Wall clock time and date at job start Sat Apr 11 2020 05:41:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.47524 * 2 1 4 4 C 1.52997 * 109.47484 * 239.99235 * 2 1 3 5 5 C 1.53002 * 109.47535 * 174.99845 * 4 2 1 6 6 N 1.46494 * 109.47001 * 180.02562 * 5 4 2 7 7 C 1.34784 * 119.99635 * 180.02562 * 6 5 4 8 8 O 1.21623 * 120.00016 * 0.02562 * 7 6 5 9 9 C 1.47265 * 119.99864 * 179.97438 * 7 6 5 10 10 C 1.46688 * 126.94209 * 0.02954 * 9 7 6 11 11 C 1.34478 * 106.33251 * 179.97438 * 10 9 7 12 12 N 1.36451 * 108.85747 * 359.97438 * 11 10 9 13 13 C 1.46501 * 124.84870 * 179.97438 * 12 11 10 14 14 C 1.34659 * 110.29617 * 359.74948 * 12 11 10 15 15 N 1.46499 * 109.46890 * 119.99323 * 2 1 3 16 16 C 1.34779 * 120.00521 * 274.99965 * 15 2 1 17 17 O 1.21287 * 119.99438 * 359.97438 * 16 15 2 18 18 C 1.50693 * 120.00501 * 180.02562 * 16 15 2 19 19 S 1.80995 * 109.47445 * 179.97438 * 18 16 15 20 20 C 1.76196 * 100.00408 * 180.02562 * 19 18 16 21 21 H 1.08001 * 119.99809 * 0.02562 * 20 19 18 22 22 C 1.38792 * 120.00453 * 180.02562 * 20 19 18 23 23 N 1.31634 * 120.00416 * 180.02562 * 22 20 19 24 24 Si 1.86803 * 119.99941 * 359.97438 * 22 20 19 25 25 H 1.48498 * 109.46976 * 89.99962 * 24 22 20 26 26 H 1.48495 * 109.47413 * 210.00484 * 24 22 20 27 27 H 1.48503 * 109.46881 * 330.00426 * 24 22 20 28 28 H 1.09005 * 109.47123 * 300.00881 * 1 2 3 29 29 H 1.09000 * 109.46980 * 60.00712 * 1 2 3 30 30 H 1.08997 * 109.47519 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46889 * 55.00169 * 4 2 1 32 32 H 1.08996 * 109.47223 * 295.00949 * 4 2 1 33 33 H 1.09005 * 109.46767 * 60.00250 * 5 4 2 34 34 H 1.09002 * 109.47113 * 300.00590 * 5 4 2 35 35 H 0.96995 * 120.00292 * 0.27801 * 6 5 4 36 36 H 1.07999 * 126.83641 * 359.95180 * 10 9 7 37 37 H 1.08006 * 125.57521 * 180.02562 * 11 10 9 38 38 H 1.08999 * 109.47078 * 90.03158 * 13 12 11 39 39 H 1.09003 * 109.46675 * 210.02190 * 13 12 11 40 40 H 1.08996 * 109.47380 * 330.02294 * 13 12 11 41 41 H 1.07998 * 125.80101 * 180.29377 * 14 12 11 42 42 H 0.97006 * 119.99883 * 94.99986 * 15 2 1 43 43 H 1.09003 * 109.47217 * 300.00483 * 18 16 15 44 44 H 1.09004 * 109.47278 * 59.99863 * 18 16 15 45 45 H 0.96998 * 119.99772 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7214 -1.2491 5 6 3.5649 -0.6134 -1.3136 6 7 4.0531 -1.3036 -2.5099 7 6 5.3741 -1.3398 -2.7751 8 8 6.1608 -0.7997 -2.0210 9 6 5.8650 -2.0341 -3.9775 10 6 5.0577 -2.7321 -4.9838 11 6 5.9218 -3.2111 -5.8961 12 7 7.1889 -2.8622 -5.5292 13 6 8.4014 -3.2061 -6.2761 14 6 7.1651 -2.1524 -4.3851 15 7 2.0182 -0.6905 1.1963 16 6 2.1470 -0.0181 2.3572 17 8 1.8590 1.1589 2.4114 18 6 2.6498 -0.7282 3.5876 19 16 2.7113 0.4351 4.9729 20 6 3.3156 -0.6297 6.2400 21 1 3.5256 -1.6660 6.0200 22 6 3.5219 -0.1367 7.5209 23 7 3.9739 -0.9320 8.4675 24 14 3.1595 1.6559 7.9014 25 1 1.7487 1.7925 8.3442 26 1 4.0648 2.1258 8.9807 27 1 3.3769 2.4746 6.6816 28 1 -0.3634 0.5140 0.8899 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3634 -1.0276 0.0005 31 1 1.6054 -0.2619 -2.1369 32 1 1.7516 -1.7716 -1.2054 33 1 3.9995 -1.0729 -0.4258 34 1 3.8532 0.4369 -1.3573 35 1 3.4255 -1.7315 -3.1131 36 1 3.9831 -2.8402 -4.9906 37 1 5.6563 -3.7785 -6.7760 38 1 8.6182 -2.4196 -6.9989 39 1 9.2383 -3.3048 -5.5846 40 1 8.2499 -4.1497 -6.8002 41 1 8.0266 -1.7475 -3.8748 42 1 2.2489 -1.6317 1.1528 43 1 1.9776 -1.5505 3.8327 44 1 3.6491 -1.1200 3.3981 45 1 4.1177 -0.5875 9.3627 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001704131582.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:08 Heat of formation + Delta-G solvation = -34.099869 kcal Electronic energy + Delta-G solvation = -25490.599128 eV Core-core repulsion = 21634.963532 eV Total energy + Delta-G solvation = -3855.635596 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.59931 -39.66926 -39.12674 -36.56580 -34.54142 -33.24810 -32.39175 -31.81063 -29.78442 -29.28488 -28.53257 -27.03246 -25.56526 -24.09967 -22.31745 -21.57182 -20.55552 -20.37289 -19.84500 -18.32499 -17.78474 -16.62721 -16.30387 -16.02624 -15.92696 -15.76124 -15.28071 -14.97830 -14.87917 -14.57451 -14.18029 -13.78985 -13.61842 -13.54427 -13.51619 -13.31066 -13.00889 -12.89029 -12.75029 -12.73662 -12.43724 -12.18572 -11.99188 -11.68293 -11.49490 -11.21421 -11.07309 -10.96436 -10.54436 -10.04537 -9.80944 -9.44429 -9.27290 -9.02186 -8.96893 -8.91657 -8.71040 -8.44492 -6.85979 -6.24183 -3.95349 1.48461 2.01890 2.35522 2.82342 3.04154 3.15292 3.35151 3.38353 3.40545 3.55195 3.71353 4.20387 4.37816 4.46447 4.52013 4.56627 4.57196 4.65269 4.77623 4.83350 4.84033 4.93697 5.04573 5.14889 5.26213 5.28764 5.37911 5.40272 5.48813 5.61237 5.63638 5.68638 5.83409 5.86575 5.99628 6.08460 6.16275 6.27676 6.34540 6.59745 6.63393 6.77365 7.41965 7.67244 7.98961 8.20278 8.46674 8.56115 9.22143 10.85079 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.015361 B = 0.001901 C = 0.001746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1822.305745 B =14727.475769 C =16029.489616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.147 3.853 3 H 0.091 0.909 4 C -0.137 4.137 5 C 0.118 3.882 6 N -0.728 5.728 7 C 0.589 3.411 8 O -0.548 6.548 9 C -0.235 4.235 10 C -0.170 4.170 11 C -0.018 4.018 12 N -0.448 5.448 13 C 0.068 3.932 14 C 0.076 3.924 15 N -0.733 5.733 16 C 0.533 3.467 17 O -0.519 6.519 18 C -0.125 4.125 19 S -0.142 6.142 20 C -0.520 4.520 21 H 0.088 0.912 22 C 0.095 3.905 23 N -0.881 5.881 24 Si 0.857 3.143 25 H -0.267 1.267 26 H -0.275 1.275 27 H -0.235 1.235 28 H 0.066 0.934 29 H 0.063 0.937 30 H 0.056 0.944 31 H 0.084 0.916 32 H 0.075 0.925 33 H 0.072 0.928 34 H 0.069 0.931 35 H 0.399 0.601 36 H 0.145 0.855 37 H 0.167 0.833 38 H 0.076 0.924 39 H 0.087 0.913 40 H 0.086 0.914 41 H 0.175 0.825 42 H 0.399 0.601 43 H 0.096 0.904 44 H 0.097 0.903 45 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.367 -7.438 -35.149 35.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.041 3.959 3 H 0.109 0.891 4 C -0.175 4.175 5 C -0.005 4.005 6 N -0.379 5.379 7 C 0.377 3.623 8 O -0.427 6.427 9 C -0.245 4.245 10 C -0.194 4.194 11 C -0.144 4.144 12 N -0.124 5.124 13 C -0.074 4.074 14 C -0.060 4.060 15 N -0.388 5.388 16 C 0.319 3.681 17 O -0.394 6.394 18 C -0.275 4.275 19 S 0.084 5.916 20 C -0.668 4.668 21 H 0.106 0.894 22 C -0.113 4.113 23 N -0.518 5.518 24 Si 0.682 3.318 25 H -0.193 1.193 26 H -0.200 1.200 27 H -0.159 1.159 28 H 0.085 0.915 29 H 0.082 0.918 30 H 0.075 0.925 31 H 0.103 0.897 32 H 0.094 0.906 33 H 0.091 0.909 34 H 0.088 0.912 35 H 0.233 0.767 36 H 0.163 0.837 37 H 0.184 0.816 38 H 0.094 0.906 39 H 0.106 0.894 40 H 0.105 0.895 41 H 0.193 0.807 42 H 0.233 0.767 43 H 0.114 0.886 44 H 0.116 0.884 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.792 -5.198 -34.520 34.955 hybrid contribution 0.050 -1.532 -0.007 1.533 sum 1.843 -6.730 -34.527 35.225 Atomic orbital electron populations 1.22171 0.95013 1.02138 1.02775 1.20791 0.94119 0.97749 0.83208 0.89060 1.22103 0.94779 1.02031 0.98632 1.21377 0.93347 0.97995 0.87787 1.45748 1.07385 1.57792 1.26991 1.17390 0.81924 0.78915 0.84056 1.90818 1.55529 1.46627 1.49700 1.20349 0.93530 1.11099 0.99507 1.22018 0.98673 1.03317 0.95423 1.21757 0.82739 1.07299 1.02628 1.43649 1.07212 1.41701 1.19795 1.22147 0.85634 1.02325 0.97273 1.21839 0.98654 0.97310 0.88162 1.46087 1.69223 1.13973 1.09493 1.20258 0.76795 0.87211 0.83858 1.90695 1.48494 1.15702 1.84461 1.23286 1.04527 1.03417 0.96319 1.84765 1.87062 1.16620 1.03107 1.22328 1.50458 0.98732 0.95287 0.89402 1.24714 0.93388 0.98274 0.94967 1.69944 1.43531 1.35792 1.02510 0.86731 0.79236 0.85300 0.80560 1.19255 1.19981 1.15890 0.91530 0.91837 0.92479 0.89745 0.90590 0.90933 0.91221 0.76736 0.83721 0.81612 0.90554 0.89439 0.89505 0.80737 0.76733 0.88564 0.88446 0.91994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.59 9.48 37.16 0.35 -1.24 16 2 C 0.15 1.55 2.58 -67.93 -0.17 1.37 16 3 H 0.09 1.16 7.58 -51.93 -0.39 0.77 16 4 C -0.14 -0.99 4.87 -26.73 -0.13 -1.12 16 5 C 0.12 1.19 5.56 -4.04 -0.02 1.17 16 6 N -0.73 -6.71 5.55 -61.43 -0.34 -7.05 16 7 C 0.59 7.24 7.81 -12.59 -0.10 7.14 16 8 O -0.55 -9.12 16.91 5.26 0.09 -9.03 16 9 C -0.23 -2.32 6.29 -103.35 -0.65 -2.97 16 10 C -0.17 -1.19 10.56 -37.50 -0.40 -1.59 16 11 C -0.02 -0.10 11.34 -16.83 -0.19 -0.29 16 12 N -0.45 -2.70 3.09 -124.53 -0.38 -3.08 16 13 C 0.07 0.15 11.03 59.85 0.66 0.81 16 14 C 0.08 0.65 11.12 -16.84 -0.19 0.46 16 15 N -0.73 -9.18 4.53 -53.81 -0.24 -9.43 16 16 C 0.53 9.53 7.81 -10.99 -0.09 9.44 16 17 O -0.52 -11.22 15.52 5.55 0.09 -11.14 16 18 C -0.12 -2.47 6.16 36.00 0.22 -2.25 16 19 S -0.14 -3.68 18.55 -107.50 -1.99 -5.67 16 20 C -0.52 -15.31 10.04 30.94 0.31 -15.00 16 21 H 0.09 2.69 8.03 -52.49 -0.42 2.27 16 22 C 0.10 2.83 5.50 -17.43 -0.10 2.74 16 23 N -0.88 -27.04 13.97 55.49 0.78 -26.26 16 24 Si 0.86 22.23 27.74 -169.99 -4.71 17.52 16 25 H -0.27 -6.84 7.11 56.52 0.40 -6.43 16 26 H -0.27 -6.86 7.11 56.52 0.40 -6.45 16 27 H -0.23 -6.10 6.74 56.52 0.38 -5.72 16 28 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.07 0.86 7.75 -51.93 -0.40 0.46 16 34 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.40 2.45 7.60 -40.82 -0.31 2.14 16 36 H 0.15 0.67 7.70 -52.49 -0.40 0.26 16 37 H 0.17 0.45 8.06 -52.48 -0.42 0.02 16 38 H 0.08 0.10 8.14 -51.93 -0.42 -0.32 16 39 H 0.09 0.12 8.13 -51.93 -0.42 -0.30 16 40 H 0.09 0.05 8.13 -51.93 -0.42 -0.37 16 41 H 0.18 1.35 8.06 -52.49 -0.42 0.93 16 42 H 0.40 3.97 8.60 -40.82 -0.35 3.62 16 43 H 0.10 1.76 8.14 -51.92 -0.42 1.34 16 44 H 0.10 1.83 8.14 -51.91 -0.42 1.41 16 45 H 0.27 7.70 8.31 -40.82 -0.34 7.36 16 LS Contribution 398.18 15.07 6.00 6.00 Total: -1.00 -39.34 398.18 -8.15 -47.48 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: -6.93 Total: 2.01 kcal Atomic # 6 Polarization: -0.86 SS G_CDS: -0.49 Total: -1.35 kcal Atomic # 7 Polarization: -45.63 SS G_CDS: -0.19 Total: -45.82 kcal Atomic # 8 Polarization: -20.34 SS G_CDS: 0.18 Total: -20.17 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -4.71 Total: 17.52 kcal Atomic # 16 Polarization: -3.68 SS G_CDS: -1.99 Total: -5.67 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -39.34 -8.15 -47.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001704131582.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.383 kcal (2) G-P(sol) polarization free energy of solvation -39.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds