0.13 0.99 8.06 -52.49 -0.42 0.56 16 45 H 0.16 0.74 8.06 -52.49 -0.42 0.32 16 LS Contribution 397.21 15.07 5.99 5.99 Total: -1.00 -37.76 397.21 -8.74 -46.50 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: -6.81 Total: 3.97 kcal Atomic # 6 Polarization: -6.48 SS G_CDS: -1.06 Total: -7.55 kcal Atomic # 7 Polarization: -43.89 SS G_CDS: 0.21 Total: -43.69 kcal Atomic # 8 Polarization: -17.85 SS G_CDS: 0.17 Total: -17.68 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Atomic # 16 Polarization: -1.58 SS G_CDS: -2.21 Total: -3.80 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -37.76 -8.74 -46.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001701114957.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.300 kcal (2) G-P(sol) polarization free energy of solvation -37.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds