Wall clock time and date at job start Sat Apr 11 2020 05:41:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.47702 * 2 1 4 4 C 1.52995 * 109.47288 * 120.00227 * 2 1 3 5 5 N 1.46507 * 109.47261 * 174.99882 * 4 2 1 6 6 C 1.34770 * 119.99791 * 180.02562 * 5 4 2 7 7 O 1.21285 * 120.00709 * 359.97438 * 6 5 4 8 8 C 1.50707 * 119.99778 * 180.02562 * 6 5 4 9 9 S 1.81001 * 109.47057 * 179.97438 * 8 6 5 10 10 C 1.76200 * 99.99918 * 179.97438 * 9 8 6 11 11 H 1.08005 * 119.99883 * 0.02562 * 10 9 8 12 12 C 1.38798 * 120.00138 * 179.97438 * 10 9 8 13 13 N 1.31632 * 119.99841 * 0.02562 * 12 10 9 14 14 Si 1.86799 * 120.00276 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.47455 * 90.00078 * 14 12 10 16 16 H 1.48495 * 109.47149 * 210.00490 * 14 12 10 17 17 H 1.48507 * 109.46726 * 329.99906 * 14 12 10 18 18 N 1.46906 * 109.47107 * 240.00086 * 2 1 3 19 19 C 1.46903 * 110.99906 * 84.99960 * 18 2 1 20 20 C 1.50694 * 109.46888 * 180.02562 * 19 18 2 21 21 N 1.30258 * 125.61849 * 89.97760 * 20 19 18 22 22 C 1.34485 * 108.70349 * 180.02562 * 21 20 19 23 23 C 1.34334 * 107.66149 * 0.02562 * 22 21 20 24 24 C 1.50703 * 126.43794 * 180.02562 * 23 22 21 25 25 C 1.52996 * 117.49880 * 188.74491 * 24 23 22 26 26 C 1.52998 * 117.49864 * 120.08449 * 24 23 22 27 27 O 1.33971 * 125.62169 * 270.01213 * 20 19 18 28 28 H 1.09004 * 109.46912 * 300.00278 * 1 2 3 29 29 H 1.09006 * 109.47235 * 59.99581 * 1 2 3 30 30 H 1.08992 * 109.47377 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47118 * 294.99558 * 4 2 1 32 32 H 1.09001 * 109.47123 * 54.99923 * 4 2 1 33 33 H 0.96997 * 119.99834 * 359.97438 * 5 4 2 34 34 H 1.09006 * 109.46942 * 299.99702 * 8 6 5 35 35 H 1.08993 * 109.47665 * 59.99709 * 8 6 5 36 36 H 0.97004 * 119.99812 * 179.97438 * 13 12 10 37 37 H 1.00895 * 110.99930 * 208.95320 * 18 2 1 38 38 H 1.09002 * 109.47071 * 60.00161 * 19 18 2 39 39 H 1.09002 * 109.47079 * 300.00244 * 19 18 2 40 40 H 1.07995 * 126.16920 * 179.73871 * 22 21 20 41 41 H 1.09000 * 115.55331 * 334.41889 * 24 23 22 42 42 H 1.09004 * 117.49922 * 0.02562 * 25 24 23 43 43 H 1.08997 * 117.50289 * 145.02007 * 25 24 23 44 44 H 1.08998 * 117.49877 * 214.97791 * 26 24 23 45 45 H 1.09002 * 117.50217 * 359.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5001 -0.8264 1.1905 6 6 4.1730 -1.4292 2.1905 7 8 3.5700 -1.8843 3.1394 8 6 5.6750 -1.5369 2.1304 9 16 6.2783 -2.3903 3.6082 10 6 8.0101 -2.3775 3.2833 11 1 8.3863 -1.9241 2.3781 12 6 8.8908 -2.9490 4.1912 13 7 8.4322 -3.5010 5.2947 14 14 10.7267 -2.9347 3.8472 15 1 11.3279 -1.7027 4.4181 16 1 11.3562 -4.1270 4.4696 17 1 10.9556 -2.9633 2.3801 18 7 2.0196 -0.6925 -1.1995 19 6 2.0824 0.2226 -2.3469 20 6 2.5873 -0.5218 -3.5560 21 7 1.8467 -1.1522 -4.4225 22 6 2.6454 -1.6938 -5.3593 23 6 3.9131 -1.3788 -5.0457 24 6 5.1490 -1.7714 -5.8135 25 6 6.5047 -1.4789 -5.1673 26 6 6.0289 -0.6451 -6.3596 27 8 3.8717 -0.6448 -3.9165 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.7517 -0.1583 2.1369 32 1 1.6054 -1.7198 1.2951 33 1 3.9824 -0.4628 0.4315 34 1 5.9637 -2.0992 1.2423 35 1 6.1094 -0.5383 2.0852 36 1 9.0477 -3.9008 5.9290 37 1 2.9172 -1.1205 -1.0288 38 1 2.7588 1.0462 -2.1182 39 1 1.0870 0.6164 -2.5525 40 1 2.3256 -2.2804 -6.2078 41 1 5.0622 -2.6777 -6.4127 42 1 6.5026 -1.0029 -4.1867 43 1 7.3098 -2.1926 -5.3416 44 1 6.5212 -0.8107 -7.3178 45 1 5.7136 0.3798 -6.1640 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714212409.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:10 Heat of formation + Delta-G solvation = 14.236755 kcal Electronic energy + Delta-G solvation = -25985.360414 eV Core-core repulsion = 22131.820851 eV Total energy + Delta-G solvation = -3853.539563 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.65825 -39.50399 -37.85612 -37.49890 -35.03173 -34.17742 -32.44696 -32.22342 -29.96517 -29.35179 -26.71504 -25.73221 -25.28194 -23.40897 -22.87280 -22.34879 -21.02225 -20.81352 -20.46475 -18.03990 -17.51921 -17.09936 -16.69087 -16.44122 -16.21330 -15.97437 -15.43727 -15.22716 -14.84323 -14.82116 -14.23820 -13.90708 -13.63484 -13.36479 -13.30531 -12.96622 -12.90213 -12.66638 -12.64532 -12.21779 -12.07484 -12.02577 -11.77462 -11.59812 -11.45773 -11.23613 -11.18040 -11.08007 -11.04260 -10.77649 -10.64488 -9.83831 -9.46744 -9.09271 -9.05854 -8.98137 -8.85113 -8.26019 -6.52046 -6.23367 -3.94131 1.02364 2.17196 2.34592 2.97040 3.04308 3.20828 3.25892 3.29657 3.36968 3.52663 3.65308 3.85289 4.04334 4.18506 4.29591 4.40466 4.42696 4.56703 4.71105 4.81116 4.88028 4.99918 5.04399 5.10365 5.11826 5.16025 5.24706 5.38683 5.44644 5.49839 5.53181 5.54185 5.61748 5.63229 5.70918 5.81648 5.85164 5.97025 6.00732 6.09625 6.42938 6.48850 6.80315 7.44308 7.56039 7.58242 8.33306 8.54054 9.21897 10.84068 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.008456 B = 0.002706 C = 0.002098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3310.647451 B =10345.207396 C =13341.472982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.076 3.924 3 H 0.056 0.944 4 C 0.118 3.882 5 N -0.744 5.744 6 C 0.534 3.466 7 O -0.513 6.513 8 C -0.154 4.154 9 S -0.058 6.058 10 C -0.536 4.536 11 H 0.072 0.928 12 C 0.074 3.926 13 N -0.867 5.867 14 Si 0.919 3.081 15 H -0.277 1.277 16 H -0.282 1.282 17 H -0.272 1.272 18 N -0.680 5.680 19 C 0.159 3.841 20 C 0.187 3.813 21 N -0.460 5.460 22 C -0.038 4.038 23 C -0.009 4.009 24 C -0.083 4.083 25 C -0.166 4.166 26 C -0.164 4.164 27 O -0.200 6.200 28 H 0.063 0.937 29 H 0.059 0.941 30 H 0.068 0.932 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.392 0.608 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.269 0.731 37 H 0.349 0.651 38 H 0.062 0.938 39 H 0.117 0.883 40 H 0.184 0.816 41 H 0.140 0.860 42 H 0.102 0.898 43 H 0.107 0.893 44 H 0.107 0.893 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.047 9.414 -23.756 27.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.033 4.033 3 H 0.074 0.926 4 C -0.006 4.006 5 N -0.400 5.400 6 C 0.320 3.680 7 O -0.386 6.386 8 C -0.305 4.305 9 S 0.168 5.832 10 C -0.684 4.684 11 H 0.090 0.910 12 C -0.136 4.136 13 N -0.502 5.502 14 Si 0.745 3.255 15 H -0.203 1.203 16 H -0.207 1.207 17 H -0.197 1.197 18 N -0.316 5.316 19 C 0.029 3.971 20 C -0.020 4.020 21 N -0.189 5.189 22 C -0.177 4.177 23 C -0.062 4.062 24 C -0.102 4.102 25 C -0.203 4.203 26 C -0.201 4.201 27 O -0.087 6.087 28 H 0.082 0.918 29 H 0.078 0.922 30 H 0.087 0.913 31 H 0.095 0.905 32 H 0.096 0.904 33 H 0.226 0.774 34 H 0.108 0.892 35 H 0.107 0.893 36 H 0.078 0.922 37 H 0.170 0.830 38 H 0.080 0.920 39 H 0.135 0.865 40 H 0.201 0.799 41 H 0.157 0.843 42 H 0.121 0.879 43 H 0.126 0.874 44 H 0.125 0.875 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -13.265 8.298 -22.072 27.055 hybrid contribution 3.597 1.129 -1.645 4.113 sum -9.668 9.427 -23.716 27.291 Atomic orbital electron populations 1.21754 0.92851 1.03320 1.01844 1.21828 0.97227 0.96132 0.88117 0.92566 1.21530 0.80404 1.01867 0.96845 1.46060 1.07162 1.62256 1.24500 1.20293 0.89493 0.76654 0.81591 1.90715 1.69863 1.45650 1.32397 1.23541 0.93491 1.05667 1.07804 1.85412 1.04612 1.73122 1.20035 1.22861 0.91511 1.44365 1.09690 0.90957 1.24993 0.99603 0.94518 0.94464 1.70019 1.35421 1.35421 1.09387 0.86167 0.82906 0.77868 0.78555 1.20264 1.20722 1.19699 1.60476 1.34547 1.32683 1.03874 1.20291 1.01855 0.91382 0.83566 1.25970 0.76592 1.00600 0.98821 1.70442 1.34515 1.10592 1.03304 1.23022 0.88508 1.04888 1.01236 1.22407 0.97357 0.98528 0.87949 1.20444 0.86307 1.01316 1.02110 1.23085 0.95640 1.03276 0.98301 1.23112 1.01928 0.96163 0.98922 1.84343 1.31724 1.56586 1.36046 0.91793 0.92168 0.91252 0.90474 0.90383 0.77419 0.89243 0.89272 0.92156 0.83034 0.92026 0.86545 0.79908 0.84267 0.87949 0.87449 0.87502 0.88463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.00 9.41 37.16 0.35 -0.65 16 2 C 0.08 0.61 2.81 -67.71 -0.19 0.42 16 3 H 0.06 0.38 7.80 -51.93 -0.40 -0.02 16 4 C 0.12 1.30 5.31 -4.04 -0.02 1.28 16 5 N -0.74 -9.50 4.99 -60.29 -0.30 -9.80 16 6 C 0.53 9.79 7.85 -10.98 -0.09 9.70 16 7 O -0.51 -11.55 15.86 5.55 0.09 -11.46 16 8 C -0.15 -3.08 6.16 36.01 0.22 -2.86 16 9 S -0.06 -1.58 20.57 -107.50 -2.21 -3.79 16 10 C -0.54 -15.21 9.50 30.94 0.29 -14.92 16 11 H 0.07 1.94 7.80 -52.48 -0.41 1.53 16 12 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 13 N -0.87 -26.11 13.22 55.49 0.73 -25.38 16 14 Si 0.92 21.30 29.55 -169.99 -5.02 16.28 16 15 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 16 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 17 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 18 N -0.68 -6.04 6.29 -107.99 -0.68 -6.71 16 19 C 0.16 1.24 6.11 -4.98 -0.03 1.21 16 20 C 0.19 1.98 7.86 -12.95 -0.10 1.87 16 21 N -0.46 -5.44 11.29 -11.10 -0.13 -5.56 16 22 C -0.04 -0.38 11.80 -17.77 -0.21 -0.59 16 23 C -0.01 -0.09 6.85 -35.68 -0.24 -0.33 16 24 C -0.08 -0.58 6.25 -91.77 -0.57 -1.16 16 25 C -0.17 -1.16 10.18 -26.70 -0.27 -1.43 16 26 C -0.16 -0.98 10.24 -26.69 -0.27 -1.25 16 27 O -0.20 -2.16 10.55 5.37 0.06 -2.11 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.38 7.45 -51.93 -0.39 0.00 16 30 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 33 H 0.39 3.94 7.37 -40.82 -0.30 3.64 16 34 H 0.09 1.65 8.14 -51.91 -0.42 1.23 16 35 H 0.09 1.63 8.14 -51.92 -0.42 1.21 16 36 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 37 H 0.35 3.36 6.70 -39.29 -0.26 3.10 16 38 H 0.06 0.37 8.06 -51.93 -0.42 -0.04 16 39 H 0.12 0.80 7.44 -51.93 -0.39 0.42 16 40 H 0.18 1.31 8.06 -52.49 -0.42 0.88 16 41 H 0.14 0.69 8.14 -51.93 -0.42 0.26 16 42 H 0.10 0.85 8.00 -51.93 -0.42 0.43 16 43 H 0.11 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.11 0.45 8.14 -51.93 -0.42 0.02 16 45 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 397.88 15.07 6.00 6.00 Total: -1.00 -36.02 397.88 -9.47 -45.49 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: -6.77 Total: 3.75 kcal Atomic # 6 Polarization: -5.47 SS G_CDS: -1.23 Total: -6.70 kcal Atomic # 7 Polarization: -47.09 SS G_CDS: -0.37 Total: -47.46 kcal Atomic # 8 Polarization: -13.71 SS G_CDS: 0.14 Total: -13.57 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Atomic # 16 Polarization: -1.58 SS G_CDS: -2.21 Total: -3.79 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -36.02 -9.47 -45.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714212409.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.722 kcal (2) G-P(sol) polarization free energy of solvation -36.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.486 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds