Wall clock time and date at job start Sat Apr 11 2020 05:41:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08992 * 109.46981 * 2 1 4 4 C 1.52998 * 109.46649 * 240.00402 * 2 1 3 5 5 N 1.46499 * 109.46851 * 185.00137 * 4 2 1 6 6 C 1.34783 * 119.99708 * 180.02562 * 5 4 2 7 7 O 1.21280 * 120.00485 * 359.97438 * 6 5 4 8 8 C 1.50707 * 119.99596 * 179.97438 * 6 5 4 9 9 S 1.80998 * 109.46964 * 179.97438 * 8 6 5 10 10 C 1.76199 * 100.00080 * 180.02562 * 9 8 6 11 11 H 1.07997 * 119.99831 * 0.02562 * 10 9 8 12 12 C 1.38799 * 119.99987 * 179.97438 * 10 9 8 13 13 N 1.31627 * 120.00112 * 0.02562 * 12 10 9 14 14 Si 1.86802 * 119.99766 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.47169 * 359.97438 * 14 12 10 16 16 H 1.48496 * 109.47290 * 120.00071 * 14 12 10 17 17 H 1.48504 * 109.46827 * 239.99837 * 14 12 10 18 18 N 1.46900 * 109.47227 * 120.00583 * 2 1 3 19 19 C 1.46899 * 110.99590 * 274.99752 * 18 2 1 20 20 C 1.50699 * 109.46759 * 179.97438 * 19 18 2 21 21 N 1.30260 * 125.61801 * 90.02460 * 20 19 18 22 22 C 1.34485 * 108.69814 * 179.97438 * 21 20 19 23 23 C 1.34330 * 107.66950 * 359.97438 * 22 21 20 24 24 C 1.50704 * 126.44088 * 180.02562 * 23 22 21 25 25 C 1.52998 * 117.49822 * 188.74674 * 24 23 22 26 26 C 1.52997 * 117.49372 * 120.09084 * 24 23 22 27 27 O 1.33967 * 125.62312 * 269.98636 * 20 19 18 28 28 H 1.08998 * 109.47365 * 59.99219 * 1 2 3 29 29 H 1.09004 * 109.47269 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.46747 * 299.99690 * 1 2 3 31 31 H 1.09000 * 109.47492 * 305.00002 * 4 2 1 32 32 H 1.08999 * 109.47289 * 64.99879 * 4 2 1 33 33 H 0.97003 * 120.00452 * 359.97438 * 5 4 2 34 34 H 1.09000 * 109.47204 * 300.00191 * 8 6 5 35 35 H 1.08997 * 109.46744 * 59.99940 * 8 6 5 36 36 H 0.97005 * 120.00115 * 180.02562 * 13 12 10 37 37 H 1.00893 * 110.99775 * 151.04126 * 18 2 1 38 38 H 1.09003 * 109.47199 * 60.00498 * 19 18 2 39 39 H 1.09001 * 109.47137 * 299.99712 * 19 18 2 40 40 H 1.08003 * 126.15957 * 179.97438 * 22 21 20 41 41 H 1.09001 * 115.55152 * 334.42278 * 24 23 22 42 42 H 1.09005 * 117.49789 * 0.02562 * 25 24 23 43 43 H 1.09003 * 117.49758 * 145.02558 * 25 24 23 44 44 H 1.09008 * 117.49811 * 214.98069 * 26 24 23 45 45 H 1.09002 * 117.49992 * 359.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2493 5 7 3.4999 -0.8264 -1.1907 6 6 4.1729 -1.4282 -2.1914 7 8 3.5698 -1.8832 -3.1402 8 6 5.6749 -1.5359 -2.1314 9 16 6.2782 -2.3892 -3.6092 10 6 8.0099 -2.3765 -3.2844 11 1 8.3862 -1.9240 -2.3789 12 6 8.8904 -2.9489 -4.1920 13 7 8.4318 -3.5008 -5.2954 14 14 10.7263 -2.9359 -3.8472 15 1 10.9817 -2.2597 -2.5501 16 1 11.2282 -4.3321 -3.7854 17 1 11.4286 -2.2051 -4.9326 18 7 2.0197 -0.6926 1.1994 19 6 2.0825 0.2224 2.3468 20 6 2.5874 -0.5221 3.5559 21 7 3.8363 -0.6411 3.9066 22 6 3.8996 -1.3708 5.0345 23 6 2.6437 -1.7031 5.3762 24 6 2.2278 -2.5190 6.5731 25 6 0.7624 -2.9502 6.6594 26 6 1.2949 -1.8573 7.5893 27 8 1.8259 -1.1700 4.4475 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.6053 -1.7197 -1.2953 32 1 1.7515 -0.1582 -2.1370 33 1 3.9824 -0.4622 -0.4320 34 1 6.1093 -0.5373 -2.0852 35 1 5.9635 -2.0990 -1.2438 36 1 9.0472 -3.9011 -5.9295 37 1 2.9173 -1.1206 1.0285 38 1 1.0871 0.6161 2.5525 39 1 2.7590 1.0460 2.1182 40 1 4.7983 -1.6409 5.5691 41 1 2.9792 -3.2101 6.9551 42 1 0.0992 -2.6442 5.8502 43 1 0.5496 -3.9249 7.0985 44 1 1.4323 -2.1134 8.6399 45 1 0.9824 -0.8317 7.3924 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714212410.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:12 Heat of formation + Delta-G solvation = -14.213687 kcal Electronic energy + Delta-G solvation = -25747.587572 eV Core-core repulsion = 21892.814306 eV Total energy + Delta-G solvation = -3854.773266 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -44.38933 -40.80201 -38.69582 -38.10377 -35.82790 -35.26127 -34.59494 -33.08581 -31.04576 -30.39699 -27.76894 -27.37759 -26.41202 -24.11168 -23.38013 -22.94578 -21.85672 -21.73547 -21.49191 -19.89191 -18.49039 -17.88948 -17.80185 -17.41426 -17.02881 -16.94388 -16.88935 -16.31650 -16.02523 -15.83894 -15.57428 -15.29344 -14.71821 -14.50839 -14.27872 -14.19356 -13.79787 -13.44638 -13.33572 -13.24403 -13.17281 -12.97020 -12.91400 -12.68794 -12.58473 -12.50018 -12.37918 -12.03400 -11.93599 -11.83685 -11.70905 -11.29956 -11.16846 -11.01206 -10.29422 -10.20454 -9.73756 -9.52479 -8.67867 -8.35917 -6.13882 0.31188 1.25335 1.40530 1.45362 1.49588 1.56704 1.57368 1.61585 2.20843 2.26632 2.83648 2.87531 2.98176 3.18211 3.30564 3.47474 3.63306 3.78413 3.91863 3.94715 4.02484 4.09661 4.14920 4.25883 4.28822 4.36531 4.43319 4.48410 4.61411 4.69171 4.71480 4.76906 4.83136 4.91031 4.99512 5.01540 5.11499 5.16066 5.26876 5.30219 5.41220 5.44748 5.79017 6.05758 6.19075 6.36894 6.67097 7.05514 7.16607 8.73542 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011425 B = 0.002153 C = 0.001883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2450.123787 B =13001.142705 C =14867.238288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.088 3.912 3 H 0.079 0.921 4 C 0.117 3.883 5 N -0.717 5.717 6 C 0.537 3.463 7 O -0.561 6.561 8 C -0.131 4.131 9 S -0.148 6.148 10 C -0.546 4.546 11 H 0.081 0.919 12 C 0.013 3.987 13 N -0.910 5.910 14 Si 0.999 3.001 15 H -0.258 1.258 16 H -0.273 1.273 17 H -0.273 1.273 18 N -0.692 5.692 19 C 0.157 3.843 20 C 0.184 3.816 21 N -0.501 5.501 22 C -0.056 4.056 23 C -0.015 4.015 24 C -0.094 4.094 25 C -0.169 4.169 26 C -0.153 4.153 27 O -0.203 6.203 28 H 0.074 0.926 29 H 0.055 0.945 30 H 0.073 0.927 31 H 0.061 0.939 32 H 0.077 0.923 33 H 0.410 0.590 34 H 0.110 0.890 35 H 0.106 0.894 36 H 0.271 0.729 37 H 0.344 0.656 38 H 0.122 0.878 39 H 0.092 0.908 40 H 0.202 0.798 41 H 0.159 0.841 42 H 0.086 0.914 43 H 0.124 0.876 44 H 0.129 0.871 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.195 9.020 28.056 34.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.022 4.022 3 H 0.097 0.903 4 C -0.007 4.007 5 N -0.372 5.372 6 C 0.322 3.678 7 O -0.439 6.439 8 C -0.283 4.283 9 S 0.079 5.921 10 C -0.694 4.694 11 H 0.100 0.900 12 C -0.192 4.192 13 N -0.547 5.547 14 Si 0.821 3.179 15 H -0.182 1.182 16 H -0.199 1.199 17 H -0.198 1.198 18 N -0.328 5.328 19 C 0.028 3.972 20 C -0.023 4.023 21 N -0.231 5.231 22 C -0.194 4.194 23 C -0.068 4.068 24 C -0.112 4.112 25 C -0.206 4.206 26 C -0.190 4.190 27 O -0.090 6.090 28 H 0.093 0.907 29 H 0.074 0.926 30 H 0.092 0.908 31 H 0.080 0.920 32 H 0.095 0.905 33 H 0.246 0.754 34 H 0.128 0.872 35 H 0.124 0.876 36 H 0.080 0.920 37 H 0.164 0.836 38 H 0.140 0.860 39 H 0.110 0.890 40 H 0.218 0.782 41 H 0.177 0.823 42 H 0.105 0.895 43 H 0.142 0.858 44 H 0.148 0.852 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -18.368 8.222 26.157 33.003 hybrid contribution 2.331 0.508 1.215 2.678 sum -16.037 8.730 27.373 32.904 Atomic orbital electron populations 1.21758 0.91853 1.02813 1.03101 1.21779 0.97718 0.96536 0.86118 0.90338 1.21671 0.78679 1.01508 0.98803 1.45791 1.08093 1.60026 1.23266 1.20007 0.88821 0.76860 0.82062 1.90697 1.70394 1.48205 1.34621 1.23382 0.94830 1.05815 1.04236 1.85541 1.05852 1.75115 1.25575 1.23229 0.91683 1.44375 1.10100 0.90040 1.26135 1.05249 0.93802 0.94033 1.70186 1.37340 1.36529 1.10641 0.84901 0.75864 0.78331 0.78820 1.18157 1.19874 1.19801 1.60518 1.34440 1.33326 1.04511 1.20442 1.03495 0.91292 0.81930 1.26488 0.84220 0.97202 0.94410 1.70444 1.20120 1.18601 1.13937 1.23388 0.98721 1.01694 0.95619 1.22973 0.89214 1.01141 0.93450 1.20698 0.96535 1.01861 0.92148 1.23120 0.93739 1.01132 1.02640 1.23188 1.00566 0.98064 0.97195 1.84352 1.39934 1.53428 1.31268 0.90733 0.92590 0.90758 0.92020 0.90464 0.75359 0.87194 0.87552 0.91958 0.83577 0.86036 0.88990 0.78155 0.82308 0.89529 0.85829 0.85247 0.89303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 9.41 71.98 0.68 -0.89 16 2 C 0.09 1.20 2.81 44.92 0.13 1.32 16 3 H 0.08 0.81 7.80 -2.39 -0.02 0.79 16 4 C 0.12 2.49 5.31 86.38 0.46 2.94 16 5 N -0.72 -17.95 4.99 -463.05 -2.31 -20.26 16 6 C 0.54 19.97 7.85 87.66 0.69 20.66 16 7 O -0.56 -26.16 15.86 -3.03 -0.05 -26.21 16 8 C -0.13 -5.32 6.16 71.24 0.44 -4.88 16 9 S -0.15 -8.33 20.57 -56.49 -1.16 -9.49 16 10 C -0.55 -31.63 9.50 67.95 0.65 -30.99 16 11 H 0.08 4.41 7.80 -2.91 -0.02 4.39 16 12 C 0.01 0.72 5.49 84.86 0.47 1.19 16 13 N -0.91 -56.41 13.22 21.65 0.29 -56.13 16 14 Si 1.00 44.19 29.55 68.60 2.03 46.22 16 15 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 16 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 17 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 18 N -0.69 -11.07 6.29 -495.58 -3.12 -14.19 16 19 C 0.16 2.13 6.11 85.56 0.52 2.66 16 20 C 0.18 3.69 7.86 88.34 0.69 4.39 16 21 N -0.50 -11.60 11.30 -303.82 -3.43 -15.03 16 22 C -0.06 -1.11 11.80 83.39 0.98 -0.13 16 23 C -0.01 -0.26 6.85 24.79 0.17 -0.09 16 24 C -0.09 -1.07 6.25 -11.54 -0.07 -1.14 16 25 C -0.17 -1.69 10.18 30.62 0.31 -1.37 16 26 C -0.15 -1.28 10.24 30.62 0.31 -0.97 16 27 O -0.20 -4.23 10.55 -3.68 -0.04 -4.27 16 28 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.05 0.80 8.14 -2.38 -0.02 0.78 16 30 H 0.07 0.65 7.45 -2.39 -0.02 0.63 16 31 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.41 7.92 7.37 -92.71 -0.68 7.24 16 34 H 0.11 4.00 8.14 -2.39 -0.02 3.98 16 35 H 0.11 3.96 8.14 -2.40 -0.02 3.94 16 36 H 0.27 15.54 8.31 -92.70 -0.77 14.77 16 37 H 0.34 6.49 6.70 -89.70 -0.60 5.89 16 38 H 0.12 1.16 7.44 -2.39 -0.02 1.14 16 39 H 0.09 1.00 8.06 -2.39 -0.02 0.98 16 40 H 0.20 2.90 8.06 -2.91 -0.02 2.88 16 41 H 0.16 1.10 8.14 -2.39 -0.02 1.08 16 42 H 0.09 1.13 8.00 -2.38 -0.02 1.11 16 43 H 0.12 0.77 8.14 -2.39 -0.02 0.75 16 44 H 0.13 0.50 8.14 -2.38 -0.02 0.48 16 45 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 Total: -1.00 -81.37 397.88 -1.64 -83.01 By element: Atomic # 1 Polarization: 23.91 SS G_CDS: -0.27 Total: 23.64 kcal Atomic # 6 Polarization: -13.72 SS G_CDS: 6.42 Total: -7.29 kcal Atomic # 7 Polarization: -97.03 SS G_CDS: -8.57 Total: -105.61 kcal Atomic # 8 Polarization: -30.40 SS G_CDS: -0.09 Total: -30.48 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.22 kcal Atomic # 16 Polarization: -8.33 SS G_CDS: -1.16 Total: -9.49 kcal Total: -81.37 -1.64 -83.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714212410.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.797 kcal (2) G-P(sol) polarization free energy of solvation -81.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds