Wall clock time and date at job start Sat Apr 11 2020 05:41:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.52992 * 109.47482 * 120.00154 * 2 1 3 5 5 N 1.46497 * 109.47408 * 295.00294 * 4 2 1 6 6 C 1.36934 * 120.00520 * 179.97438 * 5 4 2 7 7 H 1.08002 * 120.00170 * 0.02562 * 6 5 4 8 8 C 1.38810 * 120.00307 * 179.97438 * 6 5 4 9 9 N 1.31621 * 120.00086 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 120.00046 * 179.97438 * 8 6 5 11 11 H 1.48503 * 109.47014 * 90.00003 * 10 8 6 12 12 H 1.48499 * 109.47254 * 209.99746 * 10 8 6 13 13 H 1.48491 * 109.47332 * 330.00035 * 10 8 6 14 14 C 1.53006 * 109.47127 * 240.00501 * 2 1 3 15 15 N 1.46490 * 109.47115 * 64.99762 * 14 2 1 16 16 C 1.34778 * 119.99990 * 179.97438 * 15 14 2 17 17 O 1.21628 * 120.00188 * 0.02562 * 16 15 14 18 18 C 1.47273 * 120.00058 * 179.97438 * 16 15 14 19 19 C 1.35211 * 123.13753 * 179.71264 * 18 16 15 20 20 S 1.70945 * 108.82291 * 179.87268 * 19 18 16 21 21 C 1.70772 * 91.13067 * 0.32636 * 20 19 18 22 22 C 1.50695 * 124.72290 * 179.84075 * 21 20 19 23 23 H 1.09000 * 110.33219 * 197.20909 * 22 21 20 24 24 C 1.54480 * 110.37115 * 74.95915 * 22 21 20 25 25 C 1.54506 * 104.06769 * 217.19494 * 24 22 21 26 26 C 1.54487 * 104.06048 * 359.97438 * 25 24 22 27 27 O 1.44431 * 104.80225 * 23.98318 * 26 25 24 28 28 N 1.28650 * 110.55882 * 359.80900 * 21 20 19 29 29 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 30 30 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 32 32 H 1.09002 * 109.46906 * 55.00224 * 4 2 1 33 33 H 1.09006 * 109.47717 * 174.99599 * 4 2 1 34 34 H 0.97008 * 119.99817 * 359.97438 * 5 4 2 35 35 H 0.96994 * 120.00308 * 180.02562 * 9 8 6 36 36 H 1.09007 * 109.47135 * 184.99942 * 14 2 1 37 37 H 1.08996 * 109.46945 * 304.99450 * 14 2 1 38 38 H 0.96999 * 120.00755 * 0.02562 * 15 14 2 39 39 H 1.08001 * 125.59051 * 0.02562 * 19 18 16 40 40 H 1.09007 * 110.51144 * 335.83642 * 24 22 21 41 41 H 1.08999 * 110.51192 * 98.40746 * 24 22 21 42 42 H 1.08993 * 110.51821 * 118.64164 * 25 24 22 43 43 H 1.09000 * 110.51183 * 241.22439 * 25 24 22 44 44 H 1.08999 * 110.37131 * 142.81118 * 26 25 24 45 45 H 1.09002 * 110.37359 * 265.04049 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2491 5 7 1.6525 0.0352 2.4423 6 6 2.0011 -0.4209 3.6855 7 1 2.5622 -1.3382 3.7864 8 6 1.6344 0.2962 4.8160 9 7 0.9510 1.4143 4.6931 10 14 2.1094 -0.3265 6.5119 11 1 3.4324 0.2312 6.8913 12 1 1.0888 0.1038 7.5010 13 1 2.1847 -1.8094 6.4916 14 6 2.0400 -0.7212 -1.2494 15 7 1.6524 0.0355 -2.4423 16 6 1.9964 -0.4129 -3.6659 17 8 2.6283 -1.4459 -3.7797 18 6 1.6063 0.3475 -4.8653 19 6 1.9222 -0.0403 -6.1215 20 16 1.2893 1.1002 -7.2265 21 6 0.6482 2.0335 -5.9480 22 6 -0.1206 3.3175 -6.1243 23 1 -0.1563 3.8695 -5.1851 24 6 -1.5503 3.0232 -6.6299 25 6 -1.8462 4.1780 -7.6129 26 6 -0.5604 5.0339 -7.5844 27 8 0.4788 4.1246 -7.1610 28 7 0.9123 1.4874 -4.8135 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 -0.8900 32 1 1.6055 -1.7198 1.2950 33 1 3.1264 -0.7995 1.2055 34 1 1.1488 0.8594 2.3517 35 1 0.6950 1.9156 5.4831 36 1 3.1264 -0.7994 -1.2057 37 1 1.6055 -1.7197 -1.2953 38 1 1.1488 0.8595 -2.3518 39 1 2.4805 -0.9268 -6.3840 40 1 -1.5828 2.0640 -7.1468 41 1 -2.2582 3.0335 -5.8011 42 1 -2.0249 3.7899 -8.6155 43 1 -2.7021 4.7602 -7.2715 44 1 -0.3418 5.4235 -8.5786 45 1 -0.6647 5.8519 -6.8715 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714390704.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:22 Heat of formation + Delta-G solvation = -33.734805 kcal Electronic energy + Delta-G solvation = -26046.482289 eV Core-core repulsion = 22190.862523 eV Total energy + Delta-G solvation = -3855.619766 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.83692 -39.91555 -38.74481 -36.77797 -34.35620 -32.81451 -32.46877 -31.98972 -30.03391 -29.15204 -27.07417 -25.90068 -25.00372 -23.69558 -22.46696 -22.03831 -21.25979 -20.31355 -19.80239 -18.88828 -17.18857 -17.00666 -16.72133 -16.57449 -15.90007 -15.67951 -15.66799 -14.95943 -14.65700 -14.43288 -14.30446 -14.00680 -13.81626 -13.54038 -13.35362 -13.01170 -12.60638 -12.40137 -12.30697 -12.27922 -12.16190 -12.00432 -11.91221 -11.29494 -11.03484 -10.88872 -10.69394 -10.55957 -10.54306 -10.41079 -10.23650 -10.17670 -10.00528 -9.96040 -9.65339 -9.32148 -8.95713 -8.85264 -6.89682 -5.74677 -3.02943 0.14676 0.84296 1.28674 1.63456 2.91901 3.20478 3.26901 3.45590 3.50716 3.52383 3.77319 3.98646 4.26771 4.34228 4.51525 4.61429 4.68422 4.73527 4.86818 4.95839 5.09131 5.11967 5.16396 5.25597 5.27600 5.38721 5.43876 5.43954 5.48803 5.60086 5.85381 6.00043 6.01467 6.13948 6.14633 6.29372 6.42573 6.48972 6.68906 6.80924 6.90194 7.00526 7.53358 7.72699 8.12848 8.44505 9.55660 10.13357 10.48233 11.48388 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.016740 B = 0.001973 C = 0.001806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1672.272999 B =14185.508290 C =15496.680700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.110 4.110 3 H 0.077 0.923 4 C 0.161 3.839 5 N -0.731 5.731 6 C -0.238 4.238 7 H 0.071 0.929 8 C -0.016 4.016 9 N -0.935 5.935 10 Si 0.908 3.092 11 H -0.290 1.290 12 H -0.292 1.292 13 H -0.282 1.282 14 C 0.125 3.875 15 N -0.704 5.704 16 C 0.591 3.409 17 O -0.537 6.537 18 C 0.013 3.987 19 C -0.230 4.230 20 S 0.248 5.752 21 C 0.021 3.979 22 C 0.153 3.847 23 H 0.105 0.895 24 C -0.146 4.146 25 C -0.155 4.155 26 C 0.045 3.955 27 O -0.366 6.366 28 N -0.432 5.432 29 H 0.070 0.930 30 H 0.052 0.948 31 H 0.043 0.957 32 H 0.023 0.977 33 H 0.021 0.979 34 H 0.384 0.616 35 H 0.255 0.745 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.410 0.590 39 H 0.192 0.808 40 H 0.079 0.921 41 H 0.090 0.910 42 H 0.079 0.921 43 H 0.083 0.917 44 H 0.098 0.902 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.851 5.571 -32.162 33.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.129 4.129 3 H 0.096 0.904 4 C 0.033 3.967 5 N -0.375 5.375 6 C -0.369 4.369 7 H 0.089 0.911 8 C -0.211 4.211 9 N -0.583 5.583 10 Si 0.739 3.261 11 H -0.218 1.218 12 H -0.218 1.218 13 H -0.208 1.208 14 C 0.002 3.998 15 N -0.355 5.355 16 C 0.374 3.626 17 O -0.415 6.415 18 C -0.123 4.123 19 C -0.373 4.373 20 S 0.506 5.494 21 C -0.258 4.258 22 C 0.092 3.908 23 H 0.123 0.877 24 C -0.185 4.185 25 C -0.193 4.193 26 C -0.032 4.032 27 O -0.285 6.285 28 N -0.149 5.149 29 H 0.089 0.911 30 H 0.072 0.928 31 H 0.062 0.938 32 H 0.040 0.960 33 H 0.039 0.961 34 H 0.218 0.782 35 H 0.064 0.936 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.246 0.754 39 H 0.209 0.791 40 H 0.097 0.903 41 H 0.109 0.891 42 H 0.098 0.902 43 H 0.102 0.898 44 H 0.116 0.884 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -5.293 5.061 -32.730 33.539 hybrid contribution -0.054 -0.106 1.955 1.959 sum -5.348 4.955 -30.775 31.627 Atomic orbital electron populations 1.21792 0.94616 1.01908 1.01584 1.21551 0.96802 1.00568 0.94030 0.90448 1.20574 0.96614 0.94201 0.85351 1.42342 1.66933 1.27682 1.00572 1.19242 1.28567 1.05404 0.83662 0.91147 1.24740 1.01084 0.97447 0.97861 1.69657 1.43613 1.16615 1.28465 0.86173 0.77560 0.78007 0.84365 1.21751 1.21804 1.20765 1.21499 1.00313 0.95292 0.82722 1.45894 1.56408 1.27942 1.05263 1.17016 0.79521 0.83995 0.82086 1.90820 1.40564 1.23712 1.86393 1.20426 1.02858 0.94313 0.94661 1.26776 1.07000 1.06858 0.96621 1.82917 1.44423 1.11773 1.10326 1.26583 1.05018 1.02066 0.92139 1.21245 0.89564 0.86203 0.93820 0.87698 1.23035 0.95384 0.99969 1.00134 1.22965 0.98888 0.96872 1.00545 1.23483 0.86160 0.92409 1.01124 1.89169 1.35373 1.49843 1.54085 1.66798 1.12718 1.08131 1.27261 0.91122 0.92845 0.93799 0.95955 0.96097 0.78187 0.93550 0.91076 0.91071 0.75419 0.79100 0.90259 0.89103 0.90188 0.89826 0.88376 0.91461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.21 8.94 37.16 0.33 -1.88 16 2 C -0.11 -1.79 2.46 -90.62 -0.22 -2.01 16 3 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 4 C 0.16 3.27 5.65 -4.05 -0.02 3.25 16 5 N -0.73 -18.63 5.33 -59.91 -0.32 -18.95 16 6 C -0.24 -6.74 9.99 -15.06 -0.15 -6.89 16 7 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 8 C -0.02 -0.45 5.50 -17.43 -0.10 -0.55 16 9 N -0.93 -28.45 13.06 55.49 0.72 -27.73 16 10 Si 0.91 22.70 29.55 -169.99 -5.02 17.67 16 11 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 12 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 13 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 14 C 0.13 1.85 5.06 -4.04 -0.02 1.83 16 15 N -0.70 -9.73 5.28 -61.43 -0.32 -10.05 16 16 C 0.59 8.70 7.80 -12.59 -0.10 8.61 16 17 O -0.54 -9.30 16.71 5.25 0.09 -9.21 16 18 C 0.01 0.16 6.70 -84.52 -0.57 -0.40 16 19 C -0.23 -2.34 10.62 29.65 0.31 -2.03 16 20 S 0.25 1.95 22.69 -107.50 -2.44 -0.49 16 21 C 0.02 0.20 6.26 -13.61 -0.09 0.12 16 22 C 0.15 1.16 3.81 -27.11 -0.10 1.05 16 23 H 0.11 0.79 8.14 -51.93 -0.42 0.37 16 24 C -0.15 -0.77 6.62 -25.16 -0.17 -0.94 16 25 C -0.15 -0.56 7.09 -25.16 -0.18 -0.74 16 26 C 0.04 0.20 7.63 37.94 0.29 0.49 16 27 O -0.37 -2.87 11.13 -35.23 -0.39 -3.26 16 28 N -0.43 -5.05 10.12 -8.51 -0.09 -5.14 16 29 H 0.07 1.27 7.18 -51.93 -0.37 0.89 16 30 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.04 0.58 7.18 -51.93 -0.37 0.21 16 32 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.38 10.19 6.85 -40.82 -0.28 9.91 16 35 H 0.25 7.49 8.31 -40.82 -0.34 7.15 16 36 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 38 H 0.41 5.22 7.17 -40.82 -0.29 4.93 16 39 H 0.19 1.71 8.03 -52.49 -0.42 1.29 16 40 H 0.08 0.42 7.87 -51.93 -0.41 0.01 16 41 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 43 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 44 H 0.10 0.31 8.14 -51.93 -0.42 -0.11 16 45 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 LS Contribution 387.47 15.07 5.84 5.84 Total: -1.00 -33.90 387.47 -9.48 -43.38 By element: Atomic # 1 Polarization: 14.81 SS G_CDS: -6.77 Total: 8.05 kcal Atomic # 6 Polarization: 0.67 SS G_CDS: -0.77 Total: -0.11 kcal Atomic # 7 Polarization: -61.86 SS G_CDS: -0.01 Total: -61.87 kcal Atomic # 8 Polarization: -12.17 SS G_CDS: -0.30 Total: -12.47 kcal Atomic # 14 Polarization: 22.70 SS G_CDS: -5.02 Total: 17.67 kcal Atomic # 16 Polarization: 1.95 SS G_CDS: -2.44 Total: -0.49 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -33.90 -9.48 -43.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714390704.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.645 kcal (2) G-P(sol) polarization free energy of solvation -33.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds