Wall clock time and date at job start Sat Apr 11 2020 05:41:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08992 * 109.46981 * 2 1 4 4 C 1.52998 * 109.46649 * 240.00402 * 2 1 3 5 5 N 1.46499 * 109.46851 * 185.00137 * 4 2 1 6 6 C 1.34783 * 119.99708 * 180.02562 * 5 4 2 7 7 O 1.21280 * 120.00485 * 359.97438 * 6 5 4 8 8 C 1.50707 * 119.99596 * 179.97438 * 6 5 4 9 9 S 1.80998 * 109.46964 * 179.97438 * 8 6 5 10 10 C 1.76199 * 100.00080 * 180.02562 * 9 8 6 11 11 H 1.07997 * 119.99831 * 0.02562 * 10 9 8 12 12 C 1.38799 * 119.99987 * 179.97438 * 10 9 8 13 13 N 1.31627 * 120.00112 * 0.02562 * 12 10 9 14 14 Si 1.86802 * 119.99766 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.47169 * 359.97438 * 14 12 10 16 16 H 1.48496 * 109.47290 * 120.00071 * 14 12 10 17 17 H 1.48504 * 109.46827 * 239.99837 * 14 12 10 18 18 N 1.46900 * 109.47227 * 120.00583 * 2 1 3 19 19 C 1.46899 * 110.99590 * 274.99752 * 18 2 1 20 20 C 1.50699 * 109.46759 * 179.97438 * 19 18 2 21 21 N 1.30260 * 125.61801 * 90.02460 * 20 19 18 22 22 C 1.34485 * 108.69814 * 179.97438 * 21 20 19 23 23 C 1.34330 * 107.66950 * 359.97438 * 22 21 20 24 24 C 1.50704 * 126.44088 * 180.02562 * 23 22 21 25 25 C 1.52998 * 117.49822 * 188.74674 * 24 23 22 26 26 C 1.52997 * 117.49372 * 120.09084 * 24 23 22 27 27 O 1.33967 * 125.62312 * 269.98636 * 20 19 18 28 28 H 1.08998 * 109.47365 * 59.99219 * 1 2 3 29 29 H 1.09004 * 109.47269 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.46747 * 299.99690 * 1 2 3 31 31 H 1.09000 * 109.47492 * 305.00002 * 4 2 1 32 32 H 1.08999 * 109.47289 * 64.99879 * 4 2 1 33 33 H 0.97003 * 120.00452 * 359.97438 * 5 4 2 34 34 H 1.09000 * 109.47204 * 300.00191 * 8 6 5 35 35 H 1.08997 * 109.46744 * 59.99940 * 8 6 5 36 36 H 0.97005 * 120.00115 * 180.02562 * 13 12 10 37 37 H 1.00893 * 110.99775 * 151.04126 * 18 2 1 38 38 H 1.09003 * 109.47199 * 60.00498 * 19 18 2 39 39 H 1.09001 * 109.47137 * 299.99712 * 19 18 2 40 40 H 1.08003 * 126.15957 * 179.97438 * 22 21 20 41 41 H 1.09001 * 115.55152 * 334.42278 * 24 23 22 42 42 H 1.09005 * 117.49789 * 0.02562 * 25 24 23 43 43 H 1.09003 * 117.49758 * 145.02558 * 25 24 23 44 44 H 1.09008 * 117.49811 * 214.98069 * 26 24 23 45 45 H 1.09002 * 117.49992 * 359.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2493 5 7 3.4999 -0.8264 -1.1907 6 6 4.1729 -1.4282 -2.1914 7 8 3.5698 -1.8832 -3.1402 8 6 5.6749 -1.5359 -2.1314 9 16 6.2782 -2.3892 -3.6092 10 6 8.0099 -2.3765 -3.2844 11 1 8.3862 -1.9240 -2.3789 12 6 8.8904 -2.9489 -4.1920 13 7 8.4318 -3.5008 -5.2954 14 14 10.7263 -2.9359 -3.8472 15 1 10.9817 -2.2597 -2.5501 16 1 11.2282 -4.3321 -3.7854 17 1 11.4286 -2.2051 -4.9326 18 7 2.0197 -0.6926 1.1994 19 6 2.0825 0.2224 2.3468 20 6 2.5874 -0.5221 3.5559 21 7 3.8363 -0.6411 3.9066 22 6 3.8996 -1.3708 5.0345 23 6 2.6437 -1.7031 5.3762 24 6 2.2278 -2.5190 6.5731 25 6 0.7624 -2.9502 6.6594 26 6 1.2949 -1.8573 7.5893 27 8 1.8259 -1.1700 4.4475 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.6053 -1.7197 -1.2953 32 1 1.7515 -0.1582 -2.1370 33 1 3.9824 -0.4622 -0.4320 34 1 6.1093 -0.5373 -2.0852 35 1 5.9635 -2.0990 -1.2438 36 1 9.0472 -3.9011 -5.9295 37 1 2.9173 -1.1206 1.0285 38 1 1.0871 0.6161 2.5525 39 1 2.7590 1.0460 2.1182 40 1 4.7983 -1.6409 5.5691 41 1 2.9792 -3.2101 6.9551 42 1 0.0992 -2.6442 5.8502 43 1 0.5496 -3.9249 7.0985 44 1 1.4323 -2.1134 8.6399 45 1 0.9824 -0.8317 7.3924 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714212410.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:12 Heat of formation + Delta-G solvation = 13.797572 kcal Electronic energy + Delta-G solvation = -25746.372913 eV Core-core repulsion = 21892.814306 eV Total energy + Delta-G solvation = -3853.558607 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.65677 -39.47607 -37.87805 -37.52361 -35.04137 -34.14805 -32.41665 -32.21909 -29.95832 -29.32279 -26.73636 -25.71370 -25.26125 -23.46497 -22.94469 -22.29726 -21.01901 -20.83026 -20.42490 -18.05419 -17.55660 -17.11964 -16.68889 -16.26788 -16.15167 -16.12511 -15.35294 -15.02798 -14.79206 -14.78127 -14.64357 -13.98987 -13.63469 -13.36205 -13.14449 -12.94105 -12.82748 -12.72654 -12.63645 -12.23261 -12.12565 -12.05655 -11.74947 -11.60826 -11.49609 -11.26043 -11.23387 -11.05760 -11.00488 -10.74006 -10.69796 -9.79534 -9.43407 -9.08774 -9.06788 -8.95038 -8.85840 -8.22234 -6.48673 -6.20520 -3.90839 1.02067 2.17305 2.33189 3.00500 3.07777 3.22821 3.28828 3.31118 3.33630 3.49932 3.69496 3.87117 4.01624 4.21568 4.24216 4.36305 4.39966 4.58422 4.69358 4.81824 4.87266 4.99690 5.02177 5.08760 5.13782 5.14768 5.17820 5.35892 5.42753 5.46294 5.50523 5.52940 5.55564 5.62891 5.69518 5.81916 5.90090 5.94970 5.99152 6.15368 6.42776 6.52179 6.81752 7.41603 7.60097 7.62187 8.37044 8.57568 9.25064 10.86959 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011425 B = 0.002153 C = 0.001883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2450.123787 B =13001.142705 C =14867.238288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.076 3.924 3 H 0.057 0.943 4 C 0.118 3.882 5 N -0.744 5.744 6 C 0.534 3.466 7 O -0.514 6.514 8 C -0.154 4.154 9 S -0.060 6.060 10 C -0.534 4.534 11 H 0.073 0.927 12 C 0.073 3.927 13 N -0.868 5.868 14 Si 0.919 3.081 15 H -0.272 1.272 16 H -0.280 1.280 17 H -0.280 1.280 18 N -0.683 5.683 19 C 0.155 3.845 20 C 0.193 3.807 21 N -0.473 5.473 22 C -0.034 4.034 23 C -0.013 4.013 24 C -0.081 4.081 25 C -0.167 4.167 26 C -0.165 4.165 27 O -0.191 6.191 28 H 0.064 0.936 29 H 0.068 0.932 30 H 0.058 0.942 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.394 0.606 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.268 0.732 37 H 0.353 0.647 38 H 0.102 0.898 39 H 0.079 0.921 40 H 0.184 0.816 41 H 0.140 0.860 42 H 0.102 0.898 43 H 0.106 0.894 44 H 0.107 0.893 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.347 7.833 25.431 31.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.034 4.034 3 H 0.075 0.925 4 C -0.006 4.006 5 N -0.400 5.400 6 C 0.320 3.680 7 O -0.388 6.388 8 C -0.305 4.305 9 S 0.167 5.833 10 C -0.683 4.683 11 H 0.091 0.909 12 C -0.136 4.136 13 N -0.503 5.503 14 Si 0.745 3.255 15 H -0.196 1.196 16 H -0.206 1.206 17 H -0.206 1.206 18 N -0.320 5.320 19 C 0.026 3.974 20 C -0.014 4.014 21 N -0.203 5.203 22 C -0.173 4.173 23 C -0.067 4.067 24 C -0.100 4.100 25 C -0.204 4.204 26 C -0.202 4.202 27 O -0.077 6.077 28 H 0.083 0.917 29 H 0.087 0.913 30 H 0.077 0.923 31 H 0.095 0.905 32 H 0.095 0.905 33 H 0.228 0.772 34 H 0.108 0.892 35 H 0.108 0.892 36 H 0.078 0.922 37 H 0.175 0.825 38 H 0.121 0.879 39 H 0.096 0.904 40 H 0.202 0.798 41 H 0.157 0.843 42 H 0.120 0.880 43 H 0.124 0.876 44 H 0.125 0.875 45 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -18.494 6.999 23.474 30.693 hybrid contribution 2.502 0.844 1.929 3.270 sum -15.992 7.843 25.403 31.025 Atomic orbital electron populations 1.21759 0.92997 1.03198 1.01824 1.21820 0.97050 0.96292 0.88208 0.92460 1.21513 0.80543 1.01770 0.96791 1.46069 1.07093 1.62261 1.24563 1.20299 0.89512 0.76602 0.81549 1.90708 1.69882 1.45739 1.32458 1.23540 0.93453 1.05715 1.07772 1.85385 1.04666 1.73141 1.20127 1.22911 0.91496 1.44181 1.09665 0.90858 1.24998 0.99614 0.94563 0.94473 1.70028 1.35296 1.35546 1.09428 0.86113 0.82975 0.77992 0.78399 1.19603 1.20560 1.20576 1.60500 1.34969 1.32575 1.03927 1.20274 1.02128 0.91697 0.83343 1.25967 0.84384 0.97195 0.93859 1.70473 1.19232 1.17603 1.12951 1.23001 0.97593 1.01199 0.95474 1.22395 0.89385 1.01690 0.93182 1.20427 0.95578 1.01304 0.92657 1.23067 0.94622 0.99983 1.02730 1.23116 1.02036 0.98687 0.96339 1.84346 1.39398 1.53165 1.30835 0.91729 0.91336 0.92315 0.90469 0.90505 0.77210 0.89214 0.89154 0.92249 0.82535 0.87949 0.90364 0.79848 0.84263 0.87998 0.87594 0.87510 0.88436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.95 9.41 37.16 0.35 -0.60 16 2 C 0.08 0.60 2.81 -67.71 -0.19 0.41 16 3 H 0.06 0.40 7.80 -51.93 -0.40 -0.01 16 4 C 0.12 1.32 5.31 -4.04 -0.02 1.30 16 5 N -0.74 -9.81 4.99 -60.29 -0.30 -10.11 16 6 C 0.53 10.00 7.85 -10.98 -0.09 9.92 16 7 O -0.51 -11.71 15.86 5.56 0.09 -11.63 16 8 C -0.15 -3.15 6.16 36.01 0.22 -2.93 16 9 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 10 C -0.53 -15.39 9.50 30.94 0.29 -15.09 16 11 H 0.07 2.01 7.80 -52.49 -0.41 1.60 16 12 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 13 N -0.87 -26.37 13.22 55.49 0.73 -25.63 16 14 Si 0.92 21.65 29.55 -169.99 -5.02 16.62 16 15 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 16 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 17 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 18 N -0.68 -6.07 6.29 -107.99 -0.68 -6.74 16 19 C 0.16 1.21 6.11 -4.98 -0.03 1.18 16 20 C 0.19 2.03 7.86 -12.94 -0.10 1.93 16 21 N -0.47 -5.62 11.30 -11.10 -0.13 -5.75 16 22 C -0.03 -0.34 11.80 -17.77 -0.21 -0.55 16 23 C -0.01 -0.12 6.85 -35.69 -0.24 -0.37 16 24 C -0.08 -0.52 6.25 -91.77 -0.57 -1.09 16 25 C -0.17 -0.95 10.18 -26.70 -0.27 -1.22 16 26 C -0.16 -0.84 10.24 -26.70 -0.27 -1.11 16 27 O -0.19 -2.05 10.55 5.38 0.06 -1.99 16 28 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.34 7.45 -51.93 -0.39 -0.04 16 31 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 32 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 33 H 0.39 4.24 7.37 -40.82 -0.30 3.93 16 34 H 0.09 1.69 8.14 -51.92 -0.42 1.27 16 35 H 0.09 1.73 8.14 -51.92 -0.42 1.31 16 36 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 37 H 0.35 3.59 6.70 -39.30 -0.26 3.32 16 38 H 0.10 0.63 7.44 -51.93 -0.39 0.24 16 39 H 0.08 0.53 8.06 -51.93 -0.42 0.11 16 40 H 0.18 1.39 8.06 -52.48 -0.42 0.97 16 41 H 0.14 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.10 0.69 8.00 -51.93 -0.42 0.28 16 43 H 0.11 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.11 0.35 8.14 -51.92 -0.42 -0.07 16 45 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 LS Contribution 397.88 15.07 6.00 6.00 Total: -1.00 -36.27 397.88 -9.47 -45.74 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: -6.77 Total: 3.58 kcal Atomic # 6 Polarization: -5.01 SS G_CDS: -1.23 Total: -6.24 kcal Atomic # 7 Polarization: -47.86 SS G_CDS: -0.37 Total: -48.23 kcal Atomic # 8 Polarization: -13.76 SS G_CDS: 0.14 Total: -13.61 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.62 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -36.27 -9.47 -45.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714212410.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.536 kcal (2) G-P(sol) polarization free energy of solvation -36.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.739 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds