Wall clock time and date at job start Sat Apr 11 2020 05:41:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.47066 * 2 1 4 4 C 1.53006 * 109.47002 * 119.99631 * 2 1 3 5 5 N 1.46898 * 109.47138 * 295.00272 * 4 2 1 6 6 C 1.46906 * 110.99888 * 180.02562 * 5 4 2 7 7 C 1.50699 * 109.47140 * 179.97438 * 6 5 4 8 8 O 1.21289 * 119.99678 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99614 * 180.02562 * 7 6 5 10 10 C 1.37097 * 119.99518 * 180.02562 * 9 7 6 11 11 H 1.07996 * 120.00466 * 359.97438 * 10 9 7 12 12 C 1.38949 * 120.00085 * 179.97438 * 10 9 7 13 13 N 1.31416 * 119.99807 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 120.00303 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.46948 * 0.02562 * 14 12 10 16 16 H 1.48500 * 109.46809 * 120.00147 * 14 12 10 17 17 H 1.48497 * 109.47378 * 239.99941 * 14 12 10 18 18 C 1.52993 * 109.47412 * 239.99914 * 2 1 3 19 19 N 1.46497 * 109.47162 * 64.99947 * 18 2 1 20 20 C 1.34781 * 120.00055 * 180.02562 * 19 18 2 21 21 O 1.21277 * 120.00228 * 359.97438 * 20 19 18 22 22 C 1.50704 * 119.99940 * 179.97438 * 20 19 18 23 23 C 1.50699 * 109.47097 * 180.02562 * 22 20 19 24 24 C 1.33380 * 125.20270 * 89.99862 * 23 22 20 25 25 C 1.38424 * 114.92151 * 179.97438 * 24 23 22 26 26 C 1.33388 * 114.92010 * 0.02562 * 25 24 23 27 27 S 1.75882 * 109.59263 * 359.75892 * 26 25 24 28 28 H 1.09000 * 109.46646 * 60.00270 * 1 2 3 29 29 H 1.08997 * 109.46495 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47106 * 299.99913 * 1 2 3 31 31 H 1.08997 * 109.46770 * 175.00218 * 4 2 1 32 32 H 1.08995 * 109.47019 * 55.00432 * 4 2 1 33 33 H 1.00901 * 111.00121 * 56.04666 * 5 4 2 34 34 H 1.09004 * 109.47040 * 299.99934 * 6 5 4 35 35 H 1.09000 * 109.47033 * 59.99886 * 6 5 4 36 36 H 0.96996 * 120.00269 * 359.97438 * 9 7 6 37 37 H 0.97002 * 120.00022 * 179.97438 * 13 12 10 38 38 H 1.09005 * 109.47499 * 184.99789 * 18 2 1 39 39 H 1.09001 * 109.47061 * 305.00314 * 18 2 1 40 40 H 0.96998 * 119.99871 * 359.97438 * 19 18 2 41 41 H 1.09005 * 109.46852 * 300.00176 * 22 20 19 42 42 H 1.08993 * 109.46988 * 59.99884 * 22 20 19 43 43 H 1.08001 * 122.54175 * 359.95600 * 24 23 22 44 44 H 1.08005 * 122.54282 * 180.02562 * 25 24 23 45 45 H 1.08000 * 125.20825 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.6513 0.0375 2.4457 6 6 2.1257 -0.6264 3.6673 7 6 1.7097 0.1794 4.8709 8 8 1.0796 1.2055 4.7253 9 7 2.0379 -0.2402 6.1089 10 6 1.6589 0.4926 7.2038 11 1 1.0979 1.4062 7.0744 12 6 1.9967 0.0598 8.4803 13 7 2.6790 -1.0522 8.6379 14 14 1.4810 1.0586 9.9722 15 1 0.7276 2.2588 9.5281 16 1 0.6165 0.2284 10.8489 17 1 2.6884 1.4823 10.7258 18 6 2.0401 -0.7212 -1.2491 19 7 1.6526 0.0353 -2.4423 20 6 1.9957 -0.4137 -3.6659 21 8 2.6258 -1.4437 -3.7792 22 6 1.5966 0.3643 -4.8933 23 6 2.0980 -0.3467 -6.1238 24 6 1.4224 -1.2727 -6.8057 25 6 2.0865 -1.7872 -7.9059 26 6 3.3017 -1.2793 -8.1170 27 16 3.6610 -0.0775 -6.8842 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 3.1263 -0.7994 1.2057 32 1 1.6055 -1.7197 1.2953 33 1 0.6528 0.1794 2.4753 34 1 1.6921 -1.6245 3.7302 35 1 3.2127 -0.7036 3.6401 36 1 2.5415 -1.0610 6.2252 37 1 2.9152 -1.3542 9.5290 38 1 3.1264 -0.7994 -1.2055 39 1 1.6054 -1.7198 -1.2951 40 1 1.1483 0.8590 -2.3517 41 1 0.5102 0.4425 -4.9366 42 1 2.0311 1.3629 -4.8478 43 1 0.4323 -1.5968 -6.5209 44 1 1.6535 -2.5427 -8.5449 45 1 3.9621 -1.5597 -8.9243 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714369813.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:17 Heat of formation + Delta-G solvation = -49.008878 kcal Electronic energy + Delta-G solvation = -25145.090352 eV Core-core repulsion = 21288.808253 eV Total energy + Delta-G solvation = -3856.282099 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.14672 -38.45061 -38.04294 -37.20710 -34.91182 -33.87679 -32.86959 -32.02153 -31.19032 -28.02010 -27.42328 -26.49303 -24.83029 -23.70251 -22.95061 -20.97729 -20.36397 -19.59506 -19.23082 -17.92128 -17.64703 -17.33643 -16.58874 -16.04491 -15.84758 -15.62885 -15.48762 -14.84721 -14.50202 -14.43843 -14.08344 -13.78964 -13.56748 -13.33848 -13.26971 -13.01268 -12.92271 -12.79105 -12.67840 -12.61458 -12.08847 -11.91311 -11.59860 -11.55169 -11.21624 -11.09925 -11.07591 -10.98954 -10.92075 -10.34922 -10.24023 -10.21348 -9.52682 -9.35194 -9.00292 -8.75627 -8.47397 -8.07709 -7.96546 -6.42333 -3.83217 0.64477 1.30650 1.67546 2.33450 2.38620 2.93652 3.15891 3.26520 3.33706 3.90210 4.08413 4.17618 4.30014 4.50879 4.64441 4.70046 4.74536 4.77617 4.86529 4.93152 5.12369 5.22311 5.24529 5.24976 5.33824 5.41323 5.52502 5.58212 5.69840 5.75790 5.78437 5.83686 5.93966 5.97827 6.02371 6.10405 6.14013 6.19449 6.26582 7.16514 7.19019 7.54820 7.64520 7.91487 8.05938 8.60586 9.17305 9.53804 10.05033 10.75451 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.044891 B = 0.001343 C = 0.001333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 623.579249 B =20850.247805 C =21006.728852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.101 4.101 3 H 0.089 0.911 4 C 0.066 3.934 5 N -0.668 5.668 6 C 0.050 3.950 7 C 0.441 3.559 8 O -0.584 6.584 9 N -0.564 5.564 10 C -0.299 4.299 11 H 0.104 0.896 12 C 0.022 3.978 13 N -0.901 5.901 14 Si 0.929 3.071 15 H -0.268 1.268 16 H -0.282 1.282 17 H -0.281 1.281 18 C 0.125 3.875 19 N -0.727 5.727 20 C 0.511 3.489 21 O -0.528 6.528 22 C -0.071 4.071 23 C -0.159 4.159 24 C -0.128 4.128 25 C -0.134 4.134 26 C -0.214 4.214 27 S 0.108 5.892 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.067 0.933 31 H 0.074 0.926 32 H 0.030 0.970 33 H 0.349 0.651 34 H 0.044 0.956 35 H 0.086 0.914 36 H 0.392 0.608 37 H 0.271 0.729 38 H 0.070 0.930 39 H 0.068 0.932 40 H 0.402 0.598 41 H 0.113 0.887 42 H 0.105 0.895 43 H 0.137 0.863 44 H 0.139 0.861 45 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.664 -0.764 -31.704 31.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.121 4.121 3 H 0.107 0.893 4 C -0.064 4.064 5 N -0.302 5.302 6 C -0.083 4.083 7 C 0.226 3.774 8 O -0.468 6.468 9 N -0.200 5.200 10 C -0.429 4.429 11 H 0.121 0.879 12 C -0.179 4.179 13 N -0.543 5.543 14 Si 0.757 3.243 15 H -0.192 1.192 16 H -0.208 1.208 17 H -0.207 1.207 18 C 0.001 3.999 19 N -0.380 5.380 20 C 0.296 3.704 21 O -0.403 6.403 22 C -0.113 4.113 23 C -0.277 4.277 24 C -0.158 4.158 25 C -0.164 4.164 26 C -0.350 4.350 27 S 0.372 5.628 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.086 0.914 31 H 0.092 0.908 32 H 0.048 0.952 33 H 0.169 0.831 34 H 0.061 0.939 35 H 0.104 0.896 36 H 0.226 0.774 37 H 0.081 0.919 38 H 0.088 0.912 39 H 0.086 0.914 40 H 0.236 0.764 41 H 0.131 0.869 42 H 0.123 0.877 43 H 0.155 0.845 44 H 0.157 0.843 45 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 0.221 0.442 -31.433 31.437 hybrid contribution -1.855 -1.500 0.723 2.493 sum -1.635 -1.058 -30.710 30.772 Atomic orbital electron populations 1.21902 0.94735 1.02042 1.02288 1.21366 0.96442 1.01184 0.93069 0.89254 1.21881 1.00799 0.94411 0.89342 1.60088 1.21003 1.49059 1.00023 1.21675 1.01205 0.95378 0.90004 1.19810 0.85606 0.87930 0.84040 1.90515 1.44376 1.26232 1.85715 1.41872 1.49489 1.24230 1.04441 1.19758 1.32800 1.06744 0.83605 0.87857 1.25266 0.96909 0.96649 0.99119 1.69623 1.38902 1.21778 1.23975 0.85800 0.78290 0.79567 0.80682 1.19209 1.20782 1.20734 1.21385 1.00299 0.95205 0.82965 1.45996 1.58208 1.28061 1.05745 1.20464 0.79729 0.85914 0.84308 1.90749 1.38999 1.24059 1.86518 1.20160 1.03350 0.99093 0.88725 1.23766 0.98214 1.04434 1.01281 1.20063 1.01863 0.97649 0.96272 1.20130 0.94797 1.02393 0.99095 1.25609 1.01247 1.03717 1.04408 1.84251 1.16933 1.39703 1.21904 0.92742 0.92665 0.91396 0.90765 0.95190 0.83073 0.93851 0.89551 0.77444 0.91919 0.91201 0.91383 0.76378 0.86914 0.87677 0.84479 0.84319 0.81938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 8.84 37.16 0.33 -0.98 16 2 C -0.10 -0.93 2.63 -90.62 -0.24 -1.17 16 3 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 4 C 0.07 0.76 5.14 -3.82 -0.02 0.74 16 5 N -0.67 -10.38 6.12 -115.05 -0.70 -11.09 16 6 C 0.05 0.87 6.17 -4.97 -0.03 0.84 16 7 C 0.44 10.37 7.82 -10.99 -0.09 10.28 16 8 O -0.58 -15.76 15.78 5.55 0.09 -15.67 16 9 N -0.56 -14.28 5.29 -10.97 -0.06 -14.34 16 10 C -0.30 -8.35 9.68 -14.93 -0.14 -8.50 16 11 H 0.10 3.02 7.16 -52.49 -0.38 2.65 16 12 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 13 N -0.90 -24.52 13.05 55.50 0.72 -23.79 16 14 Si 0.93 20.99 29.55 -169.99 -5.02 15.97 16 15 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 16 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 17 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 18 C 0.13 1.13 5.06 -4.05 -0.02 1.11 16 19 N -0.73 -5.47 5.28 -60.30 -0.32 -5.79 16 20 C 0.51 4.75 7.82 -10.98 -0.09 4.66 16 21 O -0.53 -7.26 16.03 5.56 0.09 -7.17 16 22 C -0.07 -0.44 6.19 -29.03 -0.18 -0.62 16 23 C -0.16 -1.33 5.00 -36.01 -0.18 -1.51 16 24 C -0.13 -1.04 10.05 -41.21 -0.41 -1.46 16 25 C -0.13 -1.01 10.18 -41.21 -0.42 -1.43 16 26 C -0.21 -1.60 11.23 29.04 0.33 -1.28 16 27 S 0.11 0.90 23.33 -107.50 -2.51 -1.61 16 28 H 0.05 0.37 7.18 -51.93 -0.37 -0.01 16 29 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.68 6.68 -51.93 -0.35 0.33 16 31 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.35 5.55 6.69 -39.29 -0.26 5.28 16 34 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 35 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 36 H 0.39 9.50 7.90 -40.82 -0.32 9.18 16 37 H 0.27 6.95 8.31 -40.82 -0.34 6.62 16 38 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 40 H 0.40 1.99 7.65 -40.82 -0.31 1.68 16 41 H 0.11 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.11 0.46 8.14 -51.93 -0.42 0.03 16 43 H 0.14 0.91 8.06 -52.49 -0.42 0.49 16 44 H 0.14 0.77 8.06 -52.48 -0.42 0.34 16 45 H 0.16 0.85 8.06 -52.49 -0.42 0.42 16 LS Contribution 394.24 15.07 5.94 5.94 Total: -1.00 -34.46 394.24 -9.66 -44.12 By element: Atomic # 1 Polarization: 18.87 SS G_CDS: -6.62 Total: 12.25 kcal Atomic # 6 Polarization: 2.44 SS G_CDS: -1.26 Total: 1.18 kcal Atomic # 7 Polarization: -54.65 SS G_CDS: -0.36 Total: -55.01 kcal Atomic # 8 Polarization: -23.02 SS G_CDS: 0.18 Total: -22.84 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Atomic # 16 Polarization: 0.90 SS G_CDS: -2.51 Total: -1.61 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -34.46 -9.66 -44.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714369813.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.889 kcal (2) G-P(sol) polarization free energy of solvation -34.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds