Wall clock time and date at job start Sat Apr 11 2020 05:41:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.47066 * 2 1 4 4 C 1.53006 * 109.47002 * 119.99631 * 2 1 3 5 5 N 1.46898 * 109.47138 * 295.00272 * 4 2 1 6 6 C 1.46906 * 110.99888 * 180.02562 * 5 4 2 7 7 C 1.50699 * 109.47140 * 179.97438 * 6 5 4 8 8 O 1.21289 * 119.99678 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99614 * 180.02562 * 7 6 5 10 10 C 1.37097 * 119.99518 * 180.02562 * 9 7 6 11 11 H 1.07996 * 120.00466 * 359.97438 * 10 9 7 12 12 C 1.38949 * 120.00085 * 179.97438 * 10 9 7 13 13 N 1.31416 * 119.99807 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 120.00303 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.46948 * 0.02562 * 14 12 10 16 16 H 1.48500 * 109.46809 * 120.00147 * 14 12 10 17 17 H 1.48497 * 109.47378 * 239.99941 * 14 12 10 18 18 C 1.52993 * 109.47412 * 239.99914 * 2 1 3 19 19 N 1.46497 * 109.47162 * 64.99947 * 18 2 1 20 20 C 1.34781 * 120.00055 * 180.02562 * 19 18 2 21 21 O 1.21277 * 120.00228 * 359.97438 * 20 19 18 22 22 C 1.50704 * 119.99940 * 179.97438 * 20 19 18 23 23 C 1.50699 * 109.47097 * 180.02562 * 22 20 19 24 24 C 1.33380 * 125.20270 * 89.99862 * 23 22 20 25 25 C 1.38424 * 114.92151 * 179.97438 * 24 23 22 26 26 C 1.33388 * 114.92010 * 0.02562 * 25 24 23 27 27 S 1.75882 * 109.59263 * 359.75892 * 26 25 24 28 28 H 1.09000 * 109.46646 * 60.00270 * 1 2 3 29 29 H 1.08997 * 109.46495 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47106 * 299.99913 * 1 2 3 31 31 H 1.08997 * 109.46770 * 175.00218 * 4 2 1 32 32 H 1.08995 * 109.47019 * 55.00432 * 4 2 1 33 33 H 1.00901 * 111.00121 * 56.04666 * 5 4 2 34 34 H 1.09004 * 109.47040 * 299.99934 * 6 5 4 35 35 H 1.09000 * 109.47033 * 59.99886 * 6 5 4 36 36 H 0.96996 * 120.00269 * 359.97438 * 9 7 6 37 37 H 0.97002 * 120.00022 * 179.97438 * 13 12 10 38 38 H 1.09005 * 109.47499 * 184.99789 * 18 2 1 39 39 H 1.09001 * 109.47061 * 305.00314 * 18 2 1 40 40 H 0.96998 * 119.99871 * 359.97438 * 19 18 2 41 41 H 1.09005 * 109.46852 * 300.00176 * 22 20 19 42 42 H 1.08993 * 109.46988 * 59.99884 * 22 20 19 43 43 H 1.08001 * 122.54175 * 359.95600 * 24 23 22 44 44 H 1.08005 * 122.54282 * 180.02562 * 25 24 23 45 45 H 1.08000 * 125.20825 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.6513 0.0375 2.4457 6 6 2.1257 -0.6264 3.6673 7 6 1.7097 0.1794 4.8709 8 8 1.0796 1.2055 4.7253 9 7 2.0379 -0.2402 6.1089 10 6 1.6589 0.4926 7.2038 11 1 1.0979 1.4062 7.0744 12 6 1.9967 0.0598 8.4803 13 7 2.6790 -1.0522 8.6379 14 14 1.4810 1.0586 9.9722 15 1 0.7276 2.2588 9.5281 16 1 0.6165 0.2284 10.8489 17 1 2.6884 1.4823 10.7258 18 6 2.0401 -0.7212 -1.2491 19 7 1.6526 0.0353 -2.4423 20 6 1.9957 -0.4137 -3.6659 21 8 2.6258 -1.4437 -3.7792 22 6 1.5966 0.3643 -4.8933 23 6 2.0980 -0.3467 -6.1238 24 6 1.4224 -1.2727 -6.8057 25 6 2.0865 -1.7872 -7.9059 26 6 3.3017 -1.2793 -8.1170 27 16 3.6610 -0.0775 -6.8842 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 3.1263 -0.7994 1.2057 32 1 1.6055 -1.7197 1.2953 33 1 0.6528 0.1794 2.4753 34 1 1.6921 -1.6245 3.7302 35 1 3.2127 -0.7036 3.6401 36 1 2.5415 -1.0610 6.2252 37 1 2.9152 -1.3542 9.5290 38 1 3.1264 -0.7994 -1.2055 39 1 1.6054 -1.7198 -1.2951 40 1 1.1483 0.8590 -2.3517 41 1 0.5102 0.4425 -4.9366 42 1 2.0311 1.3629 -4.8478 43 1 0.4323 -1.5968 -6.5209 44 1 1.6535 -2.5427 -8.5449 45 1 3.9621 -1.5597 -8.9243 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714369813.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:16 Heat of formation + Delta-G solvation = -74.271309 kcal Electronic energy + Delta-G solvation = -25146.185814 eV Core-core repulsion = 21288.808253 eV Total energy + Delta-G solvation = -3857.377560 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.87520 -40.17388 -38.72178 -38.17216 -36.17127 -35.63470 -33.67111 -33.25079 -32.73243 -28.93363 -28.47421 -27.34841 -26.38806 -24.66355 -23.85886 -21.68924 -21.30691 -20.92358 -20.14025 -19.90518 -18.29286 -18.09358 -17.79811 -17.19456 -16.84027 -16.55142 -16.43382 -16.25382 -15.94860 -15.56935 -15.34558 -15.09364 -14.59601 -14.40510 -14.08666 -13.88220 -13.74608 -13.55892 -13.49252 -13.45082 -13.28806 -13.24748 -13.07665 -12.79915 -12.43644 -12.40616 -12.11599 -12.04936 -11.83824 -11.74155 -11.65189 -11.51262 -11.00976 -10.34705 -10.07742 -10.01626 -9.57206 -9.35972 -9.32666 -8.46811 -5.95691 0.07347 0.74848 1.11026 1.36963 1.42398 1.56638 1.64687 1.81224 2.04873 2.25831 2.32162 2.96432 3.20617 3.53927 3.64067 3.87179 3.92055 4.00232 4.08087 4.22920 4.28088 4.33115 4.47260 4.52990 4.53647 4.57764 4.59565 4.71143 4.75186 4.79435 4.80759 4.96831 5.02719 5.21276 5.27223 5.37273 5.38759 5.41267 5.48414 5.60376 5.88647 6.09972 6.42313 6.56616 6.59821 7.12462 7.26777 7.56053 8.10967 8.70791 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.044891 B = 0.001343 C = 0.001333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 623.579249 B =20850.247805 C =21006.728852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.088 4.088 3 H 0.087 0.913 4 C 0.065 3.935 5 N -0.680 5.680 6 C 0.063 3.937 7 C 0.437 3.563 8 O -0.622 6.622 9 N -0.573 5.573 10 C -0.334 4.334 11 H 0.080 0.920 12 C -0.013 4.013 13 N -0.921 5.921 14 Si 0.993 3.007 15 H -0.272 1.272 16 H -0.271 1.271 17 H -0.271 1.271 18 C 0.133 3.867 19 N -0.715 5.715 20 C 0.510 3.490 21 O -0.578 6.578 22 C -0.067 4.067 23 C -0.171 4.171 24 C -0.140 4.140 25 C -0.144 4.144 26 C -0.219 4.219 27 S 0.079 5.921 28 H 0.075 0.925 29 H 0.055 0.945 30 H 0.052 0.948 31 H 0.077 0.923 32 H 0.040 0.960 33 H 0.346 0.654 34 H 0.066 0.934 35 H 0.103 0.897 36 H 0.396 0.604 37 H 0.277 0.723 38 H 0.059 0.941 39 H 0.061 0.939 40 H 0.416 0.584 41 H 0.143 0.857 42 H 0.126 0.874 43 H 0.150 0.850 44 H 0.158 0.842 45 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.241 -0.749 -32.481 32.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.107 4.107 3 H 0.105 0.895 4 C -0.064 4.064 5 N -0.314 5.314 6 C -0.069 4.069 7 C 0.225 3.775 8 O -0.509 6.509 9 N -0.211 5.211 10 C -0.464 4.464 11 H 0.098 0.902 12 C -0.212 4.212 13 N -0.562 5.562 14 Si 0.817 3.183 15 H -0.197 1.197 16 H -0.196 1.196 17 H -0.197 1.197 18 C 0.009 3.991 19 N -0.368 5.368 20 C 0.296 3.704 21 O -0.457 6.457 22 C -0.108 4.108 23 C -0.289 4.289 24 C -0.171 4.171 25 C -0.174 4.174 26 C -0.354 4.354 27 S 0.342 5.658 28 H 0.094 0.906 29 H 0.074 0.926 30 H 0.071 0.929 31 H 0.096 0.904 32 H 0.058 0.942 33 H 0.165 0.835 34 H 0.083 0.917 35 H 0.121 0.879 36 H 0.230 0.770 37 H 0.087 0.913 38 H 0.077 0.923 39 H 0.080 0.920 40 H 0.254 0.746 41 H 0.161 0.839 42 H 0.144 0.856 43 H 0.168 0.832 44 H 0.175 0.825 45 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -0.362 0.462 -32.220 32.226 hybrid contribution -1.678 -1.526 0.901 2.440 sum -2.040 -1.064 -31.320 31.404 Atomic orbital electron populations 1.21881 0.94008 1.02215 1.02610 1.21206 0.96874 1.00628 0.92018 0.89491 1.21973 1.01161 0.94735 0.88553 1.60089 1.20846 1.50040 1.00425 1.21540 1.02207 0.95110 0.88056 1.20875 0.83943 0.87657 0.85023 1.90482 1.45794 1.28147 1.86472 1.41945 1.50021 1.24338 1.04762 1.19722 1.34364 1.07009 0.85292 0.90236 1.26046 0.96411 0.97562 1.01223 1.69683 1.38970 1.22520 1.24995 0.84863 0.78223 0.77999 0.77205 1.19696 1.19604 1.19670 1.21190 0.99552 0.95065 0.83335 1.45883 1.57698 1.28292 1.04953 1.20991 0.78705 0.85366 0.85293 1.90730 1.41359 1.26378 1.87220 1.20263 1.05252 0.99111 0.86189 1.24067 0.97869 1.04902 1.02039 1.20369 1.02598 0.97593 0.96490 1.20441 0.94901 1.02779 0.99327 1.25901 1.01647 1.03274 1.04570 1.84293 1.17929 1.40635 1.22893 0.90560 0.92573 0.92926 0.90432 0.94200 0.83453 0.91656 0.87907 0.76990 0.91315 0.92308 0.92022 0.74612 0.83893 0.85575 0.83229 0.82486 0.80108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.29 8.84 71.98 0.64 -1.65 16 2 C -0.09 -1.48 2.63 -10.79 -0.03 -1.51 16 3 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 4 C 0.07 1.40 5.14 86.31 0.44 1.84 16 5 N -0.68 -20.44 6.12 -517.92 -3.17 -23.61 16 6 C 0.06 2.14 6.17 85.56 0.53 2.67 16 7 C 0.44 20.72 7.82 87.66 0.69 21.41 16 8 O -0.62 -34.22 15.78 -3.06 -0.05 -34.27 16 9 N -0.57 -29.43 5.29 -306.99 -1.62 -31.05 16 10 C -0.33 -19.00 9.68 84.04 0.81 -18.18 16 11 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16 12 C -0.01 -0.68 5.50 84.93 0.47 -0.21 16 13 N -0.92 -49.68 13.05 21.66 0.28 -49.40 16 14 Si 0.99 42.80 29.55 68.60 2.03 44.83 16 15 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 16 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 17 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 18 C 0.13 2.21 5.06 86.38 0.44 2.64 16 19 N -0.72 -9.37 5.28 -463.06 -2.45 -11.82 16 20 C 0.51 8.75 7.82 87.66 0.69 9.44 16 21 O -0.58 -15.68 16.03 -3.02 -0.05 -15.73 16 22 C -0.07 -0.69 6.19 29.10 0.18 -0.51 16 23 C -0.17 -2.66 5.00 24.59 0.12 -2.54 16 24 C -0.14 -2.11 10.05 21.21 0.21 -1.90 16 25 C -0.14 -2.03 10.18 21.22 0.22 -1.81 16 26 C -0.22 -3.10 11.23 66.72 0.75 -2.35 16 27 S 0.08 1.28 23.33 -56.49 -1.32 -0.04 16 28 H 0.08 0.82 7.18 -2.39 -0.02 0.80 16 29 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.05 0.99 6.68 -2.39 -0.02 0.98 16 31 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.35 10.78 6.69 -89.69 -0.60 10.18 16 34 H 0.07 1.95 8.14 -2.38 -0.02 1.93 16 35 H 0.10 3.17 8.14 -2.39 -0.02 3.15 16 36 H 0.40 19.32 7.90 -92.71 -0.73 18.59 16 37 H 0.28 13.97 8.31 -92.71 -0.77 13.20 16 38 H 0.06 1.13 8.14 -2.38 -0.02 1.11 16 39 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 40 H 0.42 2.98 7.65 -92.71 -0.71 2.27 16 41 H 0.14 0.60 8.14 -2.38 -0.02 0.58 16 42 H 0.13 0.77 8.14 -2.39 -0.02 0.75 16 43 H 0.15 1.75 8.06 -2.91 -0.02 1.73 16 44 H 0.16 1.50 8.06 -2.91 -0.02 1.47 16 45 H 0.18 1.69 8.06 -2.91 -0.02 1.67 16 Total: -1.00 -75.55 394.24 -1.20 -76.75 By element: Atomic # 1 Polarization: 38.01 SS G_CDS: -1.01 Total: 37.00 kcal Atomic # 6 Polarization: 1.18 SS G_CDS: 6.15 Total: 7.33 kcal Atomic # 7 Polarization: -108.91 SS G_CDS: -6.96 Total: -115.87 kcal Atomic # 8 Polarization: -49.91 SS G_CDS: -0.10 Total: -50.00 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.83 kcal Atomic # 16 Polarization: 1.28 SS G_CDS: -1.32 Total: -0.04 kcal Total: -75.55 -1.20 -76.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714369813.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.484 kcal (2) G-P(sol) polarization free energy of solvation -75.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds