Wall clock time and date at job start Sat Apr 11 2020 05:41:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00159 * 2 1 3 5 5 N 1.46499 * 109.46679 * 294.99474 * 4 2 1 6 6 C 1.36942 * 119.99744 * 179.97438 * 5 4 2 7 7 H 1.08004 * 119.99875 * 0.02562 * 6 5 4 8 8 C 1.38814 * 120.00001 * 180.02562 * 6 5 4 9 9 N 1.31615 * 119.99991 * 180.02562 * 8 6 5 10 10 Si 1.86804 * 119.99944 * 0.02562 * 8 6 5 11 11 H 1.48494 * 109.47203 * 89.99792 * 10 8 6 12 12 H 1.48496 * 109.46952 * 209.99918 * 10 8 6 13 13 H 1.48502 * 109.47006 * 329.99532 * 10 8 6 14 14 C 1.52999 * 109.47317 * 239.99669 * 2 1 3 15 15 N 1.46504 * 109.46822 * 64.99847 * 14 2 1 16 16 C 1.34773 * 119.99935 * 179.97438 * 15 14 2 17 17 O 1.21635 * 120.00604 * 0.02562 * 16 15 14 18 18 C 1.47266 * 120.00322 * 180.02562 * 16 15 14 19 19 C 1.35202 * 123.14840 * 180.02562 * 18 16 15 20 20 S 1.70941 * 108.83136 * 179.97438 * 19 18 16 21 21 C 1.70772 * 91.12890 * 359.97438 * 20 19 18 22 22 C 1.50693 * 124.72008 * 180.02562 * 21 20 19 23 23 H 1.08997 * 109.87099 * 164.27541 * 22 21 20 24 24 C 1.54106 * 109.87864 * 285.28231 * 22 21 20 25 25 C 1.54810 * 104.18804 * 121.45764 * 24 22 21 26 26 C 1.54997 * 102.09496 * 20.87552 * 25 24 22 27 27 O 1.43739 * 109.87920 * 43.26847 * 22 21 20 28 28 N 1.28651 * 110.55656 * 359.76919 * 21 20 19 29 29 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 30 30 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 31 31 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47326 * 54.99931 * 4 2 1 33 33 H 1.09000 * 109.46904 * 175.00284 * 4 2 1 34 34 H 0.96996 * 120.00184 * 0.02562 * 5 4 2 35 35 H 0.97001 * 120.00133 * 180.02562 * 9 8 6 36 36 H 1.08994 * 109.47465 * 185.00197 * 14 2 1 37 37 H 1.08998 * 109.47565 * 305.00629 * 14 2 1 38 38 H 0.96995 * 120.00028 * 0.02562 * 15 14 2 39 39 H 1.08006 * 125.58275 * 359.97438 * 19 18 16 40 40 H 1.08999 * 110.48896 * 240.12869 * 24 22 21 41 41 H 1.09003 * 110.48669 * 2.77681 * 24 22 21 42 42 H 1.08997 * 110.91231 * 139.07772 * 25 24 22 43 43 H 1.08999 * 110.90277 * 262.64663 * 25 24 22 44 44 H 1.09006 * 110.61524 * 81.47581 * 26 25 24 45 45 H 1.08993 * 110.62126 * 204.47800 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 1.6525 0.0354 2.4423 6 6 2.0011 -0.4208 3.6856 7 1 2.5621 -1.3382 3.7865 8 6 1.6335 0.2959 4.8162 9 7 1.9690 -0.1422 6.0110 10 14 0.6626 1.8823 4.6416 11 1 -0.7907 1.5783 4.6656 12 1 0.9965 2.7931 5.7659 13 1 1.0105 2.5364 3.3546 14 6 2.0400 -0.7213 -1.2492 15 7 1.6524 0.0353 -2.4423 16 6 1.9964 -0.4132 -3.6658 17 8 2.6283 -1.4463 -3.7796 18 6 1.6073 0.3476 -4.8653 19 6 1.9179 -0.0434 -6.1217 20 16 1.2907 1.1005 -7.2264 21 6 0.6497 2.0339 -5.9480 22 6 -0.1183 3.3183 -6.1244 23 1 -0.6466 3.5637 -5.2031 24 6 0.8482 4.4602 -6.4942 25 6 0.3237 4.9750 -7.8568 26 6 -1.1426 4.4726 -7.8512 27 8 -1.0569 3.1822 -7.2046 28 7 0.9091 1.4850 -4.8138 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.6054 -1.7199 1.2952 33 1 3.1263 -0.7995 1.2056 34 1 1.1484 0.8591 2.3517 35 1 1.7118 0.3584 6.8011 36 1 3.1263 -0.7996 -1.2055 37 1 1.6054 -1.7198 -1.2952 38 1 1.1488 0.8593 -2.3517 39 1 2.4716 -0.9327 -6.3844 40 1 0.8075 5.2519 -5.7461 41 1 1.8653 4.0815 -6.5953 42 1 0.3617 6.0634 -7.9022 43 1 0.8836 4.5333 -8.6811 44 1 -1.7771 5.1466 -7.2756 45 1 -1.5164 4.3679 -8.8697 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714390700.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:19 Heat of formation + Delta-G solvation = -29.342204 kcal Electronic energy + Delta-G solvation = -26163.650427 eV Core-core repulsion = 22308.221139 eV Total energy + Delta-G solvation = -3855.429288 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.89756 -39.97898 -38.79720 -36.93290 -34.49666 -32.90593 -32.50239 -32.01282 -30.51876 -29.20908 -27.17559 -26.15594 -25.06620 -23.60990 -22.53488 -21.88297 -21.26267 -20.41581 -19.92941 -19.00956 -17.54533 -17.13601 -16.86001 -16.67528 -15.86949 -15.81116 -15.66625 -14.99224 -14.75604 -14.39016 -14.28836 -14.07443 -13.93360 -13.64941 -13.53228 -13.14245 -12.63475 -12.45729 -12.42184 -12.34920 -12.20385 -12.16677 -11.90096 -11.44090 -11.42102 -11.03182 -10.76290 -10.65732 -10.60064 -10.57926 -10.24228 -10.19170 -10.05954 -10.05058 -9.56796 -9.36573 -9.02630 -8.88441 -7.21520 -5.75175 -3.10613 0.10776 0.80354 1.24442 1.59050 2.89699 3.14144 3.21710 3.37643 3.40019 3.45535 3.66968 3.88226 4.22909 4.25270 4.41692 4.60075 4.62278 4.74445 4.81700 4.89422 4.95164 5.07037 5.12475 5.13809 5.18591 5.28601 5.30810 5.40203 5.44307 5.55267 5.69904 5.76658 5.89358 5.91096 6.13770 6.13935 6.26340 6.39103 6.48515 6.67951 6.77695 6.95806 7.46170 8.01368 8.06540 8.43789 9.22808 9.94998 10.14919 11.43288 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.015269 B = 0.002163 C = 0.001942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1833.291196 B =12941.431484 C =14411.016709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.115 4.115 3 H 0.076 0.924 4 C 0.165 3.835 5 N -0.754 5.754 6 C -0.243 4.243 7 H 0.091 0.909 8 C 0.003 3.997 9 N -0.934 5.934 10 Si 0.884 3.116 11 H -0.284 1.284 12 H -0.291 1.291 13 H -0.277 1.277 14 C 0.126 3.874 15 N -0.706 5.706 16 C 0.591 3.409 17 O -0.536 6.536 18 C 0.012 3.988 19 C -0.229 4.229 20 S 0.245 5.755 21 C 0.018 3.982 22 C 0.155 3.845 23 H 0.104 0.896 24 C -0.148 4.148 25 C -0.156 4.156 26 C 0.045 3.955 27 O -0.367 6.367 28 N -0.434 5.434 29 H 0.046 0.954 30 H 0.063 0.937 31 H 0.058 0.942 32 H 0.032 0.968 33 H 0.030 0.970 34 H 0.361 0.639 35 H 0.259 0.741 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.409 0.591 39 H 0.192 0.808 40 H 0.091 0.909 41 H 0.082 0.918 42 H 0.087 0.913 43 H 0.081 0.919 44 H 0.068 0.932 45 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.527 10.801 -35.732 37.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.134 4.134 3 H 0.095 0.905 4 C 0.037 3.963 5 N -0.400 5.400 6 C -0.373 4.373 7 H 0.108 0.892 8 C -0.193 4.193 9 N -0.582 5.582 10 Si 0.715 3.285 11 H -0.211 1.211 12 H -0.217 1.217 13 H -0.204 1.204 14 C 0.002 3.998 15 N -0.357 5.357 16 C 0.374 3.626 17 O -0.413 6.413 18 C -0.123 4.123 19 C -0.372 4.372 20 S 0.502 5.498 21 C -0.261 4.261 22 C 0.093 3.907 23 H 0.122 0.878 24 C -0.187 4.187 25 C -0.194 4.194 26 C -0.031 4.031 27 O -0.285 6.285 28 N -0.151 5.151 29 H 0.065 0.935 30 H 0.082 0.918 31 H 0.077 0.923 32 H 0.050 0.950 33 H 0.048 0.952 34 H 0.194 0.806 35 H 0.069 0.931 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.245 0.755 39 H 0.209 0.791 40 H 0.109 0.891 41 H 0.101 0.899 42 H 0.106 0.894 43 H 0.099 0.901 44 H 0.087 0.913 45 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -4.283 10.059 -36.226 37.840 hybrid contribution -0.557 1.176 1.054 1.675 sum -4.839 11.236 -35.172 37.239 Atomic orbital electron populations 1.21817 0.94701 1.02295 1.01320 1.21604 0.96731 1.00602 0.94433 0.90521 1.20554 0.97205 0.94241 0.84265 1.42688 1.67888 1.27102 1.02341 1.19071 1.29456 1.07012 0.81717 0.89163 1.24678 1.00860 0.98632 0.95113 1.69701 1.51327 1.40308 0.96907 0.86545 0.80456 0.84638 0.76892 1.21062 1.21737 1.20367 1.21475 1.00460 0.95347 0.82506 1.45882 1.56548 1.27955 1.05289 1.17013 0.79488 0.84010 0.82061 1.90829 1.40451 1.23646 1.86369 1.20418 1.03100 0.94179 0.94621 1.26759 1.06822 1.07058 0.96531 1.82887 1.43942 1.12469 1.10508 1.26877 1.04619 1.02504 0.92111 1.21042 0.88959 0.87672 0.92988 0.87793 1.23056 0.99887 0.97560 0.98161 1.23183 0.96451 1.02313 0.97464 1.23697 0.96394 0.84448 0.98604 1.88991 1.61706 1.31959 1.45862 1.66807 1.12937 1.07890 1.27455 0.93485 0.91843 0.92337 0.95049 0.95231 0.80619 0.93080 0.90869 0.90862 0.75493 0.79100 0.89079 0.89928 0.89414 0.90078 0.91332 0.88242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.08 8.94 37.16 0.33 -1.75 16 2 C -0.11 -1.73 2.46 -90.62 -0.22 -1.95 16 3 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 4 C 0.17 3.19 5.65 -4.04 -0.02 3.17 16 5 N -0.75 -18.02 5.13 -59.90 -0.31 -18.33 16 6 C -0.24 -6.97 10.47 -15.06 -0.16 -7.12 16 7 H 0.09 2.77 8.06 -52.48 -0.42 2.35 16 8 C 0.00 0.08 5.50 -17.43 -0.10 -0.01 16 9 N -0.93 -29.68 13.97 55.49 0.78 -28.91 16 10 Si 0.88 22.24 27.74 -169.99 -4.71 17.53 16 11 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 12 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 13 H -0.28 -6.54 6.52 56.52 0.37 -6.17 16 14 C 0.13 1.75 5.06 -4.04 -0.02 1.73 16 15 N -0.71 -9.25 5.28 -61.43 -0.32 -9.58 16 16 C 0.59 8.40 7.80 -12.59 -0.10 8.30 16 17 O -0.54 -9.03 16.71 5.25 0.09 -8.94 16 18 C 0.01 0.15 6.70 -84.53 -0.57 -0.42 16 19 C -0.23 -2.25 10.62 29.65 0.31 -1.93 16 20 S 0.24 1.81 22.72 -107.50 -2.44 -0.63 16 21 C 0.02 0.17 6.10 -13.61 -0.08 0.08 16 22 C 0.15 1.10 3.94 -27.31 -0.11 0.99 16 23 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 24 C -0.15 -0.69 6.63 -25.20 -0.17 -0.86 16 25 C -0.16 -0.49 7.16 -24.72 -0.18 -0.67 16 26 C 0.04 0.18 7.72 38.21 0.29 0.47 16 27 O -0.37 -2.71 11.01 -35.23 -0.39 -3.10 16 28 N -0.43 -4.86 10.12 -8.51 -0.09 -4.95 16 29 H 0.05 0.58 7.18 -51.93 -0.37 0.21 16 30 H 0.06 1.01 7.18 -51.93 -0.37 0.64 16 31 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.36 8.36 4.71 -40.82 -0.19 8.16 16 35 H 0.26 7.82 8.31 -40.82 -0.34 7.48 16 36 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 38 H 0.41 4.89 7.17 -40.82 -0.29 4.59 16 39 H 0.19 1.65 8.03 -52.48 -0.42 1.23 16 40 H 0.09 0.35 8.14 -51.93 -0.42 -0.08 16 41 H 0.08 0.41 7.69 -51.93 -0.40 0.01 16 42 H 0.09 0.15 8.14 -51.93 -0.42 -0.27 16 43 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 44 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 45 H 0.10 0.27 8.14 -51.93 -0.42 -0.16 16 LS Contribution 384.21 15.07 5.79 5.79 Total: -1.00 -34.95 384.21 -9.10 -44.06 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: -6.72 Total: 7.03 kcal Atomic # 6 Polarization: 0.81 SS G_CDS: -0.78 Total: 0.03 kcal Atomic # 7 Polarization: -61.82 SS G_CDS: 0.06 Total: -61.76 kcal Atomic # 8 Polarization: -11.74 SS G_CDS: -0.30 Total: -12.04 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -4.71 Total: 17.53 kcal Atomic # 16 Polarization: 1.81 SS G_CDS: -2.44 Total: -0.63 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -34.95 -9.10 -44.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714390700.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.715 kcal (2) G-P(sol) polarization free energy of solvation -34.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds