Wall clock time and date at job start Sat Apr 11 2020 05:41:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.08999 * 109.47253 * 2 1 4 4 C 1.52996 * 109.47547 * 239.99515 * 2 1 3 5 5 N 1.46901 * 109.47219 * 64.99757 * 4 2 1 6 6 C 1.46898 * 111.00231 * 180.02562 * 5 4 2 7 7 C 1.50706 * 109.46875 * 180.02562 * 6 5 4 8 8 O 1.21285 * 119.99955 * 0.02562 * 7 6 5 9 9 N 1.34781 * 119.99471 * 179.97438 * 7 6 5 10 10 C 1.37095 * 119.99484 * 179.97438 * 9 7 6 11 11 H 1.08002 * 120.00261 * 0.02562 * 10 9 7 12 12 C 1.38956 * 119.99799 * 179.97438 * 10 9 7 13 13 N 1.31406 * 119.99754 * 180.02562 * 12 10 9 14 14 Si 1.86802 * 120.00026 * 0.02562 * 12 10 9 15 15 H 1.48500 * 109.47311 * 89.99372 * 14 12 10 16 16 H 1.48492 * 109.47108 * 209.99818 * 14 12 10 17 17 H 1.48509 * 109.46792 * 329.99540 * 14 12 10 18 18 C 1.53006 * 109.47117 * 119.99398 * 2 1 3 19 19 N 1.46496 * 109.47242 * 295.00161 * 18 2 1 20 20 C 1.34772 * 120.00214 * 179.97438 * 19 18 2 21 21 O 1.21281 * 119.99940 * 359.97438 * 20 19 18 22 22 C 1.50703 * 120.00069 * 180.02562 * 20 19 18 23 23 C 1.50706 * 109.47001 * 179.97438 * 22 20 19 24 24 C 1.33391 * 125.19937 * 90.00039 * 23 22 20 25 25 C 1.38423 * 114.92045 * 179.97438 * 24 23 22 26 26 C 1.33390 * 114.91979 * 359.97438 * 25 24 23 27 27 S 1.75878 * 125.20693 * 269.69299 * 23 22 20 28 28 H 1.09002 * 109.47374 * 60.00630 * 1 2 3 29 29 H 1.08999 * 109.47253 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47683 * 300.00788 * 1 2 3 31 31 H 1.08999 * 109.47558 * 184.99952 * 4 2 1 32 32 H 1.09005 * 109.46998 * 305.00463 * 4 2 1 33 33 H 1.00906 * 110.99817 * 56.04862 * 5 4 2 34 34 H 1.09002 * 109.47102 * 300.00095 * 6 5 4 35 35 H 1.09002 * 109.47050 * 60.00354 * 6 5 4 36 36 H 0.96996 * 119.99847 * 0.02562 * 9 7 6 37 37 H 0.97003 * 119.99929 * 180.02562 * 13 12 10 38 38 H 1.08997 * 109.47040 * 174.99818 * 18 2 1 39 39 H 1.09000 * 109.46833 * 54.99918 * 18 2 1 40 40 H 0.97000 * 119.99972 * 359.97438 * 19 18 2 41 41 H 1.09000 * 109.46978 * 60.00374 * 22 20 19 42 42 H 1.09000 * 109.46976 * 299.99619 * 22 20 19 43 43 H 1.07995 * 122.54106 * 359.95411 * 24 23 22 44 44 H 1.08001 * 122.53959 * 180.02562 * 25 24 23 45 45 H 1.07998 * 125.20163 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2491 5 7 1.6514 0.0372 -2.4456 6 6 2.1248 -0.6274 -3.6671 7 6 1.7088 0.1783 -4.8708 8 8 1.0803 1.2054 -4.7253 9 7 2.0362 -0.2419 -6.1089 10 6 1.6573 0.4908 -7.2039 11 1 1.0969 1.4049 -7.0745 12 6 1.9952 0.0578 -8.4803 13 7 1.6325 0.7604 -9.5299 14 14 2.9652 -1.5229 -8.7042 15 1 2.0260 -2.6657 -8.8345 16 1 3.7973 -1.4236 -9.9301 17 1 3.8434 -1.7358 -7.5257 18 6 2.0399 -0.7211 1.2494 19 7 1.6524 0.0355 2.4424 20 6 1.9954 -0.4133 3.6660 21 8 2.6247 -1.4439 3.7795 22 6 1.5962 0.3648 4.8933 23 6 2.0976 -0.3461 6.1239 24 6 3.2850 -0.1455 6.6977 25 6 3.5268 -0.9152 7.8225 26 6 2.5356 -1.7405 8.1624 27 16 1.2037 -1.5616 7.0277 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5140 0.8899 31 1 3.1263 -0.7995 -1.2055 32 1 1.6053 -1.7199 -1.2950 33 1 1.9882 0.9871 -2.3967 34 1 3.2117 -0.7053 -3.6404 35 1 1.6904 -1.6252 -3.7295 36 1 2.5392 -1.0631 -6.2251 37 1 1.8681 0.4580 -10.4210 38 1 3.1262 -0.7994 1.2057 39 1 1.6053 -1.7197 1.2953 40 1 1.1488 0.8596 2.3517 41 1 0.5099 0.4429 4.9366 42 1 2.0309 1.3634 4.8477 43 1 4.0034 0.5635 6.3136 44 1 4.4479 -0.8517 8.3828 45 1 2.5474 -2.4129 9.0075 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714369786.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:15 Heat of formation + Delta-G solvation = -42.113750 kcal Electronic energy + Delta-G solvation = -25195.225526 eV Core-core repulsion = 21339.242423 eV Total energy + Delta-G solvation = -3855.983104 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.17419 -38.59194 -38.08652 -37.23655 -34.98320 -33.93163 -32.92162 -32.09501 -31.63883 -28.04854 -27.54646 -26.42485 -24.80253 -23.65708 -22.89110 -21.00900 -20.57237 -19.61382 -19.35735 -18.34890 -17.68779 -17.35573 -16.39342 -16.12360 -15.95803 -15.63706 -15.46773 -15.02730 -14.70333 -14.53481 -14.09824 -13.69465 -13.63087 -13.36644 -13.19509 -13.04635 -12.95452 -12.77923 -12.66657 -12.58164 -12.10828 -12.06557 -11.93271 -11.81072 -11.26186 -11.14103 -11.10037 -11.09641 -10.95191 -10.60428 -10.25239 -9.98679 -9.58404 -9.38520 -9.02328 -8.77731 -8.61040 -8.20890 -8.15440 -6.32251 -3.83725 0.62389 1.28473 1.65361 2.30449 2.36588 2.90423 3.01766 3.06402 3.14540 3.72840 4.05196 4.09975 4.15401 4.47823 4.61408 4.65305 4.71619 4.73252 4.80815 4.91165 4.98592 5.20364 5.21077 5.22771 5.26421 5.38351 5.52401 5.59519 5.60560 5.73876 5.76075 5.79725 5.82497 5.92076 5.92384 6.00968 6.12075 6.15592 6.33698 7.05126 7.13376 7.53629 7.57278 7.88408 8.13254 8.58600 8.93759 9.41340 9.81431 10.80847 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.038169 B = 0.001402 C = 0.001381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.395780 B =19967.944213 C =20269.366553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.100 4.100 3 H 0.077 0.923 4 C 0.066 3.934 5 N -0.666 5.666 6 C 0.048 3.952 7 C 0.450 3.550 8 O -0.565 6.565 9 N -0.591 5.591 10 C -0.306 4.306 11 H 0.120 0.880 12 C 0.042 3.958 13 N -0.881 5.881 14 Si 0.880 3.120 15 H -0.270 1.270 16 H -0.277 1.277 17 H -0.270 1.270 18 C 0.125 3.875 19 N -0.727 5.727 20 C 0.511 3.489 21 O -0.528 6.528 22 C -0.071 4.071 23 C -0.159 4.159 24 C -0.128 4.128 25 C -0.133 4.133 26 C -0.214 4.214 27 S 0.108 5.892 28 H 0.077 0.923 29 H 0.053 0.947 30 H 0.044 0.956 31 H 0.029 0.971 32 H 0.075 0.925 33 H 0.350 0.650 34 H 0.044 0.956 35 H 0.087 0.913 36 H 0.371 0.629 37 H 0.273 0.727 38 H 0.067 0.933 39 H 0.070 0.930 40 H 0.402 0.598 41 H 0.105 0.895 42 H 0.113 0.887 43 H 0.138 0.862 44 H 0.139 0.861 45 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.200 -3.992 34.108 34.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.119 4.119 3 H 0.096 0.904 4 C -0.064 4.064 5 N -0.298 5.298 6 C -0.085 4.085 7 C 0.236 3.764 8 O -0.447 6.447 9 N -0.230 5.230 10 C -0.435 4.435 11 H 0.137 0.863 12 C -0.161 4.161 13 N -0.521 5.521 14 Si 0.706 3.294 15 H -0.196 1.196 16 H -0.202 1.202 17 H -0.195 1.195 18 C 0.001 3.999 19 N -0.380 5.380 20 C 0.296 3.704 21 O -0.404 6.404 22 C -0.113 4.113 23 C -0.277 4.277 24 C -0.158 4.158 25 C -0.164 4.164 26 C -0.350 4.350 27 S 0.371 5.629 28 H 0.096 0.904 29 H 0.072 0.928 30 H 0.064 0.936 31 H 0.048 0.952 32 H 0.093 0.907 33 H 0.169 0.831 34 H 0.062 0.938 35 H 0.106 0.894 36 H 0.203 0.797 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.088 0.912 40 H 0.237 0.763 41 H 0.123 0.877 42 H 0.131 0.869 43 H 0.155 0.845 44 H 0.157 0.843 45 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 0.175 -4.979 33.865 34.229 hybrid contribution 2.979 -0.122 -0.302 2.997 sum 3.155 -5.101 33.562 34.094 Atomic orbital electron populations 1.21762 0.93647 1.02202 1.02170 1.21341 0.97681 0.99975 0.92892 0.90440 1.21900 0.97359 0.97980 0.89198 1.60025 1.64172 1.05919 0.99700 1.21703 0.97839 0.98707 0.90227 1.19707 0.85216 0.87882 0.83631 1.90558 1.42886 1.25847 1.85427 1.42209 1.50978 1.23801 1.06013 1.19436 1.33586 1.07765 0.82670 0.86283 1.25036 0.97840 0.98074 0.95156 1.69622 1.45706 1.38405 0.98376 0.86670 0.80434 0.83709 0.78554 1.19585 1.20187 1.19539 1.21396 1.00010 0.95455 0.83072 1.45989 1.58221 1.28060 1.05731 1.20468 0.79705 0.85907 0.84317 1.90749 1.39053 1.24035 1.86525 1.20161 1.03137 0.99354 0.88673 1.23767 0.99288 1.03363 1.01294 1.20070 0.96503 1.02401 0.96853 1.20133 1.00310 0.97674 0.98278 1.25608 0.98010 1.06382 1.04968 1.84237 1.19170 1.38145 1.21308 0.90365 0.92787 0.93647 0.95242 0.90701 0.83060 0.93763 0.89445 0.79677 0.91609 0.91497 0.91199 0.76342 0.87684 0.86878 0.84460 0.84302 0.81932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.28 8.95 37.15 0.33 -0.95 16 2 C -0.10 -0.86 2.57 -90.62 -0.23 -1.09 16 3 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 4 C 0.07 0.70 5.07 -3.83 -0.02 0.68 16 5 N -0.67 -9.56 5.58 -115.05 -0.64 -10.20 16 6 C 0.05 0.77 6.17 -4.97 -0.03 0.74 16 7 C 0.45 10.04 7.82 -10.98 -0.09 9.96 16 8 O -0.57 -14.92 15.78 5.55 0.09 -14.83 16 9 N -0.59 -13.96 5.09 -10.96 -0.06 -14.01 16 10 C -0.31 -8.62 10.16 -14.93 -0.15 -8.77 16 11 H 0.12 3.83 7.39 -52.49 -0.39 3.45 16 12 C 0.04 1.14 5.50 -17.47 -0.10 1.05 16 13 N -0.88 -25.65 13.96 55.50 0.77 -24.87 16 14 Si 0.88 19.29 27.74 -169.99 -4.71 14.58 16 15 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 16 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 17 H -0.27 -5.39 6.52 56.52 0.37 -5.02 16 18 C 0.12 1.07 5.06 -4.04 -0.02 1.04 16 19 N -0.73 -5.26 5.28 -60.30 -0.32 -5.58 16 20 C 0.51 4.62 7.82 -10.99 -0.09 4.54 16 21 O -0.53 -7.11 16.03 5.56 0.09 -7.02 16 22 C -0.07 -0.43 6.20 -29.03 -0.18 -0.61 16 23 C -0.16 -1.30 5.00 -36.00 -0.18 -1.48 16 24 C -0.13 -1.02 10.05 -41.21 -0.41 -1.44 16 25 C -0.13 -0.99 10.18 -41.21 -0.42 -1.41 16 26 C -0.21 -1.56 11.23 29.04 0.33 -1.24 16 27 S 0.11 0.87 23.33 -107.50 -2.51 -1.64 16 28 H 0.08 0.90 7.75 -51.93 -0.40 0.50 16 29 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.04 0.33 7.18 -51.93 -0.37 -0.05 16 31 H 0.03 0.30 8.14 -51.93 -0.42 -0.13 16 32 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.35 5.20 8.43 -39.29 -0.33 4.87 16 34 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 36 H 0.37 7.68 5.76 -40.82 -0.24 7.45 16 37 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 38 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.40 1.90 7.66 -40.82 -0.31 1.58 16 41 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.11 0.41 8.14 -51.93 -0.42 -0.02 16 43 H 0.14 0.90 8.06 -52.49 -0.42 0.48 16 44 H 0.14 0.75 8.06 -52.49 -0.42 0.33 16 45 H 0.16 0.82 8.06 -52.49 -0.42 0.39 16 LS Contribution 393.37 15.07 5.93 5.93 Total: -1.00 -35.41 393.37 -9.32 -44.74 By element: Atomic # 1 Polarization: 18.61 SS G_CDS: -6.71 Total: 11.91 kcal Atomic # 6 Polarization: 2.27 SS G_CDS: -1.26 Total: 1.01 kcal Atomic # 7 Polarization: -54.42 SS G_CDS: -0.24 Total: -54.66 kcal Atomic # 8 Polarization: -22.03 SS G_CDS: 0.18 Total: -21.86 kcal Atomic # 14 Polarization: 19.29 SS G_CDS: -4.71 Total: 14.58 kcal Atomic # 16 Polarization: 0.87 SS G_CDS: -2.51 Total: -1.64 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -35.41 -9.32 -44.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714369786.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.624 kcal (2) G-P(sol) polarization free energy of solvation -35.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds